Thayer J, Enloe S, Prince C, MacDonald G, Leary J. 2024. Spatial-temporal shifts in submersed aquatic vegetation community structure resulting from a selective herbicide treatment in Lake Sampson, Florida, USA. Lake Reserv Manage. 40:248–263. Submersed aquatic vegetation (SAV) is a major ecological component of Florida’s shallow lake systems. Hydrilla (H; Hydrilla verticillata [L.F.] Royle) is a nonnative, invasive SAV dominating many of these lakes and a high management priority in conservation. Lake Sampson is a shallow 776-ha lake in north Florida dominated by hydrilla since the 1980s, with native Illinois pondweed (P; Potamogeton illinoensis Morong) and American eelgrass (V; Vallisneria americana Michx.) historically represented. In March 2021, an in-water treatment of the herbicide florpyrauxifen-benzyl was administered to the littoral zone covering 46% of the lake surface. Five months after treatment (MAT), H infestations were reduced by 99%, recruitment by 69%, and invasions to cohabitating native populations by 90%. Conversely, total combined P populations increased occupancy from 15% to 23%, while V populations exhibited only a slight decrease in occupancy, going from 19% to 18%. By 17 MAT, hydrilla infestations, recruits, and invasions had all increased, while native populations started to retract from earlier gains. Moreover, surveys revealed a significant shift in SAV communities to shallower depths that were immediate 1 month after treatment and sustained 17 months later with the posttreatment reduction of hydrilla exclusively occupying deeper water. Posttreatment changes in water quality were apparent and possibly influential to SAV community dynamics. Although this in-water herbicide treatment exhibited good selectivity and reduced hydrilla competition, unintended side effects in water quality may have impeded the long-term succession of resilient native SAV communities that could compete with the recovery of hydrilla.