Methane is the second largest greenhouse gas in the world, with a stronger greenhouse effect than carbon dioxide. The efficient elimination of methane in the atmosphere has important engineering significance in slowing down global temperature rise, energy resource utilization, collaborative control of pollutants, and promoting technological innovation. In this work, a general hydrothermal synthesis method was introduced to in-situ construct four different morphologies of MnCoOx (including rod-, spherical-, filamentous- and bulk-shape) on foam nickel (NF). The synthesis of MnCoOx/NF with different morphologies was due to changes in NF pretreatment conditions and precipitants, which affected the nucleation and growth rates of MnCoOx, ultimately resulting in different morphologies. When the four different morphologies of MnCoOx/NF were used as catalysts for lean methane catalytic oxidation, MnCoOx/NF-r exhibited the best excellent catalytic activity, and the T90 occurred at 428 °C in space velocity of 48,000 mL g−1 h−1. Such an outstanding performance was attributed to the unique properties of the MnCoOx/NF-r including the larger surface area and more oxygen vacancies for providing more active sites and a higher oxygen migration rate, which was very beneficial for improving the catalytic oxidation performance of methane.