The use of biological monitoring (biomonitoring) to assess water quality is recognised alongside the use of chemical and physicochemical parameters due to its ability and efficiency in providing information about both current and long-term changes. Indeed, biomonitoring is applied in several developed and developing countries. Nevertheless, some developing countries, such as Rwanda, are yet to adopt such a monitoring system. This paper presents results of an assessment of the knowledge and perceptions by water resource managers about the use of biomonitoring and bioindicators, and challenges to their integration into existing routine water quality monitoring systems in Rwanda. Qualitative research, using semistructured interviews, was conducted with nine water resource practitioners from six water governance institutions between August and November 2021. The results show that participants are aware that macroinvertebrates, algae and fish are bioindicators that have potential applications in Rwanda to complement the chemical and physicochemical parameters already being collected in the country’s water monitoring system. The main challenges for integration of biological indicators, as indicated by participants, include the need for equipment, funding, technical skills and taxonomic knowledge. Training in the use of bioindicators and taxonomy are needed to raise the awareness and skills of staff from the institutions involved in freshwater ecosystem management in Rwanda, and to encourage integration of biomonitoring results into national water monitoring frameworks.
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