USDA-ARS National Plant Germplasm System Research Articles

Vulnerability of pear (Pyrus) genetic resources in the U.S.

AbstractPears (Pyrus) represent an important part of consumer diets, and have the fourth highest production of non-citrus fruits, measured by fresh weight, in the U.S. They are maintained clonally and grown as composite plants, consisting of a scion (fruit bearing) cultivar grafted onto a rootstock cultivar. Up to 98% of existing production relies on only a few scion and rootstock cultivars, leaving the standing crop vulnerable to threats. Pears are faced with a wide range of biotic and abiotic threats and production vulnerabilities, some of which can be limited by integrating resistance and horticultural traits from wild and cultivated materials from around the world. The National Clonal Germplasm Repository (NCGR Corvallis), part of the USDA-ARS National Plant Germplasm System, maintains a large Pyrus collection from across the globe, consisting of 2793 Pyrus accessions from 37 species. The collection represents an important resource for preservation, research, and breeding efforts for pears. The crop vulnerability status of pears in the U.S. is currently moderate to high, with increasing threats and challenges. Breeding and preservation efforts, along with genetic, crop protection and production research are, however, actively targeting these needs.

DNA profiling with the 20K apple SNP array reveals Malus domestica hybridization and admixture in M. sieversii, M.orientalis, and M. sylvestris genebank accessions.

The USDA-ARS National Plant Germplasm System (NPGS) apple collection in Geneva, NY, USA maintains accessions of the primary Malus domestica (Suckow) Borkh. progenitor species M. sieversii (Ledeb.) M. Roem., M. orientalis Uglitzk., and M. sylvestris (L.) Mill. Many of these accessions originated from seeds that were collected from wild populations in the species’ centers of diversity. Some of these accessions have fruit phenotypes that suggest recent M. domestica hybridization, which if true would represent crop contamination of wild species populations and mislabeled species status of NPGS accessions. Pedigree connections and admixture between M. domestica and its progenitor species can be readily identified with apple SNP array data, despite such arrays not being designed for these purposes. To investigate species purity, most (463 accessions) of the NPGS accessions labeled as these three progenitor species were genotyped using the 20K apple SNP array. DNA profiles obtained were compared with a dataset of more than 5000 unique M. domestica apple cultivars. Only 212 accessions (151 M. sieversii, 26 M. orientalis, and 35 M. sylvestris) were identified as “pure” species representatives because their DNA profiles did not exhibit genotypic signatures of recent hybridization with M. domestica. Twenty-one accessions (17 M. sieversii, 1 M. orientalis, and 3 M. sylvestris) previously labeled as wild species were instead fully M. domestica. Previously unrealized hybridization and admixture between wild species and M. domestica was identified in 230 accessions (215 M. sieversii, 9 M. orientalis, and 6 M. sylvestris). Among these species-mislabeled accessions, ‘Alexander’, ‘Gold Reinette’, ‘Charlamoff’, ‘Rosmarina Bianca’, and ‘King of the Pippins’ were the most frequently detected M. domestica parents or grandparents. These results have implications for collection management, including germplasm distribution, and might affect conclusions of previous research focused on these three progenitor species in the NPGS apple collection. Specifically, accessions received from the NPGS for breeding and genomics, genetics, and evolutionary biology research might not be truly representative of their previously assigned species.

Optimization of in vitro germination and cryopreservation conditions for preserving date palm pollen in the USDA National Plant Germplasm System

Date palm (Phoenix dactylifera L.) is a staple crop across arid and semi-arid regions around the world. Both genebanks and date palm breeders benefit by having clearly defined methods for the long-term preservation of pollen. Methods were developed to cryopreserve pollen from date palm trees in the USDA-ARS National Plant Germplasm System. First, in vitro pollen germination conditions were optimized using five cultivars. Then, date palm pollen equilibrated over saturated salt solutions of Ca(NO3)2 or MgCl2 at 23 °C (46% and 33% RH, respectively) or in a room set at 23% RH and 5 °C. Pollen was kept at these conditions for one to 56 days and then placed into liquid nitrogen vapor (LNV). Viability was assessed for fresh, moisture-equilibrated (non-LNV and LNV-exposed), and pollen stored in LNV for 9 months. The highest level of in vitro pollen germination was observed for date palm cultivar Thoory BC3 (60 ± 2%) when it was rehydrated for 2 h and then incubated at 23 °C on Marquard medium with 15% sucrose. Viability remained stable for pollen that was stored in LNV for 9 months. In addition, pollen also remained viable if it was cooled to and warmed from LNV for up to 60 cycles. These data suggest that date palm pollen can be successfully placed in genebank cryostorage. Using optimized in vitro germination conditions, date palm pollen can survive at least 9 months in LNV and can be cooled to and warmed from LNV at least 60 times.

Enhancing the searchability, breeding utility, and efficient management of germplasm accessions in the USDA−ARS rice collection

AbstractGenebanks conserve worldwide crop genetic diversity in systematically assembled and maintained ex situ collections for use by plant breeders and geneticists to improve the productivity, value, and sustainability of agriculture. Challenges faced in genebank management include providing sufficient and accurate trait information to facilitate searching the collection; controlling redundant accessions, seed mixtures, and mislabeled accessions; and identifying gaps in diversity. To help address these issues, a system that employs genotyping using 24 trait‐specific markers (TSMs), fingerprint markers (FPMs), or markers that are unique to subspecies was implemented for the USDA–ARS National Plant Germplasm System (NPGS), National Small Grains Collection (NSGC) for rice (Oryza sativa L.). Trait‐specific markers were used to validate phenotypic data for fragrance, pericarp color, apparent amylose content, starch pasting properties, gelatinization temperature, resistance to rice blast disease, plant pubescence, and plant height. Discrepancies between genotypic and phenotypic data are useful for quality control during curation or may present opportunities for identifying novel alleles, particularly for TSMs. Over 2,000 accessions were classified by species, O. sativa or O. glaberrima Steud.; subspecies, Indica or Japonica; and subpopulation, aromatic, indica, aus, temperate japonica, or tropical japonica using the subspecies marker and FPMs. This small panel of TSMs and FPMs was also adequate for differentiating important U.S. cultivars, which are primarily of tropical japonica background. As a result of this study, TSM and FPM descriptors will be added to the rice NSGC database, redundancies reduced, and mislabeled accessions corrected, thus increasing the value of the rice NSGC for breeding programs and providing new opportunities for gene discovery.

Implementation of Citrus shoot tip cryopreservation in the USDA-ARS National Plant Germplasm System

The USDA-ARS National Plant Germplasm System (NPGS) maintains a citrus genetic resource collection of 1522 accessions of Citrus cultivars and crop wild relatives. Of these, 540 are maintained as pathogen-free duplicate clones in a screenhouse at the National Clonal Germplasm Repository for Citrus and Dates (NCGRCD) in Riverside, California. An additional 815 accessions of citrus and citrus relatives are maintained in greenhouses or orchards in Riverside until sanitation for pathogens can be completed. This paper describes progress in backing up the 540 pathogen-tested accessions using cryopreservation techniques and methods to accelerate processing and viability testing. Vegetative budwood was harvested from trees in the screenhouse and sent to NLGRP. At least 170 shoot tips from each accession were excised from surface-sterilized budwood, and then cryopreserved using a PVS2 droplet-vitrification technique. Viability was assessed by micrografting 10 thawed shoot tips onto in vitro grown 'Carrizo' seedling rootstock. The remaining shoot tips are held in long-term liquid nitrogen storage. A total of 451 of the pathogen-tested citrus accessions were cryoprocessed: 354 accessions had regrowth levels of 40% or greater, 17 had 0% regrowth, 47 had viability levels between 10 and 30%, and 33 had endogenous contaminants. Technical staff familiar with shoot-tip cryoprocessing could be fully trained for specific applications of citrus in about 2 months and thereafter processed a single accession of at least 170 shoot tips in about 16 h. This large-scale effort has revealed that shoot tip cryopreservation can be successfully scaled-up to secure the NPGS Citrus collection.

Challenges in the development of a widely applicable method for sugarcane (Saccharum spp.) shoot tip cryopreservation

The USDA-ARS National Plant Germplasm System (NPGS) maintains 946 accessions of sugarcane (Saccharum spp.) in the field at the Subtropical Horticulture Research Station in Miami, Florida. These accessions are particularly vulnerable to hurricanes, diseases, and other threats. We sought to identify a method whereby clonally propagated sugarcane accessions could be successfully introduced into tissue culture, multiplied, and then cryopreserved as shoot tips for long-term preservation at the National Laboratory for Genetic Resources Preservation in Fort Collins, Colorado. For many accessions, 70% isopropyl alcohol and 20% commercial bleach treatments, followed by three rinses of sterile water were sufficient to remove microbial contaminants during the introduction process. However, in some cases, cefotaxime was particularly effective for removing bacterial contamination. We found that antioxidant treatments of glutathione, glycine betaine, and ascorbic acid did not improve regrowth after liquid nitrogen exposure using either PVS2 or PVS3 as cryoprotectants in droplet vitrification cryopreservation methods. Exposure durations of PVS2 and PVS3 were optimized, with and without exposure to liquid nitrogen (LN), and shoot tip regrowth levels ranged from 0 to 37% after LN exposure. Published methods for encapsulation-dehydration and V-plate vitrification cryopreservation procedures were tested to determine if acceptable results could be obtained. Using these methods, shoot tip regrowth levels ranged from 0 to 50% after LN exposure. We conclude that the sugarcane cryopreservation methods that we tested are not yet ready for implementation in the NPGS.

Chloroplast sequence data differentiate Maleae, and specifically Pyrus, species in the USDA-ARS National Plant Germplasm System

The USDA-ARS National Plant Germplasm System (NPGS) maintains a large collection of Maleae, including 49 Malus taxa, 36 Pyrus taxa, and 24 additional genera with ornamental and plant breeding value. These plant genetic resources are primarily maintained clonally as trees or shrubs in field conditions, and seeds are also conserved for some species. We used NPGS Maleae taxa to assess the genetic diversity across the tribe Maleae and placed Pyrus taxa within this broader context using analytical methods that displayed the genetic relationships as a network, rather than as a traditional dendrogram. Sequence variation from four conserved chloroplast regions unraveled the complex and often reticulate genetic relationships among and within 109 economically important Maleae taxa. In a broad sense, chloroplast haplotypes differentiated Pyrus species within Sections Pyrus and Pashia. The genetic relationships amongst Pyrus species were found to be complex, likely resulting from multiple hybridization and expansion/contraction events during the speciation process. Knowledge of the genetic relationships among Maleae genera and/or species may aid in the selection of materials for use as rootstocks and or breeding (hybridization) programs. Future collection efforts to augment the NPGS accessions within the tribe Maleae will improve the coverage and representation and assure conservation of important Rosaceae genetic resources in the NPGS.

Prioritization ofMalusaccessions for collection cryopreservation at the USDA-ARS National Center for Genetic Resources Preservation

The USDA-ARS National Plant Germplasm System maintains a grafted collection of apple accessions representing 48 taxa in Geneva, NY. Dormant buds of many of these accessions have been routinely cryopreserved at the USDA-ARS National Center for Genetic Resources Preservation (NCGRP) in Fort Collins, CO. In the standard procedure, dormant buds are sent to NCGRP in mid-winter. Scions are cut into 35 mm bud sections and desiccated at -5°C to a moisture content of 25 to 30% (fresh weight basis). Desiccated single-bud sections are then sealed into polyolefin tubes containing 10 to 12 sections each, slow cooled at -1°C h-1 to -30°C, held at -30°C for 24 h, and then placed into the vapor phase of liquid nitrogen (LNV) for long term storage. For viability testing, the buds from one polyolefin tube are rehydrated at 2°C in moist, sterile peat moss and grafted onto rootstocks. For most accessions, this left 3 polyolefin tubes of Malus buds in long-term storage for each accession. For this analysis, successfully cryopreserved accessions were defined as those that have a total of 19 or more predicted viable buds remaining in LNV at NCGRP. Of the 2291 accessions currently cryopreserved at NCGRP, 2052 accessions meet this requirement. Criteria were established to prioritize the apple accessions that are either inadequately backed up at NCGRP or have not yet been processed. These criteria include the likelihood of success in cryopreserving the Malus taxon, the vulnerability of the field trees, the number of viable buds currently stored in LNV, and previous failures in response to the standard procedure.

Utilization of Sunflower Crop Wild Relatives for Cultivated Sunflower Improvement

Sunflower (Helianthus annuus L.) is one of the few crops native to the United States. The current USDA–ARS National Plant Germplasm System (NPGS) crop wild relatives sunflower collection is the largest extant collection in the world, containing 2519 accessions comprising 53 species—39 perennial and 14 annual. To fully utilize gene bank collections, however, researchers need more detailed information about the amount and distribution of genetic diversity present within the collection. The wild species are adapted to a wide range of habitats and possess considerable variability for most biotic and abiotic traits. This represents a substantial amount of genetic diversity available for many agronomic traits for cultivated sunflower, which has a very narrow genetic base. Sunflower ranked fifth highest among 13 crops of major importance to global food security surveyed from the mid‐1980s to 2005 in the use of traits from crop wild relatives. The estimated annual economic contribution of the wild species for cultivated sunflower is between US$267 to 384 million. Most of the value is derived from the PET1 cytoplasm from wild H. petiolaris, disease resistance genes, abiotic salt tolerance, and resistance to imidazolinone and sulfonylurea herbicides. Crop wild relatives provide a wide range of valuable attributes for traditional and molecular breeding, as well as for ecological experimentation, and have enabled rapid advances in ecological and evolutionary genetics. The wild species of Helianthus continue to contribute specific traits to combat emerging pests and environmental challenges and, at the same time, are preserved for future generations.

Total leaf crude protein, amino acid composition and elemental content in the USDA-ARS bamboo germplasm collections

AbstractBamboo shoots and leaves are valuable food sources for both humans and livestock. The USDA-ARS NPGS (National Plant Germplasm System) collections hold 93 bamboo species in 20 genera. Total leaf protein, amino acid composition and elemental content for these important genetic resources had never been quantified. Lack of nutrition information hinders germplasm utilization. The above-mentioned nutritional traits were evaluated from these 93 species in this study. Leaf protein content among bamboo species ranged from 8.12 to 16.33% with an average of 12.84%. This average was higher than 9.0% observed for switchgrass leaves, but considerably lower than 32.48% in cassava leaves. For 18 quantified amino acids, there was more than a twofold variation among the samples evaluated. For 12 quantified mineral elements, there was significant variability from the low end (4.2-fold, 2.27–9.52 mg/g calcium; 4.4-fold, 56.17–246.43 µg/g sodium) to the high end (61.5-fold, 17.67–1087.0 µg/g manganese; 40.8-fold, 42.0–1713.5 µg/g aluminium). Due to their variability in leaf nutritive value, bamboo species should be carefully chosen when they are used as a feedstock. The results from this study will be useful for the bamboo industry, producers and consumers.

A modified mass selection scheme for creating winter-hardy faba bean (Vicia faba L.) lines with a broad genetic base

Winter-hardy faba bean (Vicia faba L.) from northern Europe is represented by a rather narrow gene pool. Limited selection gains for overwintering below −25 °C have restricted the adoption of this crop. Therefore, the faba bean collection maintained by the USDA-ARS National Plant Germplasm System (NPGS) was utilized to broaden this genetic base by identifying potentially new sources of winter-hardiness using a modified mass selection scheme. From an initial source population, bulk-harvested micro-plots of 466 NPGS accessions, four different bulks were formed by harvesting seeds from plants that survived at four locations representing a range of overwintering selection environments across southeastern Washington. These four bulk populations were then mass selected for three cycles based on winter survival along with a selected group of advanced northern European populations or breeding lines at two southeastern Washington locations with divergent climates. This procedure generated breeding materials with winter-hardiness comparable to the northern European populations. We observed that Northern European populations showed slower annual gains in percent survival ( 5%). Further, the frequency of large seeded populations (>80 g × 100 seed−1) was reduced over time, suggesting an association between seed size and overwintering. The breeding materials generated by mass selection are useful for the future improvement of faba bean as a fall-sown pulse or cover crop.

Identification of Loci Associated with Drought Resistance Traits in Heterozygous Autotetraploid Alfalfa (Medicago sativa L.) Using Genome-Wide Association Studies with Genotyping by Sequencing.

Drought resistance is an important breeding target for enhancing alfalfa productivity in arid and semi-arid regions. Identification of genes involved in drought tolerance will facilitate breeding for improving drought resistance and water use efficiency in alfalfa. Our objective was to use a diversity panel of alfalfa accessions comprised of 198 cultivars and landraces to identify genes involved in drought tolerance. The panel was selected from the USDA-ARS National Plant Germplasm System alfalfa collection and genotyped using genotyping by sequencing. A greenhouse procedure was used for phenotyping two important traits associated with drought tolerance: drought resistance index (DRI) and relative leaf water content (RWC). Marker-trait association identified nineteen and fifteen loci associated with DRI and RWC, respectively. Alignments of target sequences flanking to the resistance loci against the reference genome of M. truncatula revealed multiple chromosomal locations. Markers associated with DRI are located on all chromosomes while markers associated with RWC are located on chromosomes 1, 2, 3, 4, 5, 6 and 7. Co-localizations of significant markers between DRI and RWC were found on chromosomes 3, 5 and 7. Most loci associated with DRI in this work overlap with the reported QTLs associated with biomass under drought in alfalfa. Additional significant markers were targeted to several contigs with unknown chromosomal locations. BLAST search using their flanking sequences revealed homology to several annotated genes with functions in stress tolerance. With further validation, these markers may be used for marker-assisted breeding new alfalfa varieties with drought resistance and enhanced water use efficiency.

The vulnerability of US apple (Malus) genetic resources

Apple (Malus × domestica Borkh.) is one of the top three US fruit crops in production and value. Apple production has high costs for land, labor and inputs, and orchards are a long-term commitment. Production is dominated by only a few apple scion and rootstock cultivars, which increases its susceptibility to dynamic external threats. Apple crop wild relatives, including progenitor species Malus sieversii (Ledeb.) M. Roem., Malus orientalis Uglitzk., Malus sylvestris (L.) Mill., and Malus prunifolia (Willd.) Borkh., as well as many other readily hybridized species, have a wide range of biotic and abiotic stress resistances as well as desirable productivity and fruit quality attributes. However, access to wild materials is limited and wild Malus throughout the world is at risk of loss due to human encroachment and changing climatic patterns. The USDA-ARS National Plant Germplasm System (NPGS) Malus collection, maintained by the Plant Genetic Resources Unit in Geneva, NY, US is among the largest collections of cultivated apple and Malus species in the world. The collection currently has 5004 unique accessions in the field and 1603 seed accessions representing M. × domestica, 33 Malus species, and 15 hybrid species. Of the trees in the field, 3,070 are grafted and are represented by a core collection of 258 individuals. Many wild species accessions are represented as single seedlings (non-grafted). The crop vulnerability status of apple in the US is moderate because although there are a few breeders developing new commercial cultivars who also access Malus species, threats and challenges include new diseases, pests, and changing climate combined with industry needs and consumer demands, with a limited number of cultivars in production.

Genetic relationships between wild progenitor pear (Pyrus L.) species and local cultivars native to Georgia, South Caucasus

The genetic diversity of 108 individuals of wild pear species (Pyrus communis subsp. caucasica, P. balansae, P. salicifolia, P. syriaca, P. demetrii, P. bulgarica, P. ketzkhovelii, P. sachokiana) and 35 samples of local and introduced cultivated pears from the country of Georgia were compared to 73 individuals of wild P. communis subsp. caucasica and P. communis subsp. pyraster in the collection of USDA-ARS National Plant Germplasm System (NPGS). Pyrus communis subsp. caucasica from both Georgia and the NPGS, P. communis subsp. pyraster from the NPGS, and P. salicifolia from Georgia were differentiated, based on analysis of eleven microsatellite markers. In addition, accessions of P. communis subsp. caucasica from Georgia were genetically distinct from accessions of the same subspecies in the NPGS collection that originated from other European and Middle Eastern Asian countries. Local pear cultivars in Georgia were genetically similar to P. communis subsp. caucasica and P. balansae growing wild in Georgia suggesting that they may have originated from native pear trees that could serve as unique genetic resources for pear breeding programmes.

Malus sieversii: A Diverse Central Asian Apple Species in the USDA-ARS National Plant Germplasm System

There are several Central Asian Malus species and varieties in the USDA-ARS National Plant Germplasm System (NPGS) apple collection. Malus sieversii is the most comprehensively collected species native to Central Asia. Other taxa such as M. sieversii var. kirghisorum, M. sieversii var. turkmenorum, M. pumila, and M. pumila var. niedzwetzkyana have primarily been donated to the collection by other institutions and arboreta. We sought to determine if genetic and/or phenotypic differences among the individuals that make up the gene pools of these taxa in the NPGS exhibit unique characteristics. Genetic data, based on microsatellite analyses, suggested that the diversity within each taxa is significantly greater than that among taxa. Trait data also revealed very few differences among taxa, the primary characteristic being the dark red fruit coloration and tinted flesh color of the accessions assigned to M. pumila var. niedzwetzkyana resulting from a known single-gene mutation in anthocyanin production. We found that M. sieversii is a highly diverse species with a range in genetic and phenotypic trait variation that includes the characteristics of the other Central Asian taxa of interest. We conclude that the gene pools that comprise the accessions within the NPGS Central Asian Malus collection are highly overlapping with respect to both phenotypic traits and genotypic characters.

Diversity Captured in the USDA-ARS National Plant Germplasm System Apple Core Collection

The USDA-ARS National Plant Germplasm System Malus collection is maintained by the Plant Genetic Resources Unit (PGRU) in Geneva, NY. In the 1990s, a core subset of 258 trees was hand-selected to be representative of the grafted Malus collection. We used a combination of genotypic and phenotypic data to compare the diversity of the 198 diploid trees in the original core subset with that of 2114 diploid trees in the grafted field collection for which data were available. The 198 trees capture 192 of the 232 total microsatellite alleles and have 78 of the 95 phenotypic characters. An addition of 67 specific individuals increases the coverage to 100% of the allelic and phenotypic character states. Several de novo core sets that capture all the allelic and phenotypic character states in 100 individuals are also provided. Use of these proposed sets of individuals will help ensure that a broad range of Malus diversity is included in evaluations that use the core subset of grafted trees in the PGRU collection.

Assessment of molecular diversity and population structure of the Ethiopian sorghum [Sorghum bicolor (L.) Moench] germplasm collection maintained by the USDA–ARS National Plant Germplasm System using SSR markers

The molecular diversity and population structure present in the Ethiopian sorghum collection maintained at the USDA–ARS National Plant Germplasm System (NPGS) has not been studied. In addition, 83 % of the accessions in the Ethiopian collection lack passport information which has constrained their evaluation and utility. Therefore, 137 Ethiopian accessions from NPGS were randomly selected and characterized with 20 strategically selected simple sequence repeat markers. These markers indentified 289 alleles with average polymorphic information content of 0.78. The allele frequency distribution reflects that 62 % of the alleles were rare (<0.05), 17 % range from 0.05 to 0.10, and 22 % were higher than 0.10. Expected and observed heterozygosity were estimated at 0.78 and 0.23, respectively, demonstrating Ethiopia has high sorghum genetic diversity germplasm. Population structure analysis indentified two subpopulations of 77 and 41 accessions, respectively, while a third group was constituted by 19 accessions whose classifications were not defined (i.e. hybrids). Analysis of molecular variances determined variation within subpopulations as the major source of variation. Likewise, genetic differentiation between subpopulations was moderate (Fst = 0.10). These results indicated that a continuous exchange of genes between subpopulations of sorghum exists in Ethiopia. The absence of a well defined population structure positioned this germplasm as an important resource for the study and dissection of agricultural traits by association mapping. However, genetic redundancy analysis indicated the presence of highly related accessions, therefore, strategic selected accessions must be consider prior to phenotype evaluation of larger number of accessions. The Ethiopian collection is composed of highly genetically diverse germplasm, and the genetic information presented herein is valuable to ex situ and in situ conservation programs to promote the use of this germplasm for breeding programs.

Collecting in Central Asia and the Caucasus: U.S. National Plant Germplasm System Plant Explorations

The USDA-ARS National Plant Germplasm System is charged with the preservation of economically important crop plants and their wild relatives. Curators in the System strive to develop collections capturing the genetic diversity of each species. One mechanism for filling gaps in collections is through plant exploration. The USDA-ARS National Germplasm Resources Laboratory, Plant Exchange Office administers funding and coordinates plant explorations for the System. In the past decade, there have been 38 collecting missions in Central Asia and the Caucasus. This area is rich in plant biodiversity and is a center of diversity for many crop species and their wild relatives. The author has had the opportunity to participate in four explorations in the area focusing on wild crop relatives. This included a trip to Kazakhstan targeting Russian dandelion, Taraxacum kok-saghyz L.E. Rodin, a source of natural rubber. In this mission, a total of 22 accessions of T. kok-saghyz and six accessions of other Taraxacum species were collected.

Respuesta de germoplasma de sorgo de Etiopía a la antracnosis.

Se seleccionaron al azar 42 accesiones de la colección de sorgo de Etiopía, la cual se mantiene en el Sistema Nacional de Germoplama de Plantas del Servicio de Investigación Agrícola del Departamento de Agricultura de los Estados Unidos (USDA-ARS, NGPS, por sus siglas en inglés). Se evaluó la respuesta de estas accesiones a la antracnosis durante las épocas de lluvia y de sequía en Isabela, Puerto Rico, en el 2004. Se observó resistencia a la enfermedad en 20 accesiones, mientras trece accesiones resultaron susceptibles a la enfermedad en ambas épocas. Estos resultados indican que la colección de sorgo de Etiopía es una fuente importante de germoplasma resistente a la antracnosis para utilizarse en el mejoramiento del sorgo. Nueve accesiones mostraron una variación en la respuesta a la infección dentro y fuera de las épocas de crecimiento. Estas accesiones también mostraron una baja severidad de infección. Las accesiones susceptibles a la enfermedad mostraron una infección mayor durante la época de sequía; sin embargo, la variación promedio de infección de estas accesiones no fue significativamente diferente para las dos épocas. Aproximadamente 80% de las accesiones mostraron una respuesta similar a la enfermedad a través de las dos épocas de crecimiento. Estos resultados indican que en Puerto Rico se pueden llevar a cabo evaluaciones en alta escala a través de todo el año para examinar más de 7,000 accesiones de sorgo de la colección e identificar germoplasma resistente a la antracnosis.

Availability of Genotypic Data for USDA-ARS National Plant Germplasm System Accessions Using the Genetic Resources Information Network (GRIN) Database

The USDA-ARS National Plant Germplasm System (NPGS) provides critical genetic resources to researchers and breeders worldwide. Users of the NPGS materials need access to data for genetic and descriptive characteristics of the plant materials. New tables and codes have been added to the Germplasm Resources Information Network (GRIN) database to hold raw data relating to molecular markers and alleles. The revised tables accommodate multiple marker types; provide raw data for individuals; accept polyploid data; and provide a record of methods, standards, and control values. A long-term goal is to make the GRIN molecular tables fully interoperable with the National Center for Biotechnology Information database as well as bioinformatic databases (model organism and clade organism databases). The development of this capacity provides critical data infrastructure for future genotype–phenotype association studies and gene discovery.