Dysmorphia in urogenital papilla of Nile tilapia drastically reduces the reproductive performance of this species. However, the study of factors that affect the prevalence of this anomaly have not yet been performed. This study evaluated genetic and environmental (temperature and bacterial agent) effects on the prevalence of urogenital papilla dysmorphia and their impact on reproductive performance, hormonal profile, and biological indices. For such, 2400 larvae from the base generation of a breeding program (without selection or G0) and 3600 larvae from generation 8 (generation obtained after seven generations of selection for body weight - G8) were distributed in 20 tanks of 150 L and exposed to temperature treatments for 60 days after yolk sac absorption (daysa). The G0 and G8 fish were under two and three different ranges of temperature, respectively, as following: control temperature from 25 to 28 °C (CT-G8), moderate temperature from 27 to 30 °C (MT-G8 and MT-G0), and high temperature from 30 to 33 °C (HT-G8 and HT- G0), totaling 5 treatments with 4 replicates. After 60 days, tilapias from the different treatments were reared in the same tank and identified by PIT tags when they achieved 50 g. The animals at six months of age were sexed, and females have the urogenital papillae classified as normal or abnormal (mild or severe), and ten abnormal females were sampled for bacteriological evaluation. The tilapia females were reevaluated at 8 months of age to determine the prevalence of the dysmorphia. To evaluate the impact of treatments on reproductive performance, 70 females per treatment were used in a reproductive assay for 8 weeks. At the end of reproductive assay, the blood plasma was collected to determine the levels of 17-beta-estradiol and 11-ketotestosterone. All samples evaluated were negative in bacteriological analysis. The prevalence of urogenital papilla dysmorphia in CT-G8, MT-G8, HT-G8, MT-G0 and HT-G0 were 20.49 %, 61.59 %, 89.48 %, 68.39 %, and 43.70 %, respectively. The dysmorphia prevalence was similar only between MT-G0 and MT-G8 (p > .05). Except by the HT-G0 group, all treatments presented significant reduction close to 70 % in the reproductive performance in comparison to the control (p < .05). Animals with severe dysmorphia exhibited the highest values of gonadosomatic and viscerosomatic indexes. The HT-G8 group presented a higher concentration of estradiol in plasma, but like MT-G0 group. The CT-G8 showed the highest value of 11-ketotestosterone among all treatments. In conclusion, the rearing of Nile tilapia in temperature close to 25 °C in the first 60 daysa is recommended to produce an efficient broodstock.