This study aimed at comparing the two most commonly utilized methods for measuring urinary F2-isoprostanes, currently considered one of the best available markers of in vivo lipid peroxidation. The F2-isoprostanes were measured in 24-h urine samples from 14 male subjects using electron capture negative ionization gas chromatography–mass spectrometry (ECNI–GCMS) with 8-iso-PGF2α-d4 as an internal standard and compared with levels obtained using an enzyme immunoassay (EIA, 8-iso-PGF2α kit, Cayman Chemical Co.). The methods were compared using Pearson correlation coefficients, and Bland–Altman plots were constructed for the difference in F2-isoprostane against the average F2-isoprostane measured by either method. Weighted least-products regression was used to determine fixed bias (where there is a consistent difference between the methods) and proportional bias (where one method gives values higher or lower than the other method by an amount proportional to the size of the measurement). The correlation between F2-isoprostane levels obtained using EIA and GCMS methods, although significant, was poor (r = 0.628, P < 0.02). Comparison of the methods using the Bland–Altman analysis showed that there were wide limits of agreement between the two methods with only 28% of the values falling within the 95% confidence limits for the difference. The GCMS gave higher values with a mean difference of 298.1 pM (636.6, −40.2; P = 0.079), and a near significant linear association between the differences and the mean F2-isoprostane level (r = −0.559, P = 0.05). Weighted least-product regression analysis confirmed the presence of both significant fixed and proportional bias with the EIA giving lower levels of F2-isoprostanes at low concentrations and higher levels at higher concentrations. The cross-reactivity in the EIA of 8-iso-15(R)-PGF2α and 9β-PGF2α which coelute with the F2-isoprostane peak measured by GCMS was very low, 0.2 and 0.1%, respectively. The proportional bias observed between the methods may in part be due to differences in the relative amounts of 8-iso-15(R)-PGF2α, 9β-PGF2α, and 8-iso-PGF2α with increasing lipid peroxidation. This study shows that the measurements of F2-isoprostanes by EIA and GCMS are not equivalent. Therefore, comparison of levels derived using a GCMS method which estimates concentration from a peak encompassing a number of F2-isoprostane isomers, and levels derived from enzyme immunoassay measuring a specific isoprostane, may be inappropriate.
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