Diminishing availability of urban land in metropolitan cities such as Jakarta resulting in high-density settlements, which impacted the quality of life of the urban village communities. One of the government’s efforts to solve this problem is by building subsidized apartments. However, this effort mainly focused on the land scarcity and the required housing aspects, while ecological and environmental roles toward the life quality of the dwellers are often set aside though very influential. On the other hand, Jakarta is very vulnerable to natural disasters related to water, such as flooding caused by stormwater runoff which cannot be accommodated by the insufficient capacity of the surrounding environment. Therefore, the development of urban settlements in Jakarta has to pay more attention to integrate ecology and zero runoff management from the design conception phase. A vertical village residential design in West Jakarta that integrates these two aspects through ecological architecture elements (nature, water, human and environment) was proposed as a role model design for vertical village housing. Various water design features have been creatively designed and integrated into the landscape and building elements resulting in zero runoff and an ecologically significant built environment.