With climate change and urbanization development, urban areas are facing more serious floods. As a result, hydrological and hydrodynamic models have recently shown a broad application prospect in urban flood simulating and forecasting. For the area with rich inland rivers, urban water resources can be effectively regulated and redistributed through river networks and hydraulic structures scheduling. However, the lack of research on the effect of scheduling becomes a major limitation in model applications. Based on a coupled hydrodynamics model, the current study simulates the flooding response to the combined rainstorm and scheduling scenarios and analyzes the river overflow at the community scale. The result indicated that three local regions in the Jin'an study area are inundated easily. The locations near Qinting Lake were more sensitive to the water regulation rules than others. In the model of control on Qinting Lake, section A is more sensitive to the schedule control than section B, while for section A, the water level increased by 1.44% under the return period (RP) (10 a), and the rate changed to 2.64% under the RP (100 a). The differences in inundation from various scenarios are relatively small. In the mode of joint discharge rules under RP (50 a), the water level changed by 4.77% in section A and 1.24% in section B. The simulation at the community scale considers the overflow process, and the results indicated that the total inundation area decreased by 12.8 ha under joint schedules. The significant effects to alleviate urban inundation mainly come from the decreased flood overflow from the channel, but not from the flooding nodes. This study provides promising references for urban flood management.