The study of radioactivity in the phosphate fertilizers and waters of the Kanovci area was performed in order to determine the influence of the application of phosphate fertilizers on the radioactivity of waters. The activity of 226Ra, 228Ra, 235U and 238U was measured in different types of phosphate fertilizers and waters by means of γ-ray spectrometry. Surface water, water from drainage channels, shallow groundwater and deep groundwater samples were collected from the Kanovci agricultural and well field area in Eastern Slavonia, where phosphate fertilizers have been used for the past 15 years. 137Cs was also measured in water samples. The typical phosphate fertilizer used in the Kanovci area contains 75 Bq kg −1 of 226Ra, 9 Bq kg −1 of 228Ra, 52 Bq kg −1 of 235U and 1120 Bq kg −1 of 238U. The estimated annual deposition of uranium and radium in soils of the agricultural and well field area in Kanovci is: 4.5 Bq m −2 for 226Ra, 0.5 Bq m −2 for 228Ra, 3.1 Bq m −2 for 235U and 67 Bq m −2 for 238U. The greatest concentrations of both uranium isotopes are measured in water from drainage channels with a mean value of 120 Bq m −3 for 238U and 5.5 Bq m −3 for 235U. The concentrations of both radium isotopes generally increase with depth of water as distinct from uranium, whose concentrations in deep groundwater are much lower. The highest concentrations of 137Cs were measured in water from drainage channels; it was not detected in deep groundwater. The 238U/ 226Ra activity ratio (AR) is the highest in water from drainage channels and the Bosut River, while in deep groundwater the ratio is only 1.6. Results indicate that high uranium concentrations in surface water, shallow groundwater and water from drainage channels are caused by phosphate fertilizer application in agriculture on the Kanovci area.