Endophytic bacteria derived from metal hyperaccumulators have demonstrated potential for improving copper (Cu) remediation in host plants; however, their potential application in non-host crops remains unclear. In this study, endophytic bacteria isolated from Commelina communis growing in mining areas and their mitigation effects on Cu toxicity in non-host rice were comprehensively evaluated. Among the isolated endophytes, Bacillus sp. D2 exhibited the highest Cu resistance, producing indole-3-acetic acid (IAA) at a concentration of 0.93mg/L and exhibiting ACC deaminase activity of 13.88μmol/mg·h under 200mg/L Cu stress. Pot-experiment results revealed that Bacillus sp. D2 addition significantly increased the biomass and lengths of shoots under Cu stress conditions by 47.6% and 14.2%, respectively. Furthermore, Bacillus sp. D2 inoculation significantly reduced oxidative damage, enhanced antioxidant responses, and modulated plant hormone levels in Cu-exposed rice. Notably, Bacillus sp. D2 inoculation substantially decreased the upward translocation of Cu from underground roots to aboveground tissues. Moreover, Bacillus sp. D2 effectively alleviated Cu toxicity in rice plants by regulating the expression levels of genes involved in antioxidant systems (tAPx, Csd2, and FeSOD1), Cu transporters (AtPDR8 and HMA3), as well as metallothionein (MT2c). These results highlight the value of Bacillus sp. D2 as a bioinoculant for improving crop growth while reducing the risks associated with copper contamination in naturally Cu-contaminated soils.
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