Lanthanide upconversion luminescent materials featuring multi-peak and tunable emissions allow for ratiometric luminescence thermometry in a remote detection manner. However, wide explorations are still required to develop relevant materials for efficient thermometric performances. Herein, Yb3+/Er3+ co-doped non-stoichiometric analogues of bismuth oxyfluoride were obtained by simply tuning the F−/(Bi3+ + Ln3+) molar ratio of the reactants in a solid-state reaction method, for the first time. We achieved simultaneous regulations in composition, structure, morphology, and upconversion luminescence properties of BiOxFy:Yb/Er (2/1 mol%) microcrystals. Compositional analysis revealed not only the predictable increase of fluorine content, but also the constant O/(Bi + Ln) atomic ratios in all nominal BiOxFy:Yb/Er. Experimental results showed the structure and morphology evolutions from hexagonal-phase micro-flowers, to tetragonal-phase microplates, and further to orthorhombic-phase irregular microcrystals. Benefiting from adjustable composition, structure and morphology, up-conversion luminescence with adjustable intensity and color was obtained. Temperature dependent upconversion properties and ratiometric thermometric performances based on the thermally coupled levels, 2H11/2 and 4S3/2 of Er3+, were explored. BiOF:Yb/Er, BiO0.67F1.66:Yb/Er, and BiF3:Yb/Er microcrystals were found as suitable temperature sensing candidates with operating temperature range as wide as 298−673/723 K, high relative sensitivity up to 1.24% K-1, and minimum temperature uncertainty of 0.15 K. These results benefit not only further explorations for high-performance lanthanide-based luminescence thermometers, but also the chemistry of fluorides made from the solid-state reaction method.