ABSTRACT The Santiago-Guadalajara River (SGR) is one of the most polluted river systems in Mexico because there is still a significant amount of untreated industrial, agricultural and municipal wastewater discharged. A sediment monitoring campaign was carried out at 25 sampling points located in the Santiago and Zula rivers, as well as in their main tributaries. In this work, six indices and criteria were selected to assess the level of metal contamination in the main and tributary streams. The following sequence of metals of concern were identified (mean values in mg kg-1 dry basis): Zn (71.92)> Cu (35.22)> Cr (23.82) > Ni (14.95)> Pb (10.82) > As (2.82) > Cd (2.40) > Sb (2.06). Previous studies in the region agree that Al, Fe, Mn, and Ba are part of the natural lithologic composition of the basin, and what is found in the sediments is likely the result of the natural rock weathering processes rather than an anthropogenic contamination process. According to the proposed assess methods Cu, Cr, Ni, Pb, and Zn were found in low to moderate levels of contamination, and Sb and Cd were found in considerable to very high contamination levels in several of the monitored stations.