In the PEM fuel cell stack, the fibrous porous gas diffusion layer (GDL) provides mechanical support for the membrane assembly against the compressive loads imposed by bipolar plates. In this study, a new mechanistic model is developed using fundamental beam theory that can accurately predict the mechanical deflection of GDL under compressive loads. The present analytical model is built on a unit cell approach, which assumes a simplified geometry for the complex and random GDL microstructure. The model includes salient microstructural parameters and properties of the fibrous porous medium including: carbon fiber diameter, fiber elastic modulus, pore size distribution, and porosity. Carbon fiber bending is proved to be the main deformation mechanism at the unit cell level. A comprehensive optical measurement study with statistical analysis is performed to determine the geometrical parameters of the model for a number of commercially available GDL samples. A comparison between the present model and our experimental stress–strain data shows a good agreement for the linear deformation region, where the compressive pressure is higher than 1 MPa.