Underwater Video Surveys Research Articles

A Proposed Method for Assessing the Spatio-Temporal Distribution of Carcharhinus melanopterus (Quoy and Gaimard, 1824) in Shallow Waters Using a UAV: A Study Conducted in Koh Tao, Thailand

In this study, we propose a method for assessing the temporal and spatial distribution of Carcharhinus melanopterus in shallow waters using unmanned aerial vehicles (UAVs). Aerial surveys were conducted in Tien Og Bay (Koh Tao, Thailand) thrice daily (morning, afternoon, evening) along a 360 m transect at a 30 m altitude. Environmental factors, including cloudiness, sea conditions, wind, tide, and anthropogenic disturbance, were recorded for each time slot. We developed a Python/AppleScript application to facilitate individual counting, correlating sightings with GPS data and measuring pixel-based length. Abundance varied significantly across time slots (p < 0.001), with a strong morning preference, and was influenced by tide (p = 0.040), favoring low tide. Additionally, abundance related to anthropogenic disturbance (p = 0.048), being higher when anthropogenic activity was absent. Spatial distribution analysis indicated time-related, sector-based abundance differences (p < 0.001). Pixel-based length was converted to Total Length, identifying juveniles. They exhibited a strong sector preference (p < 0.001) irrespective of the time of day. Juvenile abundance remained relatively stable throughout the day, constituting 94.1% of afternoon observations. Between 2020 and 2022, an underwater video survey was conducted to determine the sex ratio of the individuals. Only females and juveniles were sighted in the bay.

Incorporating environmental factors is critical for determining conservation baselines for relative abundance of sharks on coral reefs

Populations of sharks, including those inhabiting coral reefs, have experienced dramatic global declines. Setting appropriate targets for restoring reef shark populations requires estimates of expected relative abundances in the absence of intense fishing. It is therefore important to identify factors that drive the carrying capacity of sharks in relatively intact reef systems and to determine whether expected shark abundance varies according to easy to assess variables. These variables could then be used by managers for setting restoration targets, or prioritizing resource allocation, for particular areas in the absence of detailed data. French Polynesia, the world’s largest shark sanctuary, provides a model system for addressing this question. We used baited remote underwater video surveys to assess relative abundance of sharks on 35 reefs across the broad geographic range of French Polynesia. Boosted regression tree models revealed that relative abundance of sharks varied significantly with island geomorphology. Overall, relative shark abundances at high islands were nearly 3 times lower than on atolls, and among atoll geomorphology types, open atolls had abundances nearly 20% higher than closed atolls. Island group, temperature, and net primary productivity had more limited effects. Human pressure (measured as market gravity) was not a significant factor. Although species-specific patterns varied, our findings suggest that environmental factors, particularly island geomorphology, should be taken into account when setting shark abundance recovery targets. Using this easy to assess factor can facilitate the allocation of conservation effort and improve assessments of species recovery efforts for islands in the Indo-Pacific region.

The fish–mangrove link is context dependent: Tidal regime and reef proximity determine the ecological role of tropical mangroves

AbstractTropical mangroves are known to support fish production, but natural variability in the link between mangrove habitats and fish populations undermines our ability to manage, conserve and restore this ecological relationship. This is largely due to undefined context‐dependence in the use of mangroves by fish. We collected a spatially extensive dataset of 494 mangrove fish assemblages using standardised Remote Underwater Video surveys of mangrove edge habitats from five environmentally heterogenous regions in the Indo‐Pacific. We used machine learning methods to define contextual limits of the use of mangroves by reportedly mangrove‐affiliated fish. We found that tidal range and proximity to coral reefs were the most important contextual predictors of the use of mangroves by most taxa. We established data‐driven threshold values for important contextual predictors of the use of mangroves by fish, offering new insights into the variable role played by tropical mangroves in supporting fish life histories. Where mangroves occur as part of reef seascapes in regions with limited tidal range (<1.5 m), they appear to serve an important juvenile habitat function for a wide spectrum of reef fish. In regions with substantially larger tidal ranges, mangroves appear to only support certain reef species with coastal life histories. Coastal and estuary fish were able to use mangroves in a wide variety of non‐reef contexts. We demonstrate that key thresholds in environmental context can govern the functional role of mangroves, with strong implications for the role of other habitats in coastal seascapes.

Low diversity and abundance of predatory fishes in a peripheral coral reef ecosystem.

Semi-enclosed seas are often associated with elevated local threats and distinct biogeographic patterns among marine fishes, but our understanding of how fish assemblage dynamics vary in relation to relatively small semi-enclosed seas (e.g., the Gulf of Aqaba) remains limited. Baited remote underwater video surveys (n = 111) were conducted across ~300 km of coral reef habitats in the Gulf of Aqaba and the northern Red Sea. A total of 55 predatory fish species were detected, with less than half of all species (n = 23) observed in both basins. Relative abundance patterns between the Gulf of Aqaba and the northern Red Sea were variable among taxa, but nearly twice as many predatory fish were observed per unit of effort in the northern Red Sea. In general, assemblages in both basins were dominated by three taxa (Epinephelinae, Carangidae, and Lethrinidae). Large-bodied and threatened species were recorded at very low abundances. Multivariate analysis revealed distinct assemblage structuring of coral reef predators between the Gulf of Aqaba and the northern Red Sea. Most of the species driving these differences were recorded in both basins, but occurred at varying levels of abundance. Environmental factors were largely unsuccessful in explaining variation in assemblage structuring. These findings indicate that biological assemblages in the Gulf of Aqaba are more distinct than previously reported and that reef fish assemblage structuring can occur even within a relatively small semi-enclosed sea. Despite inter-basin assemblage structuring, the overall low abundance of vulnerable fish species is suggestive of overexploitation in both the Gulf of Aqaba and the northern Red Sea of Saudi Arabia. As the region surveyed is currently undergoing large-scale coastal development, the results presented herein aim to guide spatial management and recovery plans for these coral reef systems in relation to this development.

Coral reefs in the northeastern Saudi Arabian Red Sea are resilient to mass coral mortality events

We conducted an integrated survey combining visual census and baited remote underwater video survey on the coral reefs in the northeastern Red Sea and examined their health by comparing the baseline information from two decades ago. The mean coverage of the corals of all stations was 36 %, including 32 % stony corals and 4.0 % soft corals, significantly higher and lower to previous baseline. Observed high proportion of dead corals indicated the occurrence of the events of mass mortality, and the heating events were the most likely cause. Similar levels of coral coverage compared to two decades ago indicated their resilience to past events with mass coral mortality. Small proportions of macroalgae and sea urchins indicated that they might be controlled by their predators frequently observed in both visual census and underwater video survey. Regular monitoring and careful development plans are needed to safeguard these invaluable reefs.

Calibration of fish counts in video surveys: a case study from the Southeast Reef Fish Survey

Changes to sampling gears or vessels can influence the catchability or detectability of fish, leading to biased trends in abundance. Despite the widespread use of underwater video cameras to index fish abundance and the rapid advances in video technology, few studies have focused on calibrating data from different cameras used in underwater video surveys. We describe a side-by-side calibration study (N = 143 paired videos) undertaken in 2014 to account for a camera change in the Southeast Reef Fish Survey, a regional-scale, multi-species reef fish survey along the southeast United States Atlantic coast. Slope estimates from linear regression for the 16 species included in the analyses ranged from 0.21 to 0.98, with an overall mean of 0.57, suggesting that original cameras (Canon Vixia HF-S200) observed an average of 43% fewer fish than newer cameras (GoPro Hero 3+). Some reef fish species had limited calibration sample sizes, such that borrowing calibration information from related or unrelated species was justified in some cases. We also applied calibrations to 11-year video time series of relative abundance of scamp Mycteroperca phenax and red snapper Lutjanus campechanus (N = 13,072 videos), showing that calibrations were critical to separating changes in camera sightability from true changes in abundance. We recommend calibrating data from video cameras anytime changes occur, and pairing video cameras to the extent possible to control for the spatial and temporal variability inherent in fish populations and environmental conditions. Following these guidelines, researchers will be able to maintain the integrity of valuable long-term video datasets despite intentional or unavoidable changes to video cameras over time.

When bioregionalisation emphasises the presence of vulnerable marine ecosystem indicator species in Nephrops fishing grounds: Evidence in the Bay of Biscay/Irish Sea continuum

Under the apparent homogeneity of soft-bottom ecosystems hides an heterogeneity of habitats driven by variations in sediment composition and environmental conditions.Using an extensive underwater video survey dataset, we explored the taxonomic diversity of soft-bottom Nephrops fishing grounds and their environmental drivers on a large latitudinal scale from the Bay of Biscay to the Irish Sea (Northeast Atlantic). Biogeographical network clustering highlighted indicator species of the different communities and a Between-Class Analysis characterised the abiotic factors influencing each community.Our analyses confirmed a biogeographical limit between the Bay of Biscay and the northern areas driven by a latitudinal temperature gradient and highlighting the distribution of Lusitanian and Boreal species. Mobile fish and crustaceans, and sessile filter-feeder assemblages differed along a depth, bottom current and fishing gradient. Some species assemblages covered the whole latitudinal range, implying a greater influence of optimal environmental surroundings rather than their geographical position. Vulnerable Marine Ecosystem indicator taxa such as Virgularia mirabilis and Pennatula phosphorea are potential indicator species of some clusters, while harvested species such as Nephrops norvegicus or mobile fish characterized other bioregions.Spatial knowledge produced in this study could be integrated as biodiversity layers together with fisheries activities layers in decision support tools such as Marine Spatial Planning in order to define compromise between conservational and fishing objectives. Outcomes of management scenarios would then consider the whole species stock (e.g. Nephrops) rather that local populations independently.

The Hidden Diversity of Temperate Mesophotic Ecosystems from Central Chile (Southeastern Pacific Ocean) Assessed through Towed Underwater Videos

The largely unexplored diversity in temperate mesophotic ecosystems (TME, ~30–150 m depth) has attracted much attention over the past years. However, the number of studies and knowledge of TME diversity and ecology remains limited and geographically restricted. The absence of information on how assemblages vary across environmental gradients and with depth for most regions also limits our capacity to delimit conservation areas and devise management plans effectively. This study focuses on TME from central Chile and describes the depth distribution of reef fishes and benthic invertebrates and algae for the first time. Through the analysis of towed underwater video surveys between 4.7–95.5 m in multiple sites, we show that total reef fish density and richness decrease with depth but increase with local topographic complexity. The depth-related density varies among fish species and trophic groups, and it reverses in the case of Sebastes oculatus, which increases in density with depth. Sponges and gorgonians dominate benthic assemblages below 20 m depth, and brachiopods and anemones increase below 40 and 60 m, respectively. Some of these species form animal forests which, to some extent, replace the shallow-water kelp forests as structural habitat providers. Nevertheless, the reef fish and benthic community do not show a clear structure with depth or across studied sites. We highlight the urgency to intensify and expand the quantitative characterization of these communities, through this and other methodologies, to better define ecological patterns and advance towards conservation plans for TME, including the Souteastern Pacific region.

Using fishers’ knowledge to determine the spatial extent of deep-water spawning of capelin (Mallotus villosus) in Newfoundland, Canada

IntroductionOn the Newfoundland-Labrador Shelf, Canada, capelin (Mallotus villosus) is a key forage fish that migrates annually from offshore to spawn within coastal embayments. Although capelin are thought to primarily spawn on beaches in this region, they also spawn subtidally in deeper water (5–40 m), where their eggs remain throughout incubation. The spatial extent of subtidal (i.e. “deep-water”) spawning habitat in coastal Newfoundland is unknown and is a research priority for fishers and management.MethodsWe collaborated with capelin fishers to identify putative deep-water spawning sites as a first step in determining the contribution of deep-water spawning to capelin recruitment. Given limited fine-scale coastal bathymetry and seabed habitat type data, which impeded spatial modeling to determine suitable capelin spawning habitat, this science-industry research collaboration was key to addressing this knowledge gap.ResultsThrough two years of multi-bay fisher interviews, 84% of interviewed fishers (56 interviewees) reported having observed deep-water spawning and identified a broad distribution of putative spawning sites throughout coastal Newfoundland. The majority of fishers indicated inter-annual variation in beach and deep-water spawning habitat use, and most interviewees linked this variation to temperature and capelin abundance. Further collaborations with fishers during boat-based surveys, we sampled 136 unique sites within 12 search areas in eastern Placentia Bay and 26 unique sites within six search areas in Bonavista Bay. Underwater video surveys combined with sediment sampling revealed seven previously undocumented deep-water spawning sites.ConclusionThe deep-water spawning areas derived from these fisher interviews can now be used to build a time series for monitoring capelin spawning habitat use alongside citizen-based beach monitoring data, as a general capelin stock health indicator in a weight of evidence approach for the science advisory process.

Assessing discard consumption dynamic in shallow coastal environment using underwater video

Food webs are typically studied with respect to predator-prey interactions while often neglecting to address the role or importance of scavenging (i.e. carrion consumption) on their structure and functioning. In some environmental contexts, scavenging can play a key role in supporting populations and communities as exemplified by seabirds feeding on fisheries discards. Yet, a substantial part of fisheries discards sinks in the ocean where the range of consumers is most likely underestimated, owing to a lack of comprehensive understanding of the scavenging ability of marine fauna and local-scale empirical studies. Here, we deployed baited remote underwater video surveys (BRUVs) using discarded fish as baits to study the taxonomic richness of consumers, their interactions and consumption dynamic of discards in shallow coastal fishing grounds subject to discarding (Bay of Bourgneuf, North East Atlantic, France). We show that discards attract and are consumed by a wide taxonomic and trophic diversity of species. Interestingly, only one species observed is considered an obligate scavenger, while scavenging is little known or considered anecdotal in most other identified taxa. Analysis of consumption dynamic and interactions around discards revealed intra and interspecific competition among discard consumers as well as successions between consumers involved in predator-prey interactions. Data also suggests that decapods may facilitate discard consumption by non-piscivorous fish by generating scraps during consumption. We argue that underwater video surveys provide a valuable tool to better assess the occurrence and extent of facultative scavenging behaviors within marine communities and understand its role in food web dynamic.

Observation of juvenile Eastern Blue Groper (Achoerodus viridis) on remnant oyster reefs in New South Wales, Australia.

Observation of juvenile Eastern Blue Groper (Achoerodus viridis) on remnant oyster reefs in New South Wales, Australia.

Geomorphological drivers of deeper reef habitats around Seychelles

Mesophotic (30–150 m) and rariphotic (150–300 m) deeper reef habitats are important from an ecological and conservation perspective, yet remain understudied. Key knowledge gaps exist on the environmental patterns and processes that drive and shape their geographical distributions. Understanding these is particularly important for regions as the Western Indian Ocean, where deeper reefs are poorly known but support food security and host economically important species. Spatial predictive models of assemblage occurrences, using terrain variables as predictors, offer a solution to address knowledge gaps around deeper reef distributions. We identified relationships between seafloor geomorphology, quantified at multiple scales, and sessile benthic assemblages in four atoll seascapes in Seychelles using terrain models derived from high-resolution multibeam sonar and underwater video surveys. Using random forests and boosted regression trees, we demonstrated that terrain derivatives extracted over multiple scales perform as reliable predictors of deeper reef assemblages. The most influential environmental predictors were depth, distance to shore, topographic complexity, slope and curvature and substrate characteristics. The relative importance of predictors was explained by assemblage functional characteristics. Assemblage–environment relationships were used to produce probability distribution maps that showed similar distributional patterns for identified assemblages across locations, with high occurrence probabilities linked to complex geomorphological structures. Our results help contribute to a consistent baseline understanding of the relationship between seascape structure and mesophotic reef ecosystems in this area. Complex geomorphological structures, including terraces and paleoshorelines, supported high densities of mesophotic assemblages and could be considered priority habitats for management.

Remnant oyster reefs as fish habitat within the estuarine seascape

Interest in oyster reef conservation and restoration is growing globally, but particularly in Australia, it is unclear the extent to which oyster reefs complement (versus replicate) habitat provisioning by other structured habitats in the seascape. Remote underwater video surveys of two east Australian estuaries revealed that at high tide, oyster reefs not only supported distinct fish communities to bare sediments but also to adjacent seagrass beds and mangrove forests. Fish observations in oyster reefs were close to double that of mangroves and seagrass, with species richness, abundance, feeding and wandering behaviours similar. Several species of blenny and goby were unique to oyster reefs and oyster-containing mangroves, whilst recreationally fished species such as bream and mullet were more abundant on oyster reefs than in other habitats. Resolving the association between oyster reefs and fish species within the broader seascape will assist in developing restoration and management strategies that maximise fisheries benefit.

Unoccupied aerial video (UAV) surveys as alternatives to BRUV surveys for monitoring elasmobranch species in coastal waters

Abstract Effective conservation strategies are founded by baseline information on abundance and diversity estimates. Method choice can influence the success of baseline surveys as method performance is variable and needs to be selected based on habitat and taxa. Here, we assess the suitability of unoccupied aerial vehicle (UAV) surveys, specifically multi-rotor “drones”, and baited remote underwater video (BRUV) surveys in shallow-water habitats to quantify elasmobranch abundance and diversity in the Saudi Arabian central Red Sea. Our results show that the number of elasmobranchs h−1 observed using UAV surveys exceeded that of BRUV surveys by two orders of magnitude, indicating that the increased spatial coverage of UAV surveys is beneficial for long-term monitoring projects. BRUV surveys detected a greater number of species within reef habitats, whereas UAV surveys detected a greater number of species within sandflat habitats, indicating the value of multi-method approaches for regional biodiversity studies. Here, we provide the first insight into elasmobranchs associated with sandflat habitats in Saudi Arabia, emphasising the importance of these habitats to stingrays and the need for further information on elasmobranch habitat use to better inform management and conservation efforts in the face of rapid coastal developments across the Red Sea.

A Preliminary Qualitative Study of Baited Remote Underwater Video Surveys (BRUVS) on Fish Assemblage in the Coastal Waters of Maine

The use of baited remote underwater video surveys (BRUVS) has become increasingly prevalent in temperate ecosystems in recent years as this technique provides data on ecosystem structure and species composition. To date, no BRUVS have been performed in the Saco Bay due to natural obstacles within the region. Our modified BRUVS resulted in 66 hours of video recorded over 2 sampling periods with 17 different species of various taxa observed. A total of 623 individuals was observed based on MaxN. These baited remote underwater video surveys successfully provided ecosystem data; therefore, we suggest that it would be an ideal complementary sampling method for this region.

De novo reefs: Fish habitat provision by oyster aquaculture varies with farming method

Aquaculture industries have the capacity to produce positive ecosystem service benefits, such as the provision of habitat to wild animals. Oyster cultivation is the oldest and largest aquaculture industry in south-eastern Australia. Oyster spat are grown to marketable size in rack-and-rail (‘racks’) or longline-and-basket (‘baskets’) configurations, which add structure to estuarine waters. This study assessed: (1) how the fish communities associated with oyster farms vary with production method; (2) how communities of fish utilise oyster infrastructure, as compared to adjacent natural habitats; and (3) whether oyster infrastructure can serve as de facto oyster reefs by supporting similar fish communities. Remote underwater video surveys, conducted during summer and winter of 2 study years, revealed that fish observations and species richness were generally greater for rack than basket cultivation. Both types of oyster farms supported at least as many species of fish as adjacent natural habitats, including oyster reef, seagrass, mangrove and bare sediment. Fish communities were, in general, most similar between racks and baskets and most dissimilar between racks and bare sediments. Oyster farms supported species of fish otherwise limited to habitats with wild oysters, and unique harvested fish species were observed more frequently at racks. Fish use of oyster-growing infrastructure for foraging and shelter mirrored use of natural biogenic habitats. Overall, this study suggests that the oyster aquaculture infrastructure can support fish communities with species composition similar to those of natural biogenic habitats, although this service is dependent on farming method. Ecosystem services provided by aquaculture should be considered in estuarine habitat enhancement, conservation and restoration.

Automated Quantification of Brittle Stars in Seabed Imagery Using Computer Vision Techniques.

Underwater video surveys play a significant role in marine benthic research. Usually, surveys are filmed in transects, which are stitched into 2D mosaic maps for further analysis. Due to the massive amount of video data and time-consuming analysis, the need for automatic image segmentation and quantitative evaluation arises. This paper investigates such techniques on annotated mosaic maps containing hundreds of instances of brittle stars. By harnessing a deep convolutional neural network with pre-trained weights and post-processing results with a common blob detection technique, we investigate the effectiveness and potential of such segment-and-count approach by assessing the segmentation and counting success. Discs could be recommended instead of full shape masks for brittle stars due to faster annotation among marker variants tested. Underwater image enhancement techniques could not improve segmentation results noticeably, but some might be useful for augmentation purposes.

Assessing trap bias in the endemic Australian genus of freshwater crayfish,

Freshwater crayfish are among the most endangered animal groups in the world. Appropriate management requires an understanding of sampling bias when assessing their distribution and abundance. We evaluated the effectiveness of a variety of sampling methods for detecting freshwater crayfish (genus Euastacus) in situ and potential biases towards individual-level traits associated with these methods. We also experimentally manipulated the presence of crayfish within opera house traps to determine the effects of trap residency on capture rate and the characteristics of crayfish approaching the traps. Baited hoop nets and baited remote underwater video surveys (BRUVS) detected significantly more crayfish than did unbaited video surveys (RUVS). Crayfish captured in baited hoop nets were significantly larger than were crayfish measured in the BRUV and RUV surveys, suggesting that hoop nets were biased to capturing larger animals. The experiment demonstrated that a greater number of crayfish entered empty rather than occupied traps; however, there were no differences in their body sizes. We highlight the importance of optimising sampling for freshwater crayfish to ensure reliable and robust population estimates. This is of critical importance as many have highly restricted ranges and face numerous threats. We contend that this will assist in informing conservation strategies to protect aquatic species at risk.

Nocturnal surveys reveal novel insights into the community dynamics of an anchialine ecosystem from The Bahamas

Understanding the composition and structure of marine animal assemblages across space and time is essential in the establishment of effective management frameworks, particularly for holistic approaches to ecosystem conservation. Baited remote underwater video (BRUV) surveys are a well-established tool used in assessing relative abundances of marine fauna but are not commonly used in enclosed environments such as lakes. Sweetings Pond is an anchialine lake situated on the island of Eleuthera in The Bahamas that remains relatively undocumented, with only a single census available from 1983, yet has experienced an increase in stress from anthropogenic activity. Here, we investigated differences in community composition between sites and attempted to identify the species/benthic components driving changes using baited video surveys, before exploring differences in community structure between day-night periods. Nine species were identified over the 3780 min of BRUV footage analyzed, which was comparable to 1983 estimates. No difference in animal assemblages was seen between sites and no correlation with benthic composition was present. However, nocturnal replicates displayed higher median animal abundance and species richness than diurnal replicates, potentially resulting from a sequential food web aggregation around the light source. A number of unique, opportunistic feeding behaviors were also observed which opens avenues for future study. Overall, this study presents BRUVS as a viable and streamlined tool for managers of enclosed aquatic ecosystems to rapidly assess the system's macrofauna across day-night periods, supporting the requirements of an ecosystem-based management approach.

Baited Remote Underwater Video Surveys to assess relative abundance of sharks and rays in a long standing and remote marine protected area in the Arabian Gulf

Marine Protected Areas (MPAs) are increasingly advocated for the protection of key functional groups like elasmobranchs (sharks and rays). However, substantial uncertainty remains regarding which species can benefit from MPAs, crucial information to support policy and management plans. Using Baited Remote Underwater Video Surveys (BRUVS), a study was conducted on Sir Bu Nair Island in the United Arab Emirates encompassing a range of depths and habitat types within the MPA borders. A total of 96 deployments with 117 video hours recorded were analysed to assess the diversity, relative abundance and habitat associations of elasmobranchs. Surveys recorded 40 elasmobranchs including two species of sharks and seven species of rays. Overall, catch per unit effort for elasmobranchs was slightly higher overall, lower for sharks, and higher for rays compared to a similar study using BRUVS across United Arab Emirates waters. Two reef-associated species in early life stages, blacktip reef shark (Carcharhinus melanopterus) and Halavi guitarfish (Glaucostegus halavi) listed as Near Threatened and Critically Endangered on the IUCN Red List of Threatened Species respectively showed the highest frequency of occurrence of species representing 44.4% of all sightings. These results show the value of this MPA in protecting critical habitats for elasmobranchs while suggesting its limitation in protecting adult life stages and other elasmobranchs with wider ranging movements that are likely threatened by fishing in waters adjacent to the MPA. This study provides critical information to support the development of a Sir Bu Nair management plan and highlights further research needs around the island. Finally, it reinforces the need of additional management measures to protect and promote the recovery of elasmobranchs in the United Arab Emirates and broader Arabian Gulf.