Common Species Research Articles

Changes in the prevalence of fungal species causing post‐harvest diseases of carrot in Finland

AbstractPost‐harvest diseases cause significant economic losses in the carrot production chain. In this study, storage losses and fungal pathogens causing them were analysed in the carrot yield from 52 different field plots in four areas in Finland in 3 years (2016–2018). Over 30,000 carrots were sampled and analysed at three time points during cold storage at 0–1°C. In March, after 5–6 months' storage, the average loss due to diseases was 20%–21% every year. Decay of the root tip was the most common disease symptom, followed by pits on the side and black rot in the crown, detected in 69.2%, 15.0% and 9.0% of the symptomatic samples, respectively. Both intensive carrot cultivation practice and early timing of harvest increased storage losses. Pathogens in 3057 symptomatic carrot tissue samples were isolated by culturing, and fungal species were identified. The most common fungal species detected were Mycocentrospora acerina, Botrytis cinerea and Fusarium spp., especially F. avenaceum. However, the frequency of different pathogens varied between the different years and time points during storage. Species‐specific PCR tests revealed that M. acerina and F. avenaceum were present in many early time‐point samples where they could not yet be detected by the culturing method. In Finland, this study on carrot post‐harvest diseases is the first large‐scale survey in which the fungal pathogens were isolated and identified by laboratory tests. In comparison with the previous studies, Fusarium spp. were detected more frequently in this study, while grey mould and Sclerotinia rot were less frequent.

Field testing of recombinant subunit vaccines against Teladorsagia circumcincta in lambing ewes demonstrates a lack of efficacy in the face of a multi-species parasite challenge

IntroductionWe previously demonstrated efficacy of an 8-antigen recombinant subunit vaccine against a single species homologous Teladorsagia circumcincta challenge in lambs and in lambing ewes in pen trials. We subsequently demonstrated efficacy of a simplified, 2-antigen, version of this vaccine in lambs in pen trials. Here, we test both vaccines in lambing ewes in a field setting.MethodsIn the work presented here, 12 adjacent plots were seeded with a mixed infection of several common species of parasitic nematodes of sheep in temperate regions, including T. circumcincta. Ewes (n = 144), in groups of 12, grazed for 2 years on these plots and, in the first year, six of these groups of ewes were vaccinated with a 2-antigen prototype vaccine against T. circumcincta prior to mating and then again prior to lambing. In the following year these ewes were immunised again, this time with the 8-antigen prototype vaccine against T. circumcincta prior to mating and then prior to lambing. Throughout both seasons antigen-specific serum antibody levels in ewes and faecal worm egg counts (FEC) in ewes and their lambs were monitored, along with nematode species diversity at lambing.ResultsImmunised ewes produced elevated serum antibody levels to each of the vaccine antigens following immunisation but their FEC levels were not statistically significantly impacted by vaccination with either vaccine. FEC levels were also not impacted in lambs co-grazing the pastures with these immunised ewes. Nematode species diversity was not significantly impacted by vaccination in either year.DiscussionThe immunosuppressive effects of co-infecting gastrointestinal nematodes, the absence of vaccine cross-protection against co-infecting species and the influence of the periparturient relaxation in immunity probably all contributed to the inability of either vaccine to protect against T. circumcincta infection in field trials in the work presented here.

Insect root feeders incur negative density-dependent damage across plant species in an alpine meadow.

Although herbivores are well known to incur positive density-dependent damage and mortality, thereby likely shaping plant community assembly, the response of belowground root feeders to changes in plant density has seldom been addressed. Locally rare plant species (with lower plant biomass per area) are often smaller with shallower roots than common species (with higher plant biomass per area) in competition-intensive grasslands. Likewise, root feeders are often distributed in the upper soil layers. We hypothesized, therefore, that root feeders would incur negative density (biomass)-dependent damage across plant species. To test this hypothesis, we investigated the diversity and abundance of plant and root feeder species in an alpine meadow and determined the diet of the root feeders using metabarcoding. Across all species, root feeder load decreased with increasing aboveground plant biomass, root biomass, and total plant biomass per area, indicating a negative density dependence of damage across plant species. Aboveground plant biomass per area increased with increasing individual plant biomass and root depth per area across species, suggesting that rare plant species were smaller in size and had shallower root systems compared to common plant species. Both root biomass per area and root feeder biomass per area decreased with soil depth, but the root feeder biomass decreased disproportionately faster compared to root biomass with increasing root depth. Root feeder load decreased with increasing root depth but was not correlated with the feeding preference of root feeder species. Moreover, the prediction derived from a random process incorporating vertical distributions of root biomass and root feeder biomass significantly accounted for interspecific variation in root feeder load. In conclusion, the data indicate that root feeders incur negative density-dependent damage across plant species. On this basis, we suggest that manipulative experiments should be conducted to determine the effect of the negative density-dependent damage on plant community structure and that different types of plant-animal interactions should be concurrently examined to fully understand the effect of plant density on overall herbivore damage across plant species.

Development and characterization of nuclear microsatellite markers for the African walnut Coula edulis Baill (Coulaceae).

Coula edulis Baill (Coulaceae) is a common tree species in the Guineo-Congolian forests producing an edible fruit known as African walnut, which is an important food and income resource for rural populations. However, the species suffers from a deficit of natural regeneration. We developed here nuclear microsatellite markers for C. edulis to be able to study the genetic structure of its natural populations and gene flow. A genomic library was obtained using the Illumina platform, and 21 polymorphic microsatellite loci were developed. The polymorphic microsatellites displayed eight to 22 alleles per locus (average: 14.2), with a mean expected heterozygosity ranging from 0.33 to 0.72 in five populations from Central and West Africa. The high polymorphism of the nuclear microsatellite markers developed makes them useful to investigate gene flow and the organization of genetic diversity in C. edulis, and to assess whether particular genetic resources require conservation efforts.

Protecting commonplace biodiversity under international conservation law

A contemporary appraisal of the extent to which international conservation law provides for the protection of commonplace biodiversity. It is argued that in light of the current extinction crisis, biodiversity would be better served if the law focused more on protecting common species rather than just the rare and endangered. Particular attention is paid to the rationales behind conservation regulation and how different understandings of the value have influenced the law’s development. Key conservation mechanisms, namely area-based management, species-focused mechanisms and the ecosystem approach, are analysed in relation to how they protect commonplace biodiversity, before a case study on the legal protection of plants is presented. What is suggested is that international conservation law has failed to keep pace with key developments in conservation science, resulting in a regulatory system that appears structurally incapable of halting biodiversity loss. Reforming the law so that it provides greater protection to commonplace biodiversity would be an important first step in responding to this.

Revisiting a pollen-transmitted ilarvirus previously associated with angular mosaic of grapevine

We report the characterization of a novel tri-segmented RNA virus infecting Mercurialis annua, a common crop weed and model species in plant science. The virus, named "Mercurialis latent virus" (MeLaV) was first identified in a mixed infection with the recently described Mercurialis orthotospovirus 1 (MerV1) on symptomatic plants grown in glasshouses in Lausanne (Switzerland). Both viruses were found to be transmitted by Thrips tabaci, which presumably help the inoculation of infected pollen in the case of MeLaV. Complete genome sequencing of the latter revealed a typical ilarviral architecture and close phylogenetic relationship with members of the Ilarvirus subgroup 1. Surprisingly, a short portion of MeLaV replicase was found to be identical to the partial sequence of grapevine angular mosaic virus (GAMV) reported in Greece in the early 1990s. However, we have compiled data that challenge the involvement of GAMV in angular mosaic of grapevine, and we propose alternative causal agents for this disorder. In parallel, three highly-conserved MeLaV isolates were identified in symptomatic leaf samples in The Netherlands, including a herbarium sample collected in 1991. The virus was also traced in diverse RNA sequencing datasets from 2013 to 2020, corresponding to transcriptomic analyses of M. annua and other plant species from five European countries, as well as metaviromics analyses of bees in Belgium. Additional hosts are thus expected for MeLaV, yet we argue that infected pollen grains have likely contaminated several sequencing datasets and may have caused the initial characterization of MeLaV as GAMV.

Effect of coral‐giant clam artificial reef on coral recruitment: insights for restoration and conservation efforts

Coral recruitment is a vital process for the maintenance and recovery of coral reefs, particularly due to their decline from global change. While it is well established that larval settlement cues significantly influence coral recruitment, the investigation of recruitment success associated with the surrounding community mainly focuses on algae. To investigate other factors controlling this process, we examined the impact of benthic invertebrate assemblages on coral recruitment using artificial reefs. Three types of artificial reefs (mono‐, bi‐, and tri‐species) with different assemblages of three common species, Pocillopora acuta, Acropora cytherea, and Tridacna maxima, were studied over 8 months. This study revealed that benthic assemblages play a significant role in coral recruitment and survival. High biodiversity was found to enhance coral recruitment and inhibit potential negative cues from A. cytherea. Our findings underscore the importance of preserving high biodiversity using not only hard coral but a wide range of phyla, including bivalves, in coral restoration efforts. Maintaining sustainable populations is an important goal to reach in the face of the multiple threats that impact coral reefs.

Effect of Cipangopaludina chinensis and diversity of plant species with different life forms on greenhouse gas emissions from constructed wetlands

Greenhouse gas emissions (GHG) from Constructed wetlands (CWs) for treating wastewater have been largely focused on. Previous studies have demonstrated that plant species diversity significantly affects GHG. However, the effect of the diversity of plant species with different life forms and benthic organisms on GHGs from CWs remains unclear. In this study, we selected three common aquatic plant species with different life forms (submerged, free-floating, emergent) for diversity configuration (one, two, three species richness and all seven combinations; six replicates), with C. chinensis added to half the replicates. Results showed that: (1) in systems without C. chinensis, high plant species richness significantly increased CO2 emissions and GWPCH4+N2O+CO2, as well as CO2 emissions per unit N removal and GWPCH4+N2O+CO2 per unit N removal, the presence of Acorus calamus increased CO2 emissions by 77 % and GWPCH4+N2O+CO2 by 72 %, respectively, while the presence of Pistia stratiotes significantly reduced N2O emissions by 41 %; (2) in systems with C. chinensis, the presence of P. stratiotes significantly reduced N2O emissions by 73% and GWPnon-CO2 by 68 %, respectively; (3) plant species identify did not affect GWPCH4+N2O+CO2 per unit N removal and GWPnon-CO2 per unit N removal in systems with or without C. chinensis. In summary, adding C. chinensis affected the effect of plant species identity on GHGs from CWs. Thus, we suggested that establishing communities with low plant species richness and proper species (such as P. stratiotes) could improve pollutant removal rate (TIN) and reduce GHGs in CWs.

Effects of flow speed and prey density on the rate and efficiency of prey capture in zooplanktivorous coral-reef fishes

Holling’s classical functional response model describes the mechanistic foundations of the relationships between predation rate and prey density. As such, the model is pertinent to predators that actively search for prey, but not to stationary predators in which additional factors, such as flow speed, determine the rates of prey encounter. The main objective of this study was to measure the rates and corresponding efficiencies of zooplanktivory among different common species of coral-reef fishes under a wide range of prey densities and current speeds. All our experiments were carried out in a flume with different combinations of flow speeds (3-28.5 cm/s) and prey densities (210 - 1050 prey m-3). Nauplii of Artemia salina were used as prey. Despite major differences in the taxonomic origin of the studied species, their morphologies, and the types of shelters they use, the foraging performances of the fish, their predation rates, and the way those rates were affected by prey density and flow speed were surprisingly similar. Under a fixed prey density, capture rates did not change much as function of flow speed. Under conditions of equal prey flux, predation rates were always higher under conditions of high density and weaker flow than under lower density and faster flow. A sharp decline in capture efficiency with increasing flow speed was explained by a corresponding narrowing of the fish’s body orientation relative to the flow. In other words, with increasing flow speed, the fish gradually became more-narrowly oriented head-on onto the flow, exhibiting a decrease in the frequency of body turns (“maneuverability”). These trends, especially the reduced maneuverability under strong currents, can explain our findings that predation rates did not increase when the flow, hence prey flux, increased. Inter-specific differences in predation rates and efficiencies, however small, agree well with observed differences in the type of habitats the different species occupy.

Identification of breadfruit (Artocarpus altilis) and South American crops introduced during early settlement of Rapa Nui (Easter Island), as revealed through starch analysis.

Starch residue analysis was carried out on stone tools recovered from the bottom layer of the Anakena site on Rapa Nui (Easter Island). These deposits have been dated to AD 1000-1300 AD and so far, represent the earliest evidence of human settlement on this island. Twenty obsidian tools were analyzed. Analysis of 46 starch grains recovered from 20 obsidian tools from the earliest dated level of the Anakena site on Rapa Nui provides direct evidence for translocation of traditional crop plants at initial stages of the colonization of this island. The analysis of starch grains was based mainly on statistical methods for species identification but was complemented by visual inspection in some cases. Our results identify taxons previously unknown to have been cultivated on the island, such as breadfruit (Artocarpus altilis), Zingiber officinale (ginger), and starch grains of the Spondias dulcis and Inocarpus fagifer tropical trees. Additionally, starch grains of Colocasia esculenta (taro) and Dioscorea sp. (yam), both common species in Pacific agriculture, were identified. Furthermore, the presence of four American taxa Ipomoea batatas (sweet potato), Canna sp. (achira), Manihot esculenta (manioc), and Xanthosoma sp., was detected. The occurrence of Canna sp., M. esculenta, and Xanthosoma sp. starch grains suggests the translocation of previously not described South American cultivars into the Pacific. The detection of I. batatas from this site in Rapa Nui constitutes the earliest record of this cultigen in the Pacific. Our study provides direct evidence for translocation of a set of traditional Polynesian and South American crop plants at the initial stages of colonization in Rapa Nui.

Community Tree Nurseries in the UK: Promise, Potential and Pitfalls

Forest restoration and tree-planting projects initiated as a response to climate change and biodiversity loss are increasingly important around the globe. Small-scale and community-based tree nurseries have been promoted as a potential route to meeting some local or regional supply-side bottlenecks. A study in the UK used a mixed methods approach to assess the potential contribution of community tree nurseries (CTNs) to tree material supply. Semi-structured interviews (SSIs) were undertaken with 16 CTNs across the UK to generate a sector-wide characterisation of CTNs. A UK-wide online survey assessed the total number of CTNs, production methods and volumes, biosecurity practices and benefits of community involvement. Another 13 CTNs receiving support to establish and extend their operations took part in SSIs assessing their development. The results indicate that there are four broad types of CTN (Organisation- and project-based, Community-based, Enterprise and Network CTNs). A significant number of CTNs in Britain are new and establishing. The sustainability of CTNs relies in large part on grant support rather than income from tree sales. Production is almost exclusively native broadleaves and local provenances. There are policy implications concerning: i. the suitability of species being produced to future climatic and market conditions and ii. the tension around financial viability, grant dependence and CTN sustainability for those CTNs focused on social and environmental benefits rather than income generation. Identifying gaps in the provision of trees by commercial nurseries, e.g., uncommon or recalcitrant species, could be a feasible financial strategy. It is likely that financial support and skills development are likely to be required as social innovation in the community-supported tree nursery sector establishes and develops. Judging the success and impact of some types of CTNs in terms of production and finance measures may be unfair, as other social and environmental benefits may be as important and valuable. It is clear that more evaluative research is needed to quantify and better understand these kinds of outcomes and the added value they accrue.

Warming affects leaf light use efficiency and functional traits in alpine plants: evidence from a 4-year in-situ field experiment.

Light use efficiency (LUE) is a crucial determinant of plant productivity, while leaf functional traits directly affect ecosystem functions. However, it remains unclear how climate warming affects LUE and leaf functional traits of dominant species in alpine meadows. We conducted a 4-year in-situ field warming experiment to investigate the eco-physiological characteristics for a dominant species (Elymus nutans) and a common species (Potentilla anserina) on the Tibetan Plateau. The leaf traits, photosynthesis and fluorescence characteristics were measured, along with the soil physical-chemical properties associated with the two species. Experimental warming increased the leaf LUE, maximum photochemical efficiency, non-photochemical quenching, relative water content and specific leaf area for both species. However, there was a decrease in leaf and soil element content. Different species exhibit varying adaptability to warming. Increasing temperature significantly increased the photosynthetic rate, stomatal conductance, transpiration rate, total water content, and specific leaf volume of E. nutans; however, all these traits exhibited an opposite trend in P. anserina. Warming has a direct negative impact on leaf LUE and an indirectly enhances LUE through its effects on leaf traits. The impact of warming on plant photosynthetic capacity is primarily mediated by soil nutrients and leaf traits. These results indicate that the two different species employ distinct adaptive strategies in response to climate change, which are related to their species-specific variations. Such changes can confer an adaptive advantage for plant to cope with environmental change and potentially lead to alterations to ecosystem structure and functioning.

Epidemiological investigation of coccidiosis and associated risk factors in broiler chickens immunized with live anticoccidial vaccines in China.

Coccidiosis is a costly intestinal disease of chickens caused by Eimeria species. This infection is associated with high mortality, reduced feed efficiency, and slowed body weight gain. The diagnosis and control of coccidiosis becomes challenging due to the fact that chickens can be infected by seven different Eimeria species and often occur mixed-species co-infections. Grasping the epidemiology of Eimeria species is crucial to estimate the efficiency of poultry management. This study aimed to explore the distribution of Eimeria species in broiler chickens in China after administering live anticoccidial vaccines. A total of 634 samples were obtained, and the survey results showed that the prevalence of Eimeria was 86.12% (546/634), and the most common species were E. acervulina (65.62%), E. necatrix (50.95%), E. mitis (50.79%), E. tenella (48.42%), and E. praecox (41.80%). Most samples indicated mixed-species infections (an average of 3.29 species per positive sample). Notably, 63.98% of samples contain 3 to 5 Eimeria species within a single fecal sample. The most prevalent combinations were E. acervulina-E. tenella (38.96%) and E. acervulina-E. necatrix (37.22%). Statistical analysis showed that flocks vaccinated with trivalent vaccines were significantly positive for E. necatrix in grower chickens (OR = 3.30, p < 0.05) compared with starter chickens, and tetravalent vaccinated flocks showed that starter chickens demonstrated a higher susceptibility to E. tenella-E. brunetti (OR = 2.03, p < 0.05) and E. acervulina-E. maxima (OR = 2.05, p < 0.05) compared with adult chickens. Geographically, in the case of tetravalent vaccine-immunized flocks, a substantial positive association was observed between E. necatrix infection rates and flocks from eastern (OR = 3.88, p < 0.001), central (OR = 2.65, p = 0.001), and southern China (OR = 3.17, p < 0.001) compared with southwestern China. This study also found a positive association between E. necatrix (OR = 1.64, p < 0.05), E. acervulina (OR = 1.59, p < 0.05), and E. praecox (OR = 1.81, p < 0.05) infection and coccidiosis occurrence compared with non-infected flocks in tetravalent vaccinated flocks. This molecular epidemiological investigation showed a high prevalence of Eimeria species in the field. The emergent species, E. brunetti and E. praecox, might be incorporated into the widely-used live vaccines in the future. These insights could be useful in refining coccidiosis control strategies in the poultry industry.

A systematic approach for authentication of medicinal Patrinia species using an integration of morphological, chemical and molecular methods

Four common Patrinia species, including P. heterophylla, P. monandra, P. scabiosifolia and P. villosa, have been documented as herbal medicines with various clinical applications, such as anti-cancer, anti-diarrhea and sedative. However, the authentication of medicinal Patrinia species poses a problem, particularly with the processed herbal materials. This study aimed to systematically authenticate the four medicinal Patrinia species in the market using morphological and chemical characterization, as well as DNA markers. We found the species identity authenticated by traditional morphologies were in good agreement with both chemical and molecular results. The four species showed species-specific patterns in chromatographic profiles with distinct chemical markers. We also revealed the power of complete chloroplast genomes in species authentication. The sequences of targeted loci, namely atpB, petA, rpl2-rpl23 and psaI-ycf4, contained informative nucleotides for the species differentiation. Our results also facilitate authentication of medicinal Patrinia species using new DNA barcoding markers. To the best of our knowledge, this is the first report on the application of morphology, chemical fingerprinting, complete chloroplast genomes and species-specific Insertion-Deletions (InDels) in differentiating Patrinia species. This study reported on the power of a systematic, multidisciplinary approach in authenticating medicinal Patrinia species.

New data on the clupeoids of lakes Mai-Ndombe and Tumba, western Democratic Republic of the Congo, using an integrated approach combining morphology and barcoding

Morphological and molecular comparisons of clupeoid fishes in lakes Tumba and Mai-Ndombe in the Congo Basin revealed that a large-sized form of a common species in Lake Mai-Ndombe had not been distinguished from the small-sized endemic Mai-Ndombe dwarf sprat Nannothrissa stewarti Poll & Roberts, 1976 in ecological studies. The large-sized form differs from the Mai-Ndombe dwarf sprat in several morphological characters and resembles the smalltoothed pellonula Pellonula leonensis Boulenger, 1916, but in barcoding analysis appears more closely related to the bluntnosed sawtooth pellonuline Potamothrissa obtusirostris (Boulenger, 1909). This large-sized form is probably a species new to science but will remain undescribed for now, and is here referred to as Pellonulinae sp. BIG. A slender clupeoid, also from Lake Mai-Ndombe, has recently been referred to as the Lake Tumba dwarf sprat Nannothrissa parva (Regan, 1917), which would be the first record of this species from that lake. Specimens of a slender clupeoid collected from Lake Mai-Ndombe for this study were identified as the losera fangtooth pellonuline Odaxothrissa losera Boulenger, 1899. This is the first confirmed occurrence of this species in Lake Mai-Ndombe, whereas the presence of N. parva could not be confirmed. The phylogenetic analysis strongly supports the genus Nannothrissa as currently delimited, here barcoded for the first time, but also confirms the previously reported mismatch between morphological classification and molecular data in this group. We further note that the Mai-Ndombe dwarf sprat attains a larger size than the maximum size noted in the original description in 1976, and it is suggested that an intense beach-seine fishery that utilises mosquito nets might have led to a population decline followed by decreased intraspecific competition, enhancing individual growth. For the same reason, Pellonulinae sp. BIG might have been less common previously and so remained undetected until now.

Drought and vegetation restoration lead to shifts in soil microbial diversity and co-occurrence networks in California coastal prairie

Abstract Background and aims Both drought and vegetation restoration can have dramatic effects on plant community composition, but how they influence soil microbial community diversity, structure, and co-occurrence networks remain less well known. Methods To better understand the regulatory mechanisms of drought and vegetation restoration on soil microorganisms, we planted 12 native species in precipitation manipulation experimental plots in an invaded coastal grassland in California, USA. We measured soil bacterial and fungal community composition by amplicon sequencing, and quantified plant species richness and coverage in the third experimental year. Results Our results showed that drought significantly altered soil bacterial diversity and composition; however, neither drought nor vegetation restoration had significant effects on fungal diversity and composition. The control plots had the most cooperative interactions (greatest number of correlations) among bacterial and/or fungal species, while drought plots yielded the most complex co-occurrence network with the highest modularity and clustering coefficient. Structural equation modeling revealed that plant species richness, net gains, and soil moisture played dominant roles in shaping bacterial community structure. Drought and bacterial community structure directly affected fungal community structure. Plant dominant species cover, common species cover, and bacterial diversity were the key drivers in regulating the microbial co-occurrence network complex. Conclusion We conclude that soil bacterial and fungal communities differ in their responses to abiotic and biotic environmental changes, which may weaken the interspecies interactions among soil microorganisms.

Use of wildlife-friendly structures in residential gardens by animal wildlife: evidence from citizen scientists in a global biodiversity hotspot

AbstractPrivate gardens comprise a large component of greenspace in cities and can offer substantial conservation opportunities. There has been strong advocacy from researchers, policymakers, and conservation practitioners to engage householders in wildlife-friendly gardening practices to increase the quantity, quality and connection of habitat resources for urban wildlife. Despite this call to action, there remains limited knowledge on the use and benefit of some wildlife-friendly structures within gardens, such as artificial refuges and water sources. In collaboration with 131 citizen scientists in southwestern Australia, we examined the use of seven wildlife-friendly structure types by four vertebrate taxa groups. Following 2841 wildlife surveys undertaken between 31 July 2022 and 22 February 2023, we found that all structures were used primarily by target taxa, water sources were often used by relatively common species, certain structures such as possum shelters were used by rare and threatened species (e.g. western ringtail possum), and that there was evidence of animals making use of the wildlife-friendly structures for reproduction (e.g. bird eggs in nest boxes and tadpoles in water sources). Water sources were used more frequently and by a greater diversity of wildlife than artificial refuges. In particular, bird baths were used by the highest number of species (mainly birds) while ponds were used by the greatest variety of taxa (birds, reptiles, frogs, mammals). Our findings provide evidence-based support for the advocacy of wildlife-friendly gardening practices and further highlight the role of residential gardens for biodiversity conservation.

Obtaining accurate population estimates with reduced workload and lower fish mortality in multi-mesh gillnet sampling of a large pre-alpine lake.

The EU Water Framework Directive requires monitoring of the ecological status of lakes, with fish as a relevant class of biotic quality indicator, but monitoring fish populations in large lakes is demanding. This study evaluated use in Lake Constance of a novel multi-mesh gillnet modified to reduce catch numbers. In direct comparison with conventional European Committee for Standardization (CEN) nets we achieved 48% reduction in fish mortality with 38% less labour for tasks directly influenced by fish catch numbers, while maintaining comparable species composition and catch per unit effort. Comparison of mesh sizes indicated no significant reduction in species detection in area-reduced panels of the small mesh sizes, while total observed species richness was greater when using the modified nets. Differences in benthic species communities among depth strata were common, while those of pelagic zones were more homogeneous and did not differ significantly with depth. Catches of different net types from the same depth stratum did not exhibit significant differences. The dominance structure of the most common species, relevant to lake assessment, was similar in catches of both net types, suggesting overall superiority of the modified nets in Lake Constance. Sampling conducted according to standard European CEN protocol, while deploying 60% fewer nets, yielded sufficiently precise abundance estimates for monitoring shallow areas of the benthic zone. A 50% difference in the abundance of dominant species was detected among sampling events with a certainty of 95%. The sample did not provide comparable accuracy in deep benthic strata or the pelagic zone, but was adequate to record complete inventories of species present. Based on this trial data, a new stratified sampling design is proposed for monitoring large lake fish communities for ecological assessment. Depth-dependent fish communities were used to calculate the required number of nets, which resulted in a 69% reduction for the entire lake compared to the CEN calculation method. Using the modified nets increases the feasibility of performing WFD surveys, by reducing effort and cost, while the simultaneous halving of fish mortality minimises the negative impact of fish surveys.

Enhancing Multi-species Liver Microsomal Stability Prediction through Artificial Intelligence.

Liver microsomal stability, a crucial aspect of metabolic stability, significantly impacts practical drug discovery. However, current models for predicting liver microsomal stability are based on limited molecular information from a single species. To address this limitation, we constructed the largest public database of compounds from three common species: human, rat, and mouse. Subsequently, we developed a series of classification models using both traditional descriptor-based and classic graph-based machine learning (ML) algorithms. Remarkably, the best-performing models for the three species achieved Matthews correlation coefficients (MCCs) of 0.616, 0.603, and 0.574, respectively, on the test set. Furthermore, through the construction of consensus models based on these individual models, we have demonstrated their superior predictive performance in comparison with the existing models of the same type. To explore the similarities and differences in the properties of liver microsomal stability among multispecies molecules, we conducted preliminary interpretative explorations using the Shapley additive explanations (SHAP) and atom heatmap approaches for the models and misclassified molecules. Additionally, we further investigated representative structural modifications and substructures that decrease the liver microsomal stability in different species using the matched molecule pair analysis (MMPA) method and substructure extraction techniques. The established prediction models, along with insightful interpretation information regarding liver microsomal stability, will significantly contribute to enhancing the efficiency of exploring practical drugs for development.

Comparison of the Differences in Tolerance to Drought Stress across Five Clematis Species Based on Seed Germination and Seedling Growth

Plants of the Clematis genus are attractive ornamental plants due to their various flower colors and patterns, and they play an important role as ground cover plants in landscaping. However, the application of Clematis plants in landscaping in arid and semi-arid areas is limited. This study used five common wild Clematis species in Gansu Province as experimental materials, including Clematistangutica, Clematis glauca, Clematis intricata, Clematis nannophylla, and Clematis fruticosa. By simulating different intensities of drought stress with polyethylene glycol (PEG), the germination behavior of seeds and the physiological and biochemical responses of seedlings of these five species to drought stress were observed. The results showed that 15% PEG stress significantly inhibited the seed germination of the five species, which was also the drought threshold for seed germination of C. fruticosa. C. tangutica exhibited the strongest tolerance to drought stress in seed germination. Seedlings of the five Clematis plants showed different levels of tolerance to drought stress, mainly demonstrating higher tolerance to 10% and 20% concentrations of PEG stress, while a 30% concentration of PEG stress caused varying degrees of damage to the seedlings of the five Clematis species. PCA analysis indicated that seedlings of C. intricata and C. glauca had higher scores under drought stress. These findings can provide a theoretical basis for the selection of urban landscaping plant species in arid and semi-arid regions of northwest China.