Recently, the use of nanofluids has gained importance in studies aimed at increasing reactor efficiency while also addressing safety concerns in nuclear technology. Various studies have investigated the effects of adding nanoparticles of different types and proportions to the coolant water on the thermal and neutronic characteristics of power reactors using conventional UO2 fuels. Given the abundance of thorium compared to uranium, research on thorium-based fuels has become increasingly significant. In this study, the criticality and isotope changes in a VVER-1000 reactor loaded with 5% ThO2 and 95% UO2 by mass as fuel, and 0.1% by volume of Al2O3, CuO, and TiO2 nanoparticles as the coolant, were investigated. Neutronic analysis was performed using the MCNP5 and MONTEBURNS2.0 codes. The analysis results indicated that the operational lifespan of the reactor with only water coolant and thorium-based fuel was shortened due to the presence of nanoparticles. Furthermore, it was observed that while there was no significant change in the amount of fissile 235U and fertile 238U isotopes, the consumption of fertile 232Th isotope in the reactor increased with the insertion of nanoparticles into the coolant.