Long-term effects of integrated application of organics and chemical fertilizers on transformation of copper (Cu) into various chemical pools and their availability under maize–wheat cropping system were investigated in the ongoing long-term fertilizer experiment initiated in 1972 at the research farm of Chaudhary Sarwan Kumar Himachal Pradesh Agricultural University on an acidic soil in the Western Himalayas of India. The continuous use of chemical fertilizers alone for 36 years brought about marked depletion in all forms of copper except organically bound Cu (Cu-III) compared to buffer plots. Integrated use of organics and chemical fertilizers gave higher content of Cu forms over chemically treated plots except Cu occluded by free oxides (Cu-IV). Residual Cu was the most dominant form of copper contributing about 62% of the total Cu. Organically bound Cu (Cu-III) was the most important fraction of copper contributing toward DTPA (diethylene triamine pentaacetic acid) extractable Cu. Content of DTPA-extractable Cu increased over control when chemical fertilizers were applied in conjunction with different organics, whereas DTPA-Cu content declined over control with application of chemical fertilizers alone for the last 36 years.