This work concentrates on the recent ostracod community from the bottom sediments of Burullus lagoon (BuL), Egypt. It aims to identify the impacts of the environmental factors such salinity, substrate and pH on the ostracod community. Only four ostracod species are identified, Cyprideis torosa, Leptocythere castanea, Loxoconcha elliptica and Cypridopsis vidua. The results reflect the abundance of a sole tolerant species, C. torosa (79.59–100 %, with an average of 94.18 %), in all sites. Actually, this conclusion reflects the dominance of unfavorable conditions for increasing the biodiversity in the lagoon. Moreover, the associated benthic foraminiferal assemblage suffers from the rarity of species and the abundance of one tolerant species, Ammonia tepida. Therfore, there is an urgent need to understand the environmental conditions in the BuL. The measured low salinities are suitable for the survival of only brackish ostracod species. Moreover, the distribution and structure of the ostracod assemblage are mainly controlled by the type of bottom sediments. Actually, as the content of sand increases, particularly at sites near the connection to the sea, low numbers of individuals are recorded, whereas the number of living species increases in muddy substrate. Furthermore, the sites with sandy substrate display thick-walled carapaces, while the others with muddy substrate possess thin-walled carapaces. Also, the occurrence of Cypridopsis vidua is restricted only to the muddy substrate. In terms of the hydraulic conditions, the highest abundance of living species is recorded in the southern part, where the quiet conditions prevail. The lagoon water is alkaline, so pH has no observed effects on the ostracod community. Accordingly, salinity, sediment types and hydraulic conditions play the major role in controlling the abundabce, diversity and distribution of ostracods in the study area. Geographically, the identified ostracod species are broadly distributed in the brackish lagoons of the Mediterranean region.