In this study, the chloride ion (Cl−) binding rate of sulfoaluminate cement (SAC) mortars containing different mineral admixtures was investigated. This is essential to improve the durability of concrete structures in high Cl− environments, especially where they are susceptible to Cl− attack such as coastlines and marine structures. The effects of Cl− concentration, curing age, and the type and amount of mineral admixture on the Cl− binding rate of SAC mortars were analyzed. It was found that the content of water-soluble Cl− in SAC mortars decreased with the increase of curing age, while the Cl− binding ratio increased accordingly, indicating that its resistance to internal Cl− permeation increased. The addition of fly ash (FA) and ground granulated blast furnace slag (GGBS) can significantly improve the Cl− binding rate of SAC mortars, and the Cl− binding rate increases to 46.6% with 20% of FA and 38.7% with 40% of GGBS. The effects of mineral admixtures on the microstructure and phase composition of SAC mortars were further investigated by X-ray diffraction (XRD) analysis. The results showed that the addition of FA and GGBS promoted the formation of C-S-H (calcium silicate hydrate) gels and improved the resistance of SAC mortars to Cl− penetration. On the other hand, the excessive addition of silica fume (SF) decreased the Cl− binding rate, whereas a moderate amount of limestone powder (LP) improved the Cl− binding rate. The study of the Cl− binding rate of SAC mortars can help to evaluate their resistance to Cl− erosion in real projects, thus guiding the optimization of concrete formulations and the improvement of durability.