Crafting rational heterojunctions with nanostructured materials is instrumental in fostering effective interfacial charge separation and transport for optoelectronics. Layered halide perovskites (LHPs) that form heterojunctions between organic spacer molecules and inorganic metal halide layers exhibit tunable photophysics owing to their customizable band alignment. However, controlling photogenerated carrier dynamics by strategically designing layered perovskite heterojunctions remains largely unexplored. We combine a data-driven approach with time-domain density functional theory (TD-DFT) and non-adiabatic molecular dynamics (NAMD) to screen and select electronically active spacer dications (A') that introduce a type-II heterojunction in the lead iodide-based Dion-Jacobson phase LHPs. The composition-structure-electronic property correlations reveal that the number of nitrogens in aromatic heterocycles is the key factor in designing electron-accepting spacers in these perovskites. The detailed atomistic simulations validate the design strategy further by modeling (A')PbI4 perovskites, which incorporate three different screened electroactive A' spacers. The computed excited charge carrier dynamics illustrate the phonon-mediated ultrafast interfacial electron transfer from the inorganic conduction band edge to the lower-lying unoccupied orbitals of spacers, exhibiting photoluminescence quenching in these (A')PbI4 perovskites. The spatially separated electrons and holes at the type-II heterojunction interface prolong the excited charge carrier lifetime, boosting the carrier transport and exciton dynamics. Our work illustrates a robust in silico approach for designing LHPs with exciting optoelectronic properties originating from their fine-tuned heterojunctions.