Sugarcane straw is not effectively used in the industry currently. However, sugarcane straw hemicellulose hydrolyzate (HH) application as raw material for H2 and CH4 production is a promising alternative. In this work, the two-stage anaerobic digestion (TS-AD) approach led to 37.86 mLH2/L.h and 40.12 mLCH4/L.d, while the single-stage anaerobic digestion (SS-AD) generated 46.11 mLCH4/L.d. Hence, the two-stage process was energetically favorable than the single-stage by approximately 33%. Additionally, the comparison with standard medium (composed of glucose, xylose, and arabinose) applied as raw material indicated that although hydroxymethylfurfural and furfural from HH were not responsible for the decrease in H2 production, they extended the adaptive phase of methanogenic archaea during the methanogenesis. Hemicellulose hydrolysate is an attractive raw material for two-stage anaerobic digestion.