We investigate the phase winding dynamics of a harmonically trapped two-component BEC subject to inhomogeneous Rabi oscillations between two pseudospin components. While the single-particle dynamics can be explained by mapping the system to a two-component Bose-Hubbard model, nonlinearities due to the interatomic repulsion lead to new effects observed in the experiments: In the presence of a linear magnetic field gradient, a qualitatively stable moving magnetic order that is similar to antiferromagnetic order is observed after critical winding is achieved. We also demonstrate how the phase winding can be used to generate copious dark-bright solitons in a two-component BEC, opening the door for new experimental studies of these nonlinear features.