Soil Organic Matter Turnover Research Articles

Dynamics of fungal and bacterial groups and their carbon sources during the growing season of maize in a long-term experiment

The relative contribution of different microbial groups to soil organic matter (SOM) turnover and utilisation of rhizodeposits during a cropping season has remained largely unknown. We used a long-term field experiment (started in 1956), in which C3 crops were replaced with C4 silage maize in 2000, to investigate dynamics of fungi and bacterial groups and their utilisation of ‘young-C4’ and ‘old-C3’ SOM-derived resource every second week during the cropping season (June–Oct). Treatments include bare fallow, unfertilised, fertilised with mineral N and fertilised with farmyard manure (FYM) addition. Extracted soil phospholipid fatty acids (PLFAs) were pooled into Gram-positive, Gram-negative bacteria and fungi (18:2ω6,9) groups and their δ13C values determined. Total PLFAs amount correlated to the SOM contents (highest in FYM) and increased over the cropping season in N-fertilised and FYM treatments. As a result of a peak in plant growth during a period with frequent rain events in August, δ13C of total PLFAs significantly increased from − 23.8 to − 21.6‰ and − 26.1 to − 24.7‰, in N-fertilised and FYM addition, respectively. This clearly indicated a shift in microbial utilisation from old to young SOM sources, which was linked to increased soil moisture contents and fungal biomass. The abundance of Gram-positive increased and that of Gram-negative bacteria decreased until August and vice versa thereafter. The mean δ13C values of individual microbial groups were highest in fungi (corresponding to their seasonal biomass variation) followed by Gram-positive and Gram-negative bacteria. The results clearly demonstrated that irrespective of fertilisation type, fungi were the main players in seasonal SOM dynamics and were strongly influenced by soil moisture and phenological stage of the maize (i.e. rhizodeposition). Disentangling these microbial controls on C resources utilisation will be crucial for understanding C cycling during a cropping season or on an ecosystem scale.

DRIFTS band areas as measured pool size proxy to reduce parameter uncertainty in soil organic matter models

Abstract. Soil organic matter (SOM) turnover models predict changes in SOM due to management and environmental factors. Their initialization remains challenging as partitioning of SOM into different hypothetical pools is intrinsically linked to model assumptions. Diffuse reflectance mid-infrared Fourier transform spectroscopy (DRIFTS) provides information on SOM quality and could yield a measurable pool-partitioning proxy for SOM. This study tested DRIFTS-derived SOM pool partitioning using the Daisy model. The DRIFTS stability index (DSI) of bulk soil samples was defined as the ratio of the area below the aliphatic absorption band (2930 cm−1) to the area below the aromatic–carboxylate absorption band (1620 cm−1). For pool partitioning, the DSI (2930 cm−1 ∕ 1620 cm−1) was set equal to the ratio of fast-cycling ∕ slow-cycling SOM. Performance was tested by simulating long-term bare fallow plots from the Bad Lauchstädt extreme farmyard manure experiment in Germany (Chernozem, 25 years), the Ultuna continuous soil organic matter field experiment in Sweden (Cambisol, 50 years), and 7 year duration bare fallow plots from the Kraichgau and Swabian Jura regions in southwest Germany (Luvisols). All experiments were at sites that were agricultural fields for centuries before fallow establishment, so classical theory would suggest that a steady state can be assumed for initializing SOM pools. Hence, steady-state and DSI initializations were compared, using two published parameter sets that differed in turnover rates and humification efficiency. Initialization using the DSI significantly reduced Daisy model error for total soil organic carbon and microbial carbon in cases where assuming a steady state had poor model performance. This was irrespective of the parameter set, but faster turnover performed better for all sites except for Bad Lauchstädt. These results suggest that soils, although under long-term agricultural use, were not necessarily at a steady state. In a next step, Bayesian-calibration-inferred best-fitting turnover rates for Daisy using the DSI were evaluated for each individual site or for all sites combined. Two approaches significantly reduced parameter uncertainty and equifinality in Bayesian calibrations: (1) adding physicochemical meaning with the DSI (for humification efficiency and slow SOM turnover) and (2) combining all sites (for all parameters). Individual-site-derived turnover rates were strongly site specific. The Bayesian calibration combining all sites suggested a potential for rapid SOM loss with 95 % credibility intervals for the slow SOM pools' half-life being 278 to 1095 years (highest probability density at 426 years). The credibility intervals of this study were consistent with several recently published Bayesian calibrations of similar two-pool SOM models, i.e., with turnover rates being faster than earlier model calibrations suggested; hence they likely underestimated potential SOM losses.

Lipids source and degradation as revealed by molecular biomarkers in soils after acid-pretreatment: A case of a plantain soil under long-term cultivation

The extractable lipids are important components in soil organic matter (SOM) which were used to trace the sources and degradation of SOM. The protection of lipids by soil mineral have been suggested through organic solvents. But, the extraction efficiency of some lipid compounds was low. This study applied a mild acid treatment to firstly remove most of the reactive mineral particles, and without altering SOM chemical structures in 10% HF/1M HCl (1:4 w: v). Based on the obtained lipid biomarker information, we observed that the lipid extraction efficiency significantly increased by organic solvents on after removal of active minerals. The acid treatment increased the scientific to quantitative the amount of lipids. The minerals showed significant differences in the selective protection to different components of lipids. In this study, the amount range of protected n-alkanoic acids is 73~85%, n-alkanol 41~62% and n-alkanes 26~46%. After the vegetation was replaced, the increased alkenoate and alkane in soil input by the plant tissues of plantain directly, and the alkanols probably input by the hydrolysis of wax esters. Under the interference of man-made tillage activities, the C content in 0-20 cm decreased, suggesting that cultivated activities may enhance SOM degradation and accelerate SOM turnover. Understanding SOM behaviour in this area will provide important information for soil management and to evaluate carbon cycling in human-affected ecological systems.

Spatial Control of Carbon Dynamics in Soil by Microbial Decomposer Communities

Trait-based models have improved the understanding and prediction of soil organic matter dynamics in terrestrial ecosystems. Microscopic observations and pore scale models are now increasingly used to quantify and elucidate the effects of soil heterogeneity on microbial processes. Combining both approaches provides a promising way to accurately capture small-scale microbial-physicochemical interactions and to predict overall system behavior. The present study aims to quantify controls on carbon (C) turnover in soil due to the small-scale distribution of microbial decomposer communities in soil. A new spatially explicit trait-based model (SpatC) has been developed that captures the combined dynamics of microbes and soil organic matter (SOM) by taking into account microbial lifehistory traits and SOM accessibility. We performed Monte-Carlo scenario simulations for sets of spatial distributions of microbes that differ in small-scale spatial heterogeneity and microbial community functional composition (oligotrophs, copiotrophs and copiotrophic cheaters). Samples of spatial distributions of microbes were generated using a spatial statistical model based on Log Gaussian Cox Processes which was originally used to analyze distributions of bacterial cells in soil thin sections. Our modelling approach revealed that the spatial distribution of soil microorganisms triggers spatiotemporal patterns of C utilization and microbial succession. Only strong spatial clustering of decomposer communities induces diffusion-limited C availability at the microhabitat scale, resulting in lower aggregated decomposition of C compounds and microbial growth. However, decomposer communities act as functionally redundant microbial guilds with only slight changes in C utilization. The combined statistical and process-based modelling approach bridges microbial biogeography at the microhabitat scale (µm) with emergent macroscopic (cm) microbial and C dynamics. Our study points out the importance of parameterizing functional trait continua of decomposer communities and highlights promising model extensions that may provide further insights into the biological controls on soil organic matter turnover.

Warming and increased precipitation indirectly affect the composition and turnover of labile-fraction soil organic matter by directly affecting vegetation and microorganisms

Global warming accompanied by precipitation changes impacts soil carbon sequestration. A three-year field manipulation experiment with warming (+2 °C above ambient temperature) and increased precipitation (+15% and +30% above ambient precipitation) was conducted in an alpine grassland to investigate the response of soil organic matter (SOM) to future climate change on the Qinghai-Tibet Plateau (QTP). Labile-fraction SOM (LF-SOM) fingerprints were characterized by pyrolysis-gas chromatography/tandem-mass spectrometry (Py-GC–MS/MS), and organic compounds in LF-SOM were used as indicators to quantify the contributions of vegetation input and microbial degradation to LF-SOM transformation. Increased precipitation promoted LF-SOM accumulation, which were mainly due to the positive effect of increased precipitation on vegetation productivity. Plant-derived compounds in LF-SOM (including lignin, long-chain alkyl compounds, polysaccharides and phenols) were more sensitive to increasing soil moisture than microbial-derived (including short-chain alkyl compounds, N compounds and chitin) and aromatic-derived compounds (including aromatics and polyaromatics). In contrast, warming alone intensified the effect of drought on the alpine grassland, which had negative effects on both vegetation and microorganisms and reduced LF-SOM. Warming plus increased precipitation not only alleviated the water loss caused by warming but also increased soil temperature, which was more favorable for the growth of microorganisms. This was reflected in the increase in microbial-derived compounds in LF-SOM with increasing soil temperature, which contributed to LF-SOM degradation. Aromatic-derived compounds, as refractory compounds in soil, showed no significant response to either warming or increased precipitation treatments. Acidobacteria (approximately 25%) and Actinobacteria (approximately 20%), as the dominant soil bacterial communities in the alpine grassland, were significantly correlated with plant-derived compounds. At the same time, there were significant correlations between Proteobacteria and microbial-derived compounds, as well as between Firmicutes and aromatic-derived compounds (relative abundance). Under future climate change, microbial activity will increase as temperature increases, which will promote LF-SOM degradation only if precipitation also increases.

Effects of land use change on turnover and storage of soil organic matter in a tropical forest

Land-use change of tropical forests causes loss of soil organic matter and plant productivity. Effects of fallow or plantation vegetation on soil organic matter storage need to be clarified to optimize land-use that maximizes soil organic matter storage and plant productivity. We compared 30-year changes in soil carbon stocks and litter decomposition under different land-uses (primary dipterocarp forest, Macaranga forest, Imperata grassland, transition of Imperata grassland to Acacia plantation, transition of Imperata grassland to oil palm plantation) in Indonesia. The Imperata grassland maximizes soil carbon stocks for up to 10 years due to considerable root litter inputs, but additional organic matter storage is limited over the following 20 years, due to high grass litter decomposability in the less acidified soil. The conversion of Imperata grassland to oil palm plantation causes greatest loss of soil organic matter, whereas Acacia plantation on Imperata grassland or the Macaranga forest maximizes soil carbon stocks due to input of recalcitrant forest litters and reduced microbial activities in the acidified soils. Farmers could adopt short-term ( 10 years) fallow under Acacia plantation on Imperata grassland or Macaranga regeneration forest to maximize soil organic matter storage. The optimum and feasible land-use strategies should be selected based on the length of fallow period and the original acidity of soil.

Constraining Carbon and Nutrient Flows in Soil With Ecological Stoichiometry

Soil organic matter (SOM) is central to soil carbon (C) storage and terrestrial nutrient cycling. New data have upended the traditional model of stabilization, which held that stable SOM was mostly made of undecomposed plant molecules. We now know that microbial by-products and dead cells comprise unexpectedly large amounts of stable SOM because they can become attached to mineral surfaces or physically protected within soil aggregates. SOM models have been built to incorporate the microbial to mineral stabilization of organic matter, but now face a new challenge of accurately capturing microbial productivity and metabolism. Explicitly representing stoichiometry, the relative nutrient requirements for growth and maintenance of organisms, could provide a way forward. Stoichiometry limits SOM formation and turnover in nature, but important nutrients like nitrogen (N), phosphorus (P), and sulfur (S) are often missing from the new generation of SOM models. In this synthesis, we seek to facilitate the addition of these nutrients to SOM models by (1) reviewing the stoichiometric bias—the tendency to favor one element over another—of four key processes in the new framework of SOM cycling and (2) applying this knowledge to build a stoichiometrically explicit budget of C, N, P, and S flow through the major SOM pools. By quantifying the role of stoichiometry in SOM cycling, we discover that constraining the C:N:P:S ratio of microorganisms and SOM to specific values reduces uncertainty in C and nutrient flow as effectively as using microbial C use efficiency (CUE) parameters. We find that the value of additional constraints on stoichiometry vs. CUE varies across ecosystems, depending on how precise the available data is for that ecosystem and which biogeochemical pathways are present. Moreover, because CUE summarizes many different processes, stoichiometric measurements of key soil pools are likely to be more robust when extrapolated from soil incubations to plot or biome scale estimates. Our results suggest that measuring SOM stoichiometry should be a priority for future empirical work and that the inclusion of new nutrients in SOM models may be an effective way to improve precision.

Plant-plant competition influences temporal dynamism of soil microbial enzyme activity

Root-derived compounds can change rates of soil organic matter decomposition (rhizosphere priming effects) through microbial production of extracellular enzymes. Such soil priming can be affected by plant identity and soil nutrient status. However, the effect of plant-plant competition on the temporal dynamics of soil organic matter turnover processes is not well understood. This study used zymography to detect the spatial and temporal pattern of cellulase and leucine aminopeptidase activity, two enzyme classes involved in soil organic matter turnover. The effect of plant-plant competition on enzyme activity was examined using barley (Hordeum vulgare) plants grown in i) isolation, ii) intra- and iii) inter-cultivar competition. The enzyme activities of leucine aminopeptidase and cellulase were measured from portions of the root system at 18, 25 and 33 days after planting, both along the root axis and in the root associated area with detectable enzyme activity. The activities of cellulase and leucine aminopeptidase were both strongly associated with plant roots, and increased over time. An increase in the area of cellulase activity around roots was delayed when plants were in competition compared to in isolation. A similar response was found for leucine aminopeptidase activity, but only when in intra-cultivar competition, and not when in inter-cultivar competition. Therefore, plant-plant competition had a differential effect on enzyme classes, which was potentially mediated through root exudate composition. This study demonstrates the influence of plant-plant competition on soil microbial activity and provides a potential mechanism by which temporal dynamism in plant resource capture can be mediated.

Control of Soil Extracellular Enzyme Activities by Clay Minerals—Perspectives on Microbial Responses

Knowledge of how interactions of clay minerals and extracellular enzymes (EEs) influence organic matter turnover in soils are still under discussion. We studied the effect of different montmorillonite contents on EE activities, using two experiments—(1) an adsorption experiment with a commercially available enzyme (α-glucosidase) and (2) an incubation experiment (10 days) where microorganisms were stimulated to produce enzymes through organic carbon (OC) addition (starch and cellulose). Soil mixtures with different montmorillonite contents were created in four levels to a sandy soil: +0% (control), +0.1%, +1%, and +10%. The potential enzyme activity (pEA) of four enzymes, α-glucosidase, β-glucosidase, cellobiohydrolase, and aminopeptidase, involved in the soil carbon and nitrogen cycle were analysed. The adsorption experiment revealed a reduction in the catalytic activity of α-glucosidase by up to 76% with increasing montmorillonite contents. However, the incubation experiment showed an inhibitory effect on pEA only directly after the stimulation of in-situ EE production by OC addition. At later incubation stages, higher pEA was found in soils with higher montmorillonite contents. This mismatch between both experiments, with a transient reduction in catalytic activity for the incubation experiments, points to the continuous production of enzymes by soil microorganisms. It is conceivable that microbial adaptation is characterized by higher investment in EEs production induced by increasing clay contents and a stabilisation of the EEs by clay minerals. Our results point to the need to better understand EE-clay mineral-OC interactions regarding potential microbial adaptations and EE stabilisation with potentially prolonged activities.

Priming effect of the addition of maize to a Japanese volcanic ash soil and its temperature sensitivity: a short-term incubation study

ABSTRACT The response of soil organic matter (SOM) to global warming is a crucial subject. However, the temperature sensitivity of SOM turnover remains largely uncertain. Changes in the mineralization of native SOM, i.e., priming effect (PE) may strongly affect the temperature sensitivity of SOM turnover in the presence of global warming. We investigated the direction and magnitude of the PE in a Japanese volcanic ash soil at different temperatures (15°C, 25°C, and 35°C) using a natural 13C tracer (C4-plant, maize leaf) in a short-term (25 days) incubation study. In addition, we evaluated the temperature sensitivity expressed as Q 10 value with and without the addition of maize to the soil and their relations to PE. We found that positive PE occurred at each temperature condition and tended to increase with decreased temperature, and these PE results were consistent with the microbial biomass at the end of the incubation period. CO2 emission from control soil (without maize) increased with increasing temperature (Q 10 = 2.6), but CO2 emission from the soil with added maize did not significantly change with increasing temperature (Q 10 = 1.0). This was caused by the suppression of CO2 emission from the soil with increasing temperature (Q 10 = 0.9). On the other hand, soil-originated CO2 emission clearly increased with increasing temperature (Q 10 = 3.4) when Q 10 values were calculated on the assumption that the temperature and substrate supply increase at the same time (from 25°C). These results suggest that not only the temperature increase but also the labile carbon supply may be important for the temperature sensitivity of Japanese volcanic ash soil.

Feedbacks between nitrogen fixation and soil organic matter increase ecosystem functions in diversified agroecosystems.

Nitrogen (N) losses from intensified agriculture are a major cause of global change, due to nitrate (NO3- ) export and the eutrophication of aquatic systems as well as emissions of nitrous oxide (N2 O) into the atmosphere. Diversified agroecosystems with legume cover crops couple N and carbon (C) inputs to soil and reduce N pollution, but there is a need to identify controls on legume N2 fixation across ecosystems with variable soil conditions. Here, I tested the hypothesis that N mineralization from turnover of soil organic matter (SOM) regulates legume N2 fixation across 10 farms that spanned a gradient of SOM levels. I separated soil samples into two SOM fractions, based on size and density, which are indicators of soil nutrient cycling and N availability (free particulate organic matter and intra-aggregate particulate organic matter [POM]). This study indicates downregulation of legume N2 fixation in diversified agroecosystems with increasing N availability in intra-aggregate POM and increasing N mineralization. Intercropping the legume with a grass weakened the relationship between N in POM and N2 fixation due to N assimilation by the grass. Further, mean rates of N and C mineralization across sites increased with two seasons of a legume-grass cover crop mixture, which could enhance this stabilizing feedback between soil N availability and N2 fixation over time. These results suggest a potential mechanism for the diversity-ecosystem-function relationships measured in long-term studies of agroecosystems, in which regular use of legume cover crops increases total soil organic C and N and reduces negative environmental impacts of crop production.

Drained organic soils under agriculture — The more degraded the soil the higher the specific basal respiration

Drained peatlands are hotspots of carbon dioxide (CO2) emissions from agricultural soils. As a consequence of both drainage-induced mineralisation and anthropogenic mixing with mineral soils, large areas of former peatlands under agricultural use underwent a secondary transformation of the peat (e.g. formation of aggregates). These soils show contents of soil organic carbon (SOC) at the boundary between mineral and organic soils. However, the carbon (C) dynamics of such soils have rarely been studied so far. The aim of the present study was to evaluate the vulnerability of soil organic matter (SOM) to decomposition over the whole range of peat-derived soils under agriculture including very carbon rich mineral soils (76–526 g kg−1 SOC). A total of 62 soil samples covering a broad range of soil and site characteristics were selected from the sample set of the German Agricultural Soil Inventory. Potential CO2 production was measured by aerobic incubation. Fen and bog peat samples were grouped into disturbance classes according to their soil properties. Specific basal respiration rates (SBR), i.e. CO2 fluxes per unit SOC, showed the highest values for the most disturbed samples for both fen peat (13.9 ± 6.0 μg CO2-C g SOC−1 h−1) and bog peat (10.9 ± 4.7 μg CO2-C g SOC−1 h−1). Respiration rates of bog peat increased more strongly with an increasing degree of disturbance than those of fen peat. Perhaps counterintuitively, SOM vulnerability to decomposition thus increased with an increasing degree of disturbance and a decreasing SOC content, indicating positive feedback mechanisms as soon as peat soils are disturbed by drainage. Furthermore, the variability of the SBR increased drastically with increasing degree of disturbance. The turnover of SOM in less disturbed peat samples tended to be higher in samples with higher nitrogen (N) content, higher pH value and lower C:N ratio, while plant-available phosphorus was important for the mineralisation of more severely disturbed peat. However, clear correlations between a single soil property and SBR could not be identified. The high potential of CO2 emissions from organic soils with a low SOC content implies that mixing organic soil with mineral soil does not seem to be a promising option for mitigating greenhouse emissions.

Microbes' role in soil decomposition

Soil Ecology Soils harbor a rich diversity of invertebrate and microbial life, which drives biogeochemical processes from local to global scales. Relating the biodiversity patterns of soil ecological communities to soil biogeochemistry remains an important challenge for ecologists and earth system modelers. Crowther et al. review the state of science relating soil organisms to biogeochemical processes, focusing particularly on the importance of microbial community variation on decomposition and turnover of soil organic matter. Although there is variation in soil communities across the globe, ecologists are beginning to identify general patterns that may contribute to predicting biogeochemical dynamics under future climate change. Science , this issue p. [eaav0550][1] [1]: /lookup/doi/10.1126/science.aav0550

The global soil community and its influence on biogeochemistry.

Soil organisms represent the most biologically diverse community on land and govern the turnover of the largest organic matter pool in the terrestrial biosphere. The highly complex nature of these communities at local scales has traditionally obscured efforts to identify unifying patterns in global soil biodiversity and biogeochemistry. As a result, environmental covariates have generally been used as a proxy to represent the variation in soil community activity in global biogeochemical models. Yet over the past decade, broad-scale studies have begun to see past this local heterogeneity to identify unifying patterns in the biomass, diversity, and composition of certain soil groups across the globe. These unifying patterns provide new insights into the fundamental distribution and dynamics of organic matter on land.

Freeze-thaw and dry-wet events reduce microbial extracellular enzyme activity, but not organic matter turnover in an agricultural grassland soil

Soils in temperate agroecosystems are frequently exposed to extremes of moisture and temperature during which time soil functioning may be negatively affected. The aim of this study was to directly compare the effects of a single dry-wet or freeze-thaw (−5 °C or −20 °C) cycle on extracellular enzyme activity and soil organic matter turnover. We measured the activity of six enzymes before and after imposing the freeze-thaw or dry-rewet events. Our results showed that drying had a much greater impact on total enzyme activity than a −20 °C freezing event (38 vs. 10% reduction, respectively), while freezing at −5 °C had no appreciable effect. Enzyme activity recovered back to control levels relatively quickly which we ascribe to de novo exoenzyme production (within 3 d for the −20 °C freeze-thaw treatment and 14 d for the dry-wet treatment). We added 14C-labelled plant residues to the soil prior to imposing the same thermal or moisture stress events. Monitoring residue decomposition before and after imposing the treatments indicated that none of the stress regimes greatly affected organic matter turnover rates. Our results did reveal, however, a pulse of 14CO2 which was produced during the drying and freezing events themselves. We ascribe this to a shift in microbial metabolism and the production of stress avoidance metabolites (e.g. osmo- and cryo-protectants, membrane lipids). Our work highlights that extreme weather events may affect exoenzyme activity, however, these responses are transitory and are unlikely to greatly affect soil organic matter cycling unless they occur at high frequency.

Sugarcane straw management for bioenergy: effects of global warming on greenhouse gas emissions and soil carbon storage

Global warming can intensify the soil organic matter (SOM) turnover, damaging soil health. Crop residues left on the soil are important to maintain a positive SOM budget and nutrient cycling. But, sugarcane (Saccharum officinarum) straw has been removed from the field for bioenergy purposes. We hypothesize that global warming, together with straw removal, will negatively impact Brazil’s ethanol carbon footprint. Thus, we conducted an experiment under controlled conditions to evaluate the impacts of warming and straw removal on greenhouse gas (GHG) emissions, soil carbon and nitrogen storage, and nutrient cycling. Two soils (Rhodic Acrisol and Eutric Nitisol) were tested with three rates of sugarcane straw removal (no removal (NR): equivalent to 12 Mg ha−1; medium removal (MR): 6 Mg ha−1; and total removal (TR): bare soil) and submitted to two temperatures (24 °C and 30 °C) and soil moistures (30% and 50%). Straw decomposition was stimulated by lower rates of straw removal, resulting in increases on carbon dioxide (CO2) emissions between 5 to 14 times, and N2O between 25 and 40%. There were no significant methane (CH4) fluxes. Soil carbon and nitrogen did not change due to straw removal, yet labile carbon fractions (living and non-living) were highly impacted, causing reductions of 15 to 40% on the carbon management index (CMI). Furthermore, straw removal reduced nutrient cycling between 10 and 30%. Overall, in a scenario of warming, our findings point to an intensification of SOM dynamic, resulting in increases of 35% on the GHG emissions and a CMI reduction by 20%. In practical terms, at least 6 Mg ha−1 of straw should be left in the field, guaranteeing raw-material for bioenergy, without causing major impacts on the GHG emission and soil attributes.

Soil Microbial Biomass Size and Nitrogen Availability Regulate the Incorporation of Residue Carbon into Dissolved Organic Pool and Microbial Biomass

Microbial biomass (MB) plays a critical role in residue decomposition and soil organic matter (SOM) turnover. We investigated the effects of the initial size of soil MB pool and nitrogen (N) availability on the incorporation of ryegrass residue carbon (C) into microbial biomass C (MBC) and dissolved organic C (DOC). Soils from a row crop system (CS) and an adjacent grass sod (GS) were preincubated with (i.e., increased MB) and without (i.e., unchanged MB) glucose to produce soils with two levels of initial MB size before residue additions. Ammonium sulfate was added to test the effect of N availability. Residue addition increased DOC production in both soils, regardless of initial MB size and N availability, contributing 9 to ∼22% to the total pool. Residue quality was observed to affect the incorporation of residue C into DOC, which depended on soil type and initial MB size. However, the assimilation of residue C into MBC was not affected by the quality of ryegrass residue. Compared with the control (which did not have residue and N additions), a significant increase in SOM‐derived MBC by residue addition was observed in CS without glucose preincubation but not in the glucose preincubated CS and in GS. This indicated that the primed MBC by residue addition depended on initial MB size and soil type. The assimilation of residue C into MB was marginally inhibited by the preincubation with glucose in GS but was promoted in CS. With the addition of extra N, higher ryegrass‐derived MBC was observed in CS with glucose preincubation compared with the corresponding treatments without preincubation, which was not found in GS. These results suggested that residue‐derived MBC was not only regulated by initial MB size and N availability but also was affected by soil management history. However, N addition reduced ryegrass‐derived DOC production in GS without glucose preincubation. Apparently, both soil MB size and N availability largely affected the assimilation and incorporation of residue C in soil labile pools (i.e., DOC and MBC), and the extent of this relationship varied between two agricultural soils.Core IdeasRyegrass residue addition primed the production of SOM‐derived DOC and MBC.Residue quality affected ryegrass‐derived DOC in crop soils.N addition reduced ryegrass‐derived DOC in grass soils.N addition increased ryegrass‐derived MBC in crop soils.Initial MB and N availability regulated the incorporation of residue C into DOC and MBC.

Tree species affect soil organic matter stocks and stoichiometry in interaction with soil microbiota

The purpose of this research was to evaluate tree species effects on quantitative and qualitative soil organic matter (SOM) properties of forest floors and mineral soil layers. Additionally, the contribution of soil microbial biomass to SOM was studied in five forest stands with different dominant tree species.The study was conducted at the afforested spoil heap ‘Sophienhöhe’ located at the lignite open-cast mine Hambach near Jülich, Germany. The 35 year-old afforested sites consisted of monocultural stands of Douglas fir (Pseudotsuga mienziesii), pine (Pinus nigra), beech (Fagus sylvatica) and red oak (Quercus rubra) as well as a mixed deciduous stand site planted mainly with hornbeam (Carpinus betulus), lime (Tilia cordata) and common oak (Quercus robur). There, boundary conditions regarding soil, climate, topography and management were highly similar, equivalent to a common garden experiment but on landscape level. Because the parent material used for site recultivation was free from organic matter or coal material, the SOM accumulation is a result of in situ soil development.Tree species had a significant effect on soil organic carbon (SOC) stocks, stoichiometric patterns of C, hydrogen (H), nitrogen (N), oxygen (O) and sulfur (S) and the microbial biomass carbon (MBC) content in the forest floor and the top mineral soil layers (0–5 cm, 5–10 cm, 10–30 cm). In general, forest floor SOC stocks were significantly higher in coniferous forest stands compared to deciduous tree species. Differences in SOM quantity became less pronounced with increasing depth, while stoichiometric molar ratios of SOM as indices of litter turnover and SOM composition differed also in deeper layers. Differences in H:C and O:C ratios among tree species clearly increased along the depth gradient in mineral soils, indicating that SOM turnover by oxidative processes depends on tree species. Differences in depth gradients of the microbial quotient (MBC to SOC ratio) among tree species emphasized differences in the microbial C turnover. Furthermore, the relationship between the microbial quotient and SOM stoichiometry (C:N and C:S ratio) became stronger with increasing soil depth. This suggests that N and especially S limitation determined the microbial turnover of SOM in deeper mineral soil layers.

Post-agricultural restoration: Implications for dynamics of soil organic matter pools

In order to bridge the gap of knowledge in respect of soil organic matter (SOM) dynamics of post-agricultural Luvisols during restoration, the study focused on alteration processes of functionally different SOM pools, 14C ages, and C turnover rates in a chronosequential approach. The study comprises three Luvisol chronosequences of 37 years (North), 120 years (Middle), and 42 years (South) across a climate gradient of the temperate broad-leaved forests of European Russia. Restoration led to SOM accumulation within both active (free particulate organic matter (POM) and occluded POM and passive (clay fraction) pools, and as a result, in gains of total organic carbon (C). Accumulation of new C was confirmed by increasing ∆14C signatures of occluded POM and clay fractions. After 22 years of restoration, ∆14C signatures progressed from negative to positive values for the occluded POM fraction, whereas they showed a similar development but remained negative for the clay faction. This highlights the fact that the incorporation of new C into the passive pool takes place, but that it occurs at a slower rate compared to that of the active pool. The 14C age of occluded POM fraction declined from 600 to 1200 years before present (BP) in arable sites to about 200 years BP after 22 years of restoration and thereafter. The 14C age of the clay fraction decreased from 1670 to 2660 years BP in arable soils to 750 years BP in 22 year abandoned site, 450–310 years BP in 32–66 year abandoned sites, and 200–370 years BP in near-natural forests. This decline of the 14C age reveals a change of the proportions between old and young C within the passive pool caused by management and the development of an ecosystem towards a steady state. Recovery of C was accompanied by initially increasing and then decreasing turnover rates of SOM, both again, much more pronounced in the active pool. These dynamics trace an initial ecosystem disturbance after abandonment, which slows down with time. Although C recovery and adjusted turnover rates of SOM progressed towards a new steady state of ecosystem; full restoration was not achieved within the chronosequential time scale of 120 years.

Effect of the amount of organic trigger compounds, nitrogen and soil microbial biomass on the magnitude of priming of soil organic matter.

Priming effects (PEs) are defined as short-term changes in the turnover of soil organic matter (SOM) caused by the addition of easily degradable organic compounds to the soil. PEs are ubiquitous but the direction (acceleration or retardation of SOM decomposition) and magnitude are not easy to predict. It has been suggested that the ratio between the amount of added PE-triggering substrate to the size of initial soil microbial biomass is an important factor influencing PEs. However, this is mainly based on comparison of different studies and not on direct experimentation. The aim of the current study is to examine the impact of glucose-to-microbial biomass ratios on PEs for three different ecosystems. We did this by adding three different amounts of 13C-glucose with or without addition of mineral N (NH4NO3) to soils collected from arable lands, grasslands and forests. The addition of 13C-glucose was equivalent to 15%, 50% and 200% of microbial biomass C. After one month of incubation, glucose had induced positive PEs for almost all the treatments, with differences in magnitude related to the soil origin and the amount of glucose added. For arable and forest soils, the primed C increased with increasing amount of glucose added, whereas for grassland soils this relationship was negative. We found positive correlations between glucose-derived C and primed C and the strength of these correlations was different among the three ecosystems considered. Generally, additions of mineral N next to glucose (C:N = 15:1) had little effect on the flux of substrate-derived C and primed C. Overall, our study does not support the hypothesis that the trigger-substrate to microbial biomass ratio can be an important predictor of PEs. Rather our results indicate that the amount of energy obtained from decomposing trigger substrates is an important factor for the magnitude of PEs.