Potato Tubers Research Articles

Genotype by Environment Interaction (GEI) Effect for Potato Tuber Yield and Their Quality Traits in Organic Multi-Environment Domains in Poland

Genotype by Environment Interaction (GEI) Effect for Potato Tuber Yield and Their Quality Traits in Organic Multi-Environment Domains in Poland

First draft genome sequence of a Pectobacterium polaris strain isolated in South Africa from potato tuber affected by soft rot.

A phytopathogenic strain of Pectobacterium polaris (designated SRB2) was isolated for the first time in South Africa from a potato tuber affected by soft rot. The draft genome of strain SRB2 encodes various plant cell wall-degrading enzymes and genes associated with biofilm formation and virulence. Antibiotic resistance genes were not detected.

Sodium silicate accelerates suberin accumulation at wounds of potato tuber by inducing phenylpropanoid pathway and fatty acid metabolism during healing

Although soluble silicate was reported to accelerate wound healing in muskmelon fruit through encouraging the deposition of lignin or free fatty acids, whether sodium silicate affects the biosynthesis, cross-linking and transport of suberin monomers during potato wound healing remains unknown. In this study, sodium silicate upregulated the expression and activity of 4-coumarate: coenzyme A ligase (4CL), phenylalanine ammonia lyase (PAL), and promoted the synthesis of phenolic acids (caffeic acid, p-coumaric acid, cinnamic acid, sinapic acid, and ferulic acid) in tuber wounds. Meanwhile, sodium silicate upregulated the expression of glycerol-3-phosphate acyltransferase (StGPAT), fatty acyl reductase (StFAR), long-chain acyl-CoA synthetase (StLACS), β-ketoacyl-CoA synthase (StKCS), and cytochrome P450 (StCYP86A33), and thus increased the levels of α, ω-diacids, ω-hydroxy acids, and primary alcohols in wounds. Sodium silicate also induced the expression of ω-hydroxy acid/fatty alcohol hydroxycinnamoyl transferase (StFHT), ABC transporter (StABCG), and promoted the deposition of suberin in wound surface, hence reducing tuber disease index and weight loss during healing. Taken together, sodium silicate may accelerate suberin accumulation at potato tubers wound through inducing the phenylpropanoid pathway and fatty acid metabolism.

Phenazines are involved in the antagonism of a novel subspecies of Pseudomonas chlororaphis strain S1Bt23 against Pythium ultimum

Long-term use of chemical fungicides to control plant diseases caused by fungi and oomycetes has led to pathogen resistance and negative impacts on public health and environment. There is a global search for eco-friendly methods and antagonistic bacteria are emerging as alternatives. We isolated a potent antagonistic bacterial strain (S1Bt23) from woodland soil in Québec, Canada. Taxonomic characterization by 16S rRNA, multi-locus sequence analysis, pairwise whole-genome comparisons, phylogenomics and phenotypic data identified strain S1Bt23 as a novel subspecies within Pseudomonas chlororaphis. In dual culture studies, strain S1Bt23 exhibited potent mycelial growth inhibition (60.2–66.7%) against Pythium ultimum. Furthermore, strain S1Bt23 was able to significantly bioprotect potato tuber slices from the development of necrosis inducible by P. ultimum. Annotations of the whole genome sequence of S1Bt23 revealed the presence of an arsenal of secondary metabolites including the complete phenazine biosynthetic cluster (phzABCDEFG). Thin-layer (TLC) and high-performance liquid (HPLC) chromatographic analyses of S1Bt23 extracts confirmed the production of phenazines, potent antifungal compounds. CRISPR/Cas9-mediated deletion of phzB (S1Bt23ΔphzB) or phzF (S1Bt23ΔphzF) gene abrogated phenazine production based on TLC and HPLC analyses. Also, S1Bt23ΔphzB and S1Bt23ΔphzF mutants lost antagonistic activity and bioprotection ability of potato tubers against P. ultimum. This demonstrated that phenazines are involved in the antagonistic activity of S1Bt23 against P. ultimum. Finally, based on genotypic and phenotypic data, we taxonomically conclude that S1Bt23 represents a novel subspecies for which the name Pseudomonas chlororaphis subsp. phenazini is proposed.

The brassinosteroid receptor StBRI1 promotes tuber development by enhancing plasma membrane H+-ATPase activity in potato.

The brassinosteroid (BR) receptor BRASSINOSTEROID-INSENSITIVE 1 (BRI1) plays a critical role in plant growth and development. Although much is known about how BR signaling regulates growth and development in many crop species, the role of StBRI1 in regulating potato (Solanum tuberosum) tuber development is not well understood. To address this question, a series of comprehensive genetic and biochemical methods were applied in this investigation. It was determined that StBRI1 and Solanum tuberosum PLASMA MEMBRANE (PM) PROTON ATPASE2 (PHA2), a PM-localized proton ATPase, play important roles in potato tuber development. The individual overexpression of StBRI1 and PHA2 led to a 22% and 25% increase in tuber yield per plant, respectively. Consistent with the genetic evidence, in vivo interaction analysis using double transgenic lines and PM H+-ATPase activity assays indicated that StBRI1 interacts with the C-terminus of PHA2, which restrains the intramolecular interaction of the PHA2 C-terminus with the PHA2 central loop to attenuate autoinhibition of PM H+-ATPase activity, resulting in increased PHA2 activity. Furthermore, the extent of PM H+-ATPase autoinhibition involving phosphorylation-dependent mechanisms corresponds to phosphorylation of the penultimate Thr residue (Thr-951) in PHA2. These results suggest that StBRI1 phosphorylates PHA2 and enhances its activity, which subsequently promotes tuber development. Altogether, our results uncover a BR-StBRI1-PHA2 module that regulates tuber development and suggest a prospective strategy for improving tuberous crop growth and increasing yield via the cell surface-based BR signaling pathway.

Comprehensive genomic analysis and expression profiling of the cytochrome P450 genes during abiotic stress and flavonoid biosynthesis in potato (Solanum tuberosum)

The research focused on the cytochrome P450 (CYP) superfamily, a prominent enzyme family involved in plant metabolism. A total of 253 StCYP genes from the potato genome were investigated and characterized through various methods, including phylogentic analysis, physical and chemical characterization, chromosome localization, gene structure and conserved protein domain classification, gene duplication occurrences, collinearity and expression pattern analysis. The 253 StCYPs were classified into seven clans and 33 families, distributed unevenly across 12 chromosomes. Collinearity analysis revealed 28 pairs of orthologous genes between potato StCYPs and Arabidopsis AtCYPs. Moreover, the expression of the StCYPs in various tissue parts of doubled haploid (DM) potatoes under abiotic stress and exogenous hormone treatment was investigated by using RNA-seq data from the PGSC database. It was discovered that one StCYP gene likely contributes to drought stress response through the ABA-dependent pathway. Furthermore, RNA-seq analysis of pigmented tuber flesh from three potato clones at three developmental stages enabled the identification of StCYPs potentially implicated in the flavonoid biosynthesis in potato tubers. In particular, StCYP705A-like was further validated for its potential role in this process. Employing Gfanno software in conjunction with RNA-seq data, seven StCYP genes (Two StC4H, three StF3′H, one StFNS Ⅱ and one StF3′5′H) were identified as flavonoid biosynthetic pathway genes in potato. Additionally, five StCYPs in CYP 71 clan demonstrated a strong association with flavonoid biosynthesis. These findings lay a groundwork for a more comprehensive understanding of the StCYP gene family and further exploration of the functions of StCYP genes in potato abiotic stress tolerance and flavonoids biosynthesis.

GROUNDWATER QUALITY INFLUENCING THE POTATO TUBER YIELD IN DOABA REGION OF PUNJAB, INDIA

Groundwater as a source of irrigation is extensively practiced in the Doaba region of Punjab, alongside high inputs such as chemical fertilizers and pesticides. These inputs pose dual threats to the deterioration and deepening of groundwater. Therefore, a survey-based investigation was conducted in the region, involving the collection of groundwater samples, their physico-chemical analysis, and the assessment of harvested potato tuber yields. The data analysis revealed that farmers are extracting groundwater from borewells at a depth of 254.0 feet on average, with a delivery depth of 145.67 feet. The analytical results indicated that all the collected groundwater samples were suitable for irrigation purposes. Furthermore, there was a significantly positive correlation between tuber yield and nitrate content of groundwater. Thus, it is crucial to consider the contribution of nitrate from groundwater when recommending nitrogen usage.

Apple fruit as a biological suppressant for potato tuber sprouting during ambient storage

In many countries, potato (Solanum tuberosum) is a crucial carbohydrate-rich crop and staple food. However, sprouting during storage can adversely affect the quality of the harvested tubers. To maintain the postharvest quality, this study assessed the potential of apple fruit as one of the biological suppressants for potato tuber sprouting at ambient storage. Potato tubers were obtained from four commercial farms. Thereafter, they were stored in a brown paper alone (control) or with apple fruit at ±23 °C for 30-day period. Potato tubers were evaluated for their weight loss, sprouting percentage, decay and soluble sugars during storage duration. Tubers stored with apple fruit had significantly (P < 0.05) reduced physiological weight loss after 30-day storage compared to the control. The results indicated that sprouting was significantly lower on tubers stored with fruit compared to the control. Sucrose, glucose and fructose increased in tubers stored with apple fruit compared to the control, especially in tubers obtained from Jamba and Leeubult. Tubers stored with apple fruit decayed significantly compared to the control in tubers from Jamba and Leeubult. Furthermore, dry matter and starch content were significantly lower tubers stored with apples compared to the control. In conclusion, apple fruit could serve as an effective sprout suppressant for potatoes at ambient storage. Therefore, apple fruit can be adopted as an alternative sprout suppressant to synthetic ethylene gas and various chemicals such as Chloropropham.

First Report of Rhizoctonia solaniAG‐4 HGI Causing Corky Cracks on Potato Tubers in Mauritius

ABSTRACTPotato (Solanum tuberosum L.) is of great economic importance for Mauritius. During a disease survey carried out in a field in one of the major potato‐growing regions of Mauritius, corky cracked lesions with halo and mycelial growth were observed on the skin surfaces of around 45% of tubers. The suspected fungus from the affected areas was isolated on amended potato dextrose agar and after 7 days, several fast‐growing, pale brown Rhizoctonia‐like colonies with a few sclerotia were observed. Additionally, microscopic analysis revealed some cells being multinucleate, forming hyphal branching at right angles with slight constriction together with septum near the branch base. Pathogenicity tests confirmed development of the same symptoms on potato tubers and the causal agent was reisolated successfully. Sequence analysis of the ITS region of representative isolate P114 amplified using ITS1F/ITS4 primers showed that it was identical to several isolates of multinucleate Rhizoctonia solani AG‐4 HGI, and neighbour‐joining phylogenetic analyses confirmed the identification. To our knowledge, this is the first report of R. solani AG‐4 HGI‐infecting potato tubers and causing corky cracks in Mauritius.

Impact of variety and drying methods on the physicochemical, functional, and thermal properties of Ethiopian potato (Plectranthus edulis) tuber flour

This study aimed to analyse the physicochemical, structural, functional, and thermal properties of flour from two indigenous Ethiopian Potato (Plectranthus edulis) varieties, Chanqua and Loffo, and to compare with wheat flour (WF). The study also investigated how oven and sun drying methods affected the physicochemical properties of the flours. The results demonstrated a significant distinction (p ≤ 0.05) between the flour samples and WF, attributable to variations in both the varieties and the drying methods except that no significant difference in pH was observed due to the varieties, and the fibre and ash content did not vary significantly with the drying methods. The moisture content (MC) of the flours ranged from 5.72 % in oven-dried Chanqua Ethiopian potato flour (OD-CEPF) to 7.53 % in sun-dried Loffo Ethiopian potato flour (SD-LEPF), both of which were lower compared to WF. The protein content varied from 4.47 % (SD-CEPF) to 5.93 % (OD-LEPF). FTIR tests revealed a significant impact on the structural changes, leading to variations in the location and intensity of infrared absorption peaks, particularly in sensitive regions. Whereas, the XRD patterns showed characteristic B-type diffraction, with a relative crystallinity (RC) of 31.97 % in CEPF and 30.53 % in LEPF having a significant difference (p ≤ 0.05) between them. LEPF had better flow properties than CEPF, with lower Hausner ratio (HR) (1.16 vs. 1.25), Carr's index (CI) (14.51 % vs. 20.26 %), and angle of repose (31.00° vs. 34.67°). It also showed significantly higher (p ≤ 0.05) water absorption capacity (WAC), oil absorption capacity (OAC) and swelling power (SP) properties than CEPF. The study also indicated notable distinctions in the thermal and paring properties of flours. The oven drying method was found to be superior in enhancing the physicochemical properties, with LEPF showing better physicochemical, functional, structural, and thermal properties than CEPF.

Screening of popularly grown potato varieties against potato tuber moth (Phthorimaea operculella) in storage condition

Screening of popularly grown potato varieties against potato tuber moth (Phthorimaea operculella) in storage condition

Feature Fusion GAN Based Virtual Staining on Plant Microscopy Images.

Virtual staining of microscopy specimens using GAN-based methods could resolve critical concerns of manual staining process as displayed in recent studies on histopathology images. However, most of these works use basic-GAN framework ignoring microscopy image characteristics and their performance were evaluated based on structural and error statistics (SSIM and PSNR) between synthetic and ground-truth without considering any color space although virtual staining deals with color transformation. Besides, major aspects of staining, like color, contrast, focus, image-realness etc. were totally ignored. However, modifications of GAN architecture for virtual staining might be suitable by incorporating microscopy image features. Further, its successful implementation need to be examined by considering various aspects of staining process. Therefore, we designed, a new feature-fusion-GAN for virtual staining followed by performance assessment by framing a state-of-the-art multi-evaluation framework that includes numerous metrics in -qualitative (based on histogram-correlation of color and brightness); quantitative (SSIM and PSNR); focus aptitude (Brenner metrics and Spectral-Moments); and influence on perception (semantic perceptual influence score). For, experimental validation cell boundaries were highlighted by two different staining reagents, Safranin-O and Toluidine-Blue-O on plant microscopy images of potato tuber. We evaluated virtually stained image quality w.r.t ground-truth in RGB and YCbCr color spaces based on defined metrics and results are found very consistent. Further, impact of feature fusion has been demonstrated. Collectively, this study could be a baseline towards guiding architectural upgrading of deep pipelines for virtual staining of diverse microscopy modalities followed by future benchmark methodology or protocols.

Resistance of the CRISPR-Cas13a Gene-Editing System to Potato Spindle Tuber Viroid Infection in Tomato and Nicotiana benthamiana.

Gene-editing technology, specifically the CRISPR-Cas13a system, has shown promise in breeding plants resistant to RNA viruses. This system targets RNA and, theoretically, can also combat RNA-based viroids. To test this, the CRISPR-Cas13a system was introduced into tomato plants via transient expression and into Nicotiana benthamiana through transgenic methods, using CRISPR RNAs (crRNAs) targeting the conserved regions of both sense and antisense genomes of potato spindle tuber viroid (PSTVd). In tomato plants, the expression of CRISPR-Cas13a and crRNAs substantially reduced PSTVd accumulation and alleviated disease symptoms. In transgenic N. benthamiana plants, the PSTVd levels were lower as compared to wild-type plants. Several effective crRNAs targeting the PSTVd genomic RNA were also identified. These results demonstrate that the CRISPR-Cas13a system can effectively target and combat viroid RNAs, despite their compact structures.

Influence of Germination Time on the Morphological, Structural, Vibrational, Thermal and Pasting Properties of Potato Starch from Solanum tuberosum Phureja Group

AbstractThis work focuses on the study of the physicochemical changes that take place during a short germination period in flours and starches of the Creole potato tuber. To this end, the changes in the composition of flours and the structural, thermal, vibrational, functional and pasting changes of the isolated starches from germinated potatoes were evaluated during the 12-day germination period, measured every 4 days. The water absorption index (WAI) and the swelling powder showed no significant changes. Germination resulted in a decrease in fat and ash content, but an increase in protein and amylose content. Scanning electron microscopy (SEM) showed no changes in the morphology of the starch during germination. X-ray diffraction showed that isolated Creole potato starch contains nanocrystals with hexagonal crystal structure, which are not affected by germination. Differential scanning calorimetry (DSC) shows a shift of the gelatinization peak to the right, which could be attributed to the concentration effect. The pasting profiles of the isolated starches show no significant changes, indicating that the starch granules do not suffer any external damage due to the enzymatic process during germination and that the final viscosity behaves like a hydrogel.

Updated aspects of alpha-Solanine as a potential anticancer agent: Mechanistic insights and future directions.

Cancer remains a critical global health challenge, with limited progress in reducing mortality despite advancements in diagnosis and treatment. The growing resistance of tumors to existing chemotherapy exacerbates this burden. In response, the search for new anticancer compounds from plants has intensified, given their historical success in yielding effective treatments. This review focuses on α-solanine, a glycoalkaloid primarily derived from potato tubers and nightshade family plants, recognized for its diverse biological activities, including anti-allergic, antipyretic, anti-inflammatory, anti-diabetic, and antibiotic properties. Recently, α-solanine has gained attention as a potential anticancer agent. Utilizing resources like PubMed/MedLine, ScienceDirect, Web of Science, Scopus, the American Chemical Society, Google Scholar, Springer Link, Wiley, and various commercial websites, this review consolidates two decades of research on α-solanine's anticancer effects and mechanisms against nine different cancers, highlighting its role in modulating various signaling pathways. It also discusses α-solanine's potential as a lead compound in cancer therapy. The abundant availability of potato peel, often discarded as waste or sold cheaply, is suggested as a sustainable source for large-scale α-solanine extraction. The study concludes that α-solanine holds promise as a standalone or adjunctive cancer treatment. However, further research is necessary to optimize this lead compound and mitigate its toxicity through various strategies.

Effect of Edible Wax on Postharvest Greening of Potato Tubers during Light Exposure

Effect of Edible Wax on Postharvest Greening of Potato Tubers during Light Exposure

&lt;i&gt;Fusarium&lt;/i&gt; species affecting potato tubers and tomato fruits in Uganda

Irish potato and tomato are among the most widely cultivated crops in Uganda. In 2020, samples of affected potato tubers and tomato fruits were collected from farms across four regions in Uganda for analysis. A total of 22 strains of Fusarium spp. were isolated from potato tubers and seven strains were isolated from tomato fruits. Identification of the fungal species was accomplished using cultural and morphological characteristics, as well as DNA sequencing targeting specific regions: ITS1–5.8S–ITS2, parts of the elongation factor 1 (tef 1) gene, and beta-tubulin (β-tub) gene. The analysis of the isolated strains from potato tubers revealed the presence of Fusarium incarnatum-equisety species complex, F. sambucinum species complex, F. oxysporum species complex, F. solani species complex. Additionally, F. incarnatum-equiseti species complex was detected in tomato fruits. All the investigated strains exhibited the ability to successfully infect both injured tomato fruits and potato tubers. Tested strains were susceptible to difenoconazole (ЕС50 = 0.08–8.5 mg/L) and thiabendazole (EC50 = 0.67–5.1 mg/L).

Molecular Insights into the Role of Sterols in Microtuber Development of Potato Solanum tuberosum L.

Potato tubers are reproductive and storage organs, enabling their survival. Unraveling the molecular mechanisms that regulate tuberization is crucial for understanding how potatorespond to environmental stress situations and for potato breeding. Previously, we did a transcriptomic analysis of potato microtuberization without light. This showed that important cellular processes like ribosomal proteins, cell cycle, carbon metabolism, oxidative stress, fatty acids, and phytosterols (PS) biosynthesis were closely connected in a protein-protein interaction (PPI) network. Research on PS function during potato tuberization has been scarce. PS plays a critical role in regulating membrane permeability and fluidity, and they are biosynthetic precursors of brassinosteroids (BRs) in plants, which are critical in regulating gene expression, cell division, differentiation, and reproductive biology. Within a PPI network, we found a module of 15 genes involved in the PS biosynthetic process. Darkness, as expected, activated the mevalonate (MVA) pathway. There was a tight interaction between three coding gene products for HMGR3, MVD2, and FPS1, and the gene products that synthetize PS, including CAS1, SMO1, BETAHSD, CPI1, CYP51, FACKEL, HYDRA1, SMT2, SMO2, STE1, and SSR1. Quantitative real-time polymerase chain reaction (qRT-PCR) confirmed the expression analysis of ten specific genes involved in the biosynthesis of PS. This manuscript discusses the potential role of genes involved in PS biosynthesis during microtuber development.

Metabolic engineering of crocins and picrocrocin apocarotenoids in potato group phureja

AbstractThe stigmas of Crocus sativus accumulate the exclusive apocarotenoids crocin and picrocrocin, which are dried and desiccated to make commercial saffron. In addition to providing characteristic organoleptic qualities, saffron apocarotenoids are valuable compounds in the pharmaceutical and health industries. Previously, we developed Desirée potato tubers enriched with these apocarotenoids which also showed increased potential benefits for human health. In the current study, Solanum tuberosum (S. tuberosum) Group Phureja 01H15 which accumulates high levels of zeaxanthin, was engineered to produce saffron apocarotenoids to increase the levels of these metabolites in potato tubers using a construct namely O6, which contains the CsCCD2L, UGT74AD1, and UGT709G1 genes necessary for the biosynthesis of crocin and picrocrocin under the control of the patatin promoter. Here, we obtained transgenic S. tuberosum Group Phureja 01H15 lines with high concentrations of crocins and picrocrocin (up to 3.648 mg/g DW, 2.345 mg/g DW, respectively), which were up to 10 and 3 times higher than those obtained in the Desirée background, respectively. Furthermore, we performed transcriptome analyses of tubers from Desirée and 01H15 wild type and carrying O6 construct. Differentially expressed gene analysis revealed transcript changes not only on tuber carotenoid and apocarotenoid genes but also in other related pathways, suggesting a possible role in isoprenoid metabolism remodeling. Thus, this heterologous system serves as a robust platform for the production of these valuable metabolites.

Genotypic and Phenotypic Analyses Show Ralstonia solanacearum Cool Virulence is a Quantitative Trait Not Restricted to "Race 3 biovar 2".

Most Ralstonia solanacearum species complex strains cause bacterial wilts in tropical or subtropical zones, but the group known as Race 3 biovar 2 (R3bv2) is cool virulent and causes potato brown rot at lower temperatures. R3bv2 has invaded potato-growing regions around the world but is not established in the United States. Phylogenetically, R3bv2 corresponds to a subset of the R. solanacearum phylotype IIB clade, but little is known about the distribution of the cool virulence phenotype within phylotype IIB. Therefore, genomes of 76 potentially cool virulent phylotype IIB strains and 30 public genomes were phylogenetically analyzed. A single clonal lineage within the sequevar 1 subclade of phylotype IIB that originated in South America has caused nearly all brown rot outbreaks worldwide. To correlate genotypes with relevant phenotypes, we quantified virulence of ten Ralstonia strains on tomato and potato at both 22°C and 28°C. Cool virulence on tomato did not predict cool virulence on potato. We found that cool virulence is a quantitative trait. Strains in the sequevar 1 pandemic clonal lineage caused the most disease, while other R3bv2 strains were only moderately cool virulent. However, some non-R3bv2 strains were highly cool virulent and aggressively colonized potato tubers. Thus, cool virulence is not consistently correlated with strains historically classified as R3bv2 group. To aid detection of sequevar 1 strains, this group was genomically delimited in the LINbase web server and a sequevar 1 diagnostic primer pair was developed and validated. We discuss implications of these results for the R3bv2 definition.