Tree spacing and branch architecture are critical for the productivity of high-density orchards. The influence of two tree spacings of 45.7 cm × 366 cm and 91.4 cm × 366 cm each with two branch architectures or configurations of shortened branch (ShBr) or overlapped branch (OverBr) on tree growth, yield components, fruit quality, and leaf mineral nutrients in an ‘Aztec Fuji’ apple (Malus domestica Borkh.) orchard with a 60-degree Tatura trellis (V) system was studied over 5 years. Trees planted with 91.4-cm spacing had a significantly greater trunk cross-sectional area (TCSA), higher number of fruit and greater yield per tree, and greater cumulative yield efficiency than those of trees planted with 45.7-cm spacing during 2012–16. Tree spacing did not significantly affect fruit weight and firmness at harvest or after storage. However, trees planted with 91.4-cm spacing always had higher fruit color, sunburn, fruit russet, and watercore at harvest and a higher soluble solids concentration but lower fruit bitter pit at harvest and after storage compared to those of trees with 45.7-cm spacing. These differences were often significant. Trees with 45.7-cm spacing had significantly higher leaf concentrations of potassium, iron, copper, and manganese and relatively higher leaf zinc than those of trees with 91.4-cm spacing. Trees trained according to ShBr architectures had a relatively larger TCSA than those of trees with an OverBr configuration every year. Branching architectures did not affect the number of fruits per tree, yield per tree, yield per hectare, yield efficiency, or biennial bearing index in any year. Trees with a ShBr architecture had significantly larger fruits than those with an OverBr system every year and over the 5 years. Trees with a ShBr architecture had higher average leaf fresh and dry weights and calcium concentration but a similar percentage of dry weight compared to those of trees with an OverBr architecture.