Tropical Coral Research Articles

Modelling Marine Heatwaves Impact on Shallow and Upper Mesophotic Tropical Coral Reefs

Abstract Coral reefs ecosystems, often compared to rain forests for their high biodiversity, are threatened by ocean warming causing coral bleaching when the symbiotic relationship between dinoflagellates and corals breaks under high ocean temperatures. Thermal stress from marine heatwaves occur both at the surface and subsurface with subsurface marine heatwaves lasting longer with potentially higher cumulative intensities. However, global coral bleaching models generally ignore the differences in thermal stress between surface and sea-bed levels. Here, we define marine heatwaves at sea-bed level to model coral bleaching with daily resolution from May 6th 1993 to December 31st 2023, for 9944 tropical coral reefs between 0 and 50m depths. We show that deeper reefs experience on average higher thermal stress and bleaching compared to surface reefs. Using surface temperature data to model bleaching for deeper corals underestimates bleaching intensities by an average of 6 ± 9% compared to the subsurface calibrated model. Our study is a starting point for more accurate coral bleaching modelling, providing additional evidence to reshape our perception of deeper coral reefs as potential refugees from climate change. 

Unifying Coral Reef States Through Space and Time Reveals a Changing Ecosystem

ABSTRACTAimEcological state shifts that alter the structure and function of entire ecosystems are a concerning consequence of human impact. Yet, when, where and why discrete ecological states emerge remains difficult to predict and monitor, especially in high‐diversity systems. We sought to quantify state shifts and their drivers through space and time in the most ecologically complex marine ecosystem: tropical coral reefs.LocationWorldwide.Time Period1987–2019.Major Taxa StudiedCoral reef communities.MethodsUsing a global dataset of 3375 coral reef surveys, along with 13 time series datasets ranging between 1987 and 2019, we applied a novel double‐dichotomy approach to classify coral reefs into four simplified and discrete states based on the relative contributions of corals versus algae to benthic cover and small‐bodied versus large‐bodied fishes to fish standing stock. We then examined state shifts considering a range of spatial predictors and tested whether states have shifted directionally over time, and the nature of the most common transitions.ResultsWe show that geographic, environmental and anthropogenic context fundamentally shapes coral reef states at the local scale, which explains disparities among case studies, and stakes out critical baseline expectations for regional management efforts. We also reveal clear multi‐decadal state shifts on coral reefs: over time, systems dominated by reef‐building corals and small‐bodied, planktivorous fishes tend to have been replaced with reefs characterised by algae and larger‐bodied fishes.Main ConclusionsOur results suggest a previously unrecognised transition from systems that harness external subsidies through small‐bodied consumers associated with structurally complex live corals, to herbivore‐dominated systems with stronger bottom‐up dynamics. Overall, the partitioning of complex reef ecosystems into a small suite of discrete ecological states suggests that spatial context‐dependency, shifting baselines and changes in reef functioning are crucial considerations for coral reef management in the 21st century.

Preventing Bleaching in Tropical Corals by Using Thermally Resilient Symbiont Zooxanthellae: All Hands‐On Deck!

ABSTRACTThe current rapid climate warming is expected to cause an ocean temperature increase of 3°C–5°C by 2100, leading to deoxygenated and acidified tropical seas. Without mitigation measures, the total loss of tropical corals is inevitable. Already, one‐third of tropical reefs are considered permanently lost. Coral bleaching initiated by the loss of symbionts, the photosynthetic zooxanthellae, is the main process whereby corals respond to thermal stress, followed by recovery. However, increased thermal stress and frequency of bleaching have caused widespread coral recovery failure. Zooxantheallae of the genus Symbiodinium are considered the thermally vulnerable part of the coral symbiosis. In recent decades, warming has displaced genotypes of lower thermal resilience to subtropical latitudes; few genotypes of higher temperature tolerance remain abundant in tropical seas, but these will not withstand warming predictions either. Interestingly, high temperatures in the Red Sea have selected for exceptionally heat‐resistant coral genotypes and for the highest known thermal resilience in endemic zooxanthellae at the same time. Actions to overcome the coral bleaching crisis have been proposed by combining coral ecophysiology and mass culturing of thermally resilient Red Sea symbionts for naturalisation to the global tropical ocean, including restoration of collapsed reefs using corals with thermally resilient symbiont genotypes.

Tropical coral records of monthly ocean-temperature changes during the last deglaciation from IODP drilling

Tropical coral records of monthly ocean-temperature changes during the last deglaciation from IODP drilling

In Vivo Lifetime Imaging of the Internal O2 Dynamics in Corals with near-Infrared-Emitting Sensor Nanoparticles.

Mapping of O2 with luminescent sensors within intact animals is challenging due to attenuation of excitation and emission light caused by tissue absorption and scattering as well as interfering background fluorescence. Here we show the application of luminescent O2 sensor nanoparticles (∼50-70 nm) composed of the O2 indicator platinum(II) tetra(4-fluoro)phenyltetrabenzoporphyrin (PtTPTBPF) immobilized in poly(methyl methacrylate-co-methacrylic acid) (PMMA-MA). We injected the sensor nanoparticles into the gastrovascular system of intact colony fractions of reef-building tropical corals that harbor photosynthetic microalgae in their tissues. The sensor nanoparticles are excited by red LED light (617 nm) and emit in the near-infrared (780 nm), which enhances the transmission of excitation and emission light through biological materials. This enabled us to map the internal O2 concentration via time-domain luminescence lifetime imaging through the outer tissue layers across several coral polyps in flowing seawater. After injection, nanoparticles dispersed within the coral tissue for several hours. While luminescence intensity imaging showed some local aggregation of sensor particles, lifetime imaging showed a more homogeneous O2 distribution across a larger area of the coral colony. Local stimulation of symbiont photosynthesis in corals induced oxygenation of illuminated tissue areas and formation of lateral O2 gradients toward surrounding respiring tissues, which were dissipated rapidly after the onset of darkness. Such measurements are key to improving our understanding of how corals regulate their internal chemical microenvironment and metabolic activity, and how they are affected by environmental stress such as ocean warming, acidification, and deoxygenation. Our experimental approach can also be adapted for in vivo O2 imaging in other natural systems such as biofilms, plant and animal tissues, as well as in organoids and other cell constructs, where imaging internal O2 conditions are relevant and challenging due to high optical density and background fluorescence.

Low incidence of microplastics in coral reefs of Kāneʻohe Bay, Hawaiʻi, USA

This study investigated microplastic and other micro-debris pollution in sediment, seawater, sea cucumbers, and corals from fringing and patch reefs in Kāneʻohe Bay, Oʻahu, Hawaiʻi, USA. Microplastic pollution in Kāneʻohe Bay Bay was low compared to other tropical coral reefs. Microplastics were detected in sediments (29 %), sea cucumbers (9 %), and coral (0–2 %) samples but were not quantifiable. Seawater had quantifiable microplastic (< 0.5 mm) and macroplastic (> 0.5 mm) pollution, with mean concentrations ranging from 0.0061 to 0.081 particles m−3. Most particles detected in seawater samples were larger, floating plastic debris consisting mostly of polyethylene, polypropylene fragments, and fibers. Across the other matrices, the most detected particles were polyester, polypropylene, and cotton fibers. These results provide baseline data for this important coral reef ecosystem, and further monitoring is recommended to understand the seasonal and long-term trends in microplastic pollution and its potential future impacts.

Microplastic pollution in tropical coral reef ecosystems from the coastal South China Sea and their impacts on corals in situ

Coral reefs possess extremely high ecological value in tropical and subtropical waters worldwide. Microplastics as emerging and pervasive pollutants pose a great threat to the health of coral ecosystems. However, in situ studies on microplastics pollution and its impacts in coral ecosystems globally are limited. The occurrence characteristics of microplastics in the environment mediums and reef-dwelling organisms were investigated in coral reef areas from the southern Hainan Island, and the impacts of microplastics on corals in situ were evaluated in this study. Average microplastics abundance was 9.48 items L-1 in seawater, 190.00 items kg-1 in sediment, 0.36 items g-1 in coral, 1.50 items g-1 in shellfish, 0.48 items g-1 in fish gill, and 1.71 items g-1 in fish gastrointestinal tract. The prevalent microplastics in the above samples were characterized as being less than 1000 µm in size, fibrous, and transparent, with predominant polymer types as polyethylene terephthalate, polypropylene, polyethylene, and rayon. The microplastic enrichment capacity of different corals varied (Pocillopora >Acropora >Sinularia). Notably, microplastics were more abundant on the surface of corals compared to their interiors, with distinct characteristics observed, including larger-sized (>500 µm) and fiber-shaped polyethylene terephthalate microplastics on the surface and smaller-sized (20–200 µm) fragmented polyethylene microplastics within coral interiors. Furthermore, the investigation showed species-specific impacts of microplastics on corals in situ, including photosynthetic activity of photosymbionts and antioxidant and immune activities of corals. Furthermore, the ecological risks of microplastics were minor across most environmental media in the studied areas, with exceptions in the bottom seawater and surface sediment of YLW, which exhibited extreme and medium risk levels, respectively. Coral risk levels were generally medium, except for dangerous levels in DDH and high levels in LHT. The potential sources of microplastics in the marginal reefs of southern Hainan Island were primarily tourism, residential, and fishing activities.

Low retention of restocked laboratory‐reared long‐spined sea urchins Diadema antillarum due to Spanish hogfish Bodianus rufus predation

The die‐off of the long‐spined sea urchin Diadema antillarum in the 1980s highlighted its crucial role as a primary grazer in tropical western Atlantic coral reefs. However, natural recovery has been slow, exacerbated by a new die‐off in 2022. Interest in actively restoring D. antillarum populations has grown with the emergence of culture and rearing techniques. Restocking reefs with laboratory‐reared urchins shows potential for enhancing coral reef resilience by reducing algal cover and promoting coral settlement, but success rates vary. Predation and migration contribute to low retention rates, with distinguishing between them is challenging. In this study near Saba, Caribbean Netherlands, we released 200 laboratory‐reared D. antillarum on a reef and monitored for D. antillarum retention and potential D. antillarum predator presence and interaction for 35 days. Only 40% of the urchins were still present on the reef after day one. The Spanish hogfish Bodianus rufus was identified as the primary daytime predator, responsible for nine direct predation events. No nighttime predation was observed, but interaction with a batwing coral crab Carpilius corallinus was noted. These insights can help optimize future restocking attempts and emphasize the importance of assessing predator presence beforehand. Reefs with high abundances of predators such as Spanish hogfish should be avoided for D antillarum restocking. In addition, before being released, lab‐reared animals should be given time to acclimate to conditions in the wild by being placed in protected in situ cages. Here, they could also grow to larger sizes that are less vulnerable to predation.

Reef refugia in the aftermath of past episodes of global warming

In the face of rising global temperatures, coral reefs experience coral mass bleaching and mortality. Subtropical and mesophotic environments may represent refugia for reef corals under climate change, where they can survive and eventually recolonize degraded areas. Using a comprehensive database of fossil reefs, we empirically assess the efficacy of subtropical, deeper, and turbid mesophotic environments to restore coral reefs after past global warming events. We focus on tropical coral reefs over the last 275 million years and four rapid climate warming events, which coincided with global reef crises in the geological record. In the aftermath of such hyperthermal events, we observed an increase in the proportions of reefs occurring in deeper (blue) mesophotic environments. Additionally, we found a trend of reef distributions and coral shifting towards higher latitudes. The number of coral occurrences in turbid (brown mesophotic) environments also increased after hyperthermal events. Our results suggest that subtropical, blue, and brown mesophotic environments may have served as immediate refugia for shallow-water coral species escaping warming seawater. While the patterns of reef range shifts and the establishment of blue and brown mesophotic refugia following ancient hyperthermal events provide some hope for coral reefs under current climate change, re-establishement of background reef conditions took most times millions of years.Ante el incremento de temperatura global, los arrecifes coralinos están experimentando eventos masivos de blanqueamiento y mortalidad. Los ambientes subtropicales y mesofóticos pueden representar refugios para los corales arrecifales, en los cuales pueden escapar de los efectos del cambio climático, sobrevivir y desde allí recolonizar áreas previamente degradadas. Mediante el uso de una exhaustiva base de datos en arrecifes coralinos, en este estudio se evaluó empíricamente la eficacia de los ambientes subtropicales y mesofóticos, tanto de aguas turbias someras (marrones) como de aguas claras profundas (azules), en la recuperación de arrecifes coralinos después de eventos hipertermales en el pasado. Nuestro enfoque estuvo en los arrecifes coralinos tropicales durante los últimos 275 millones de años y cuatro eventos de calentamiento climático rápido, los cuales coinciden con crisis globales en la ocurrencia de arrecifes en el registro fósil. Como consecuencia de dichos eventos hipertermales, observamos un aumento del número de arrecifes en ambientes mesofóticos de aguas profundas (azules). Además, encontramos una tendencia en la distribución de arrecifes y corales que se desplazan hacia latitudes más altas. También se observó un aumento en el número de corales que estuvieron presentes en ambientes de aguas turbias (marrones) después de dichos eventos hipertermales. Nuestros resultados sugieren que, en el pasado, los ambientes subtropicales, mesofóticos azules y mesofóticos marrones pudieron haber servido como refugios inmediatos para las especies de coral de aguas someras, en los cuales encuentran condiciones atenuantes ante el calentamiento oceánico. Si bien los patrones de desplazamiento de los arrecifes en el rango latitudinal y el establecimiento de refugios mesofóticos de aguas marrones y azules posteriores a eventos hipertermales brindan una luz de esperanza para el futuro de los arrecifes coralinos de cara al cambio climático actual, nuestros resultados evidencian que el restablecimiento de los arrecifes puede tomar millones de años.

Genome-Wide Identification and Expression Analyses of the Thaumatin-Like Protein Gene Family in Tetragonia tetragonoides (Pall.) Kuntze Reveal Their Functions in Abiotic Stress Responses.

Thaumatin-like proteins (TLPs), including osmotins, are multifunctional proteins related to plant biotic and abiotic stress responses. TLPs are often present as large multigene families. Tetragonia tetragonoides (Pall.) Kuntze (Aizoaceae, 2n = 2x = 32), a vegetable used in both food and medicine, is a halophyte that is widely distributed in the coastal areas of the tropics and subtropics. Saline-alkaline soils and drought are two major abiotic stress factors significantly affecting the distribution of tropical coastal plants. The expression of stress resistance genes would help to alleviate the cellular damage caused by abiotic stress factors such as high temperature, salinity-alkalinity, and drought. This study aimed to better understand the functions of TLPs in the natural ecological adaptability of T. tetragonoides to harsh habitats. In the present study, we used bioinformatics approaches to identify 37 TtTLP genes as gene family members in the T. tetragonoides genome, with the purpose of understanding their roles in different developmental processes and the adaptation to harsh growth conditions in tropical coral regions. All of the TtTLPs were irregularly distributed across 32 chromosomes, and these gene family members were examined for conserved motifs of their coding proteins and gene structure. Expression analysis based on RNA sequencing and subsequent qRT-PCR showed that the transcripts of some TtTLPs were decreased or accumulated with tissue specificity, and under environmental stress challenges, multiple TtTLPs exhibited changeable expression patterns at short (2 h), long (48 h), or both stages. The expression pattern changes in TtTLPs provided a more comprehensive overview of this gene family being involved in multiple abiotic stress responses. Furthermore, several TtTLP genes were cloned and functionally identified using the yeast expression system. These findings not only increase our understanding of the role that TLPs play in mediating halophyte adaptation to extreme environments but also improve our knowledge of plant TLP evolution. This study also provides a basis and reference for future research on the roles of plant TLPs in stress tolerance and ecological environment suitability.

Higher genotypic diversity and distinct assembly mechanism of free-living Symbiodiniaceae assemblages than sympatric coral-endosymbiotic assemblages in a tropical coral reef.

While in hospite Symbiodiniaceae dinoflagellates are essential for coral health, ambient free-living counterparts are crucial for coral recruitment and resilience. Comparing free-living and in hospite Symbiodiniaceae communities can potentially provide insights into endosymbiont acquisition and recurrent recruitment in bleaching recovery. In this study, we studied coral-endosymbiotic and ambient free-living Symbiodiniaceae communities in the South China Sea. We collected samples from 183 coral and ambient plankton samples and conducted metabarcoding to investigate the diversity distribution, driving factors, and assembly mechanisms of the two groups of Symbiodiniaceae. Results revealed Cladocopium C1 and Durusdinium D1 as dominant genotypes. We detected a higher genotypic diversity in free-living than in hospite symbiodiniacean communities, but with shared dominant genotypes. This indicates a genetically diverse pool of Symbiodiniaceae available for recruitment by corals. Strikingly, we found that the cooler area had more Symbiodiniaceae thermosensitive genotypes, whereas the warmer area had more Symbiodiniaceae thermotolerant genotypes. Furthermore, in hospite and free-living Symbiodiniaceae communities were similarly affected by environmental factors, but shaped by different assembly mechanisms. The in hospite communities were controlled mainly by deterministic processes, whereas the ambient communities by stochastic processes. This study sheds light on the genetic diversity of source environmental Symbiodiniaceae and differential assembly mechanisms influencing Symbiodiniaceae inside and outside corals.IMPORTANCESymbiodiniaceae dinoflagellates play a pivotal role as key primary producers within coral reef ecosystems. Coral-endosymbiotic Symbiodiniaceae communities have been extensively studied, but relatively little work has been reported on the free-living Symbiodiniaceae community. Conducting a comparative analysis between sympatric coral-endosymbiotic and free-living Symbiodiniaceae communities can potentially enhance the understanding of how endosymbiont communities change in response to changing environments and the mechanisms driving these changes. Our findings shed light on the genetic diversity of source environmental Symbiodiniaceae and differential assembly mechanisms shaping free-living and in hospite Symbiodiniaceae communities, with implications in evaluating the adaptive and resilient capacity of corals in response to future climate change.

Chromolaena odorata affects soil nitrogen transformations and competition in tropical coral islands by altering soil ammonia oxidizing microbes

Invasive plants can change the community structure of soil ammonia-oxidizing microbes, affect the process of soil nitrogen (N) transformation, and gain a competitive advantage. However, the current researches on competition mechanism of Chromolaena odorata have not involved soil nitrogen transformation. In this study, we compared the microbially mediated soil transformations of invasive C. odorata and natives (Pisonia grandis and Scaevola taccada) of tropical coral islands. We assessed how differences in plant biomass and tissue N contents, soil nutrients, N transformation rates, microbial biomass and activity, and diversity and abundance of ammonia oxidizing microbes associated with these species impact their competitiveness. The results showed that C. odorata outcompeted both native species by allocating more proportionally biomass to aboveground parts in response to interspecific competition (12.92 % and 22.72 % more than P. grandis and S. taccada, respectively). Additionally, when C. odorata was planted with native plants, the available N and net mineralization rates in C. odorata rhizosphere soil were higher than in native plants rhizosphere soils. Higher abundance of ammonia-oxidizing bacteria in C. odorata rhizosphere soil confirmed this, being positively correlated with soil N mineralization rates and available N. Our findings help to understand the soil N acquisition and competition strategies of C. odorata, and contribute to improving evaluations and predictions of invasive plant dynamics and their ecological effects in tropical coral islands.

A framework and review of evidence of the importance of coral reefs for marine birds in tropical ecosystems.

As global heating and other anthropogenic influences alter tropical marine environments, it is unclear how marine bird populations will be impacted and whether their current roles in tropical marine ecosystems will change. Although marine birds roost and breed on tropical islands in large numbers, the direct trophic interactions between these birds and their prey across the tropics are poorly documented. We present a first framework for evaluating the dependence on and contributions of marine birds to tropical coral reef ecosystems and use it to examine the evidence for different kinds of interaction, focusing primarily on avian diets. We found 34 publications between 1967 and 2023 that presented a total of 111 data sets with enough detail for quantitative dietary analysis of tropical marine birds. Only two bird species out of 37 (5.4%) had diets of >50% coral reef fishes and only one, the Pacific Reef Egret, appeared to depend almost entirely on reef-based production. Marine birds are also prey for other marine organisms, but insufficient data are available for quantitative analysis. Evidence for indirect effects of birds in tropical marine environments is stronger than for direct dependence on coral reefs, particularly in relation to nutrient concentration and the fertilisation impacts of guano on corals. Dispersal of propagules (e.g. seeds, spores, invertebrate eggs) by bathing, drinking, resting or foraging birds is under-studied and poorly documented. Although the degradation of coral reefs appears unlikely to have a significant direct impact on food availability for most marine bird populations, indirect effects involving marine birds may be disrupted by global environmental change.

Microhabitat acclimatization alters sea anemone-algal symbiosis and thermal tolerance across the intertidal zone.

Contemporary symbioses in extreme environments can give an insight into mechanisms that stabilize species interactions during environmental change. The intertidal sea anemone, Anthopleura elegantissima, engages in a nutritional symbiosis with microalgae similar to tropical coral, but withstands more intense environmental fluctuations during tidal inundations. In this study, we compare baseline symbiotic traits and their sensitivity to thermal stress within and among anemone aggregations across the intertidal using a laboratory-based tank experiment to better understand how fixed genotypic and plastic environmental effects contribute to the successful maintenance of this symbiosis in extreme habitats. High intertidal anemones had lower baseline symbiont-to-host cell ratios under control conditions, but their symbionts had higher baseline photosynthetic efficiency compared to low intertidal anemone symbionts. Symbiont communities were identical across all samples, suggesting that shifts in symbiont density and photosynthetic performance could be an acclimatory mechanism to maintain symbiosis in different environments. Despite lower baseline symbiont-to-host cell ratios, high intertidal anemones maintained greater symbiont-to-host cell ratios under heat stress compared with low intertidal anemones, suggesting greater thermal tolerance of high intertidal holobionts. However, the thermal tolerance of clonal anemones acclimatized to different zones was not explained by tidal height alone, indicating additional environmental variables contribute to physiological differences. Host genotype significantly influenced anemone weight, but only explained a minor proportion of variation among symbiotic traits and their response to thermal stress, further implicating environmental history as the primary driver of holobiont tolerance. These results indicate that this symbiosis is highly plastic and may be able to acclimatize to climate change over ecological timescales, defying the convention that symbiotic organisms are more susceptible to environmental stress.

The AutoSpawner system - Automated ex situ spawning and fertilisation of corals for reef restoration

The restoration of reefs damaged by global and local pressures remains constrained by the scale of intervention currently feasible. Traditional methods for ex situ sexual propagation of corals produce limited materials, typically of limited genetic diversity and only sufficient for small field trials. The development and validation of new technologies to upscale and automate coral propagation is required to achieve logistically and financially feasible reef restoration at ecologically relevant scales. To address the need for upscaled production of genetically diverse material for use in reef restoration we designed an automated system (the AutoSpawner) for harvesting, fertilising and washing gametes from tropical broadcast-spawning corals. The system includes a novel high density dynamic fertilisation process, which enables the production of large numbers of fertilised coral eggs (>7 million per night for highly fecund species) without any downstream negative effects on larval quality. The functionality of the system and the quality of the produced larvae was assessed using multiple species from two coral families (Acroporidae and Merulinidae) across a range of spawning and gamete characteristics. We present the schematics and protocols required for automated sexual propagation of high-quality coral larvae using this novel system; and demonstrate that the time demands, and labour costs, associated with traditional manual-based sexual propagation of corals can be reduced by up to 113-fold using the AutoSpawner.

A dramatic northward range expansion of a Red Sea soft coral in the Mediterranean Sea

AbstractHistorically isolated from tropical influences, the Mediterranean Sea underwent drastic changes, including the Lessepsian migration facilitated by the opening of the Suez Canal, connecting the Red Sea to the Mediterranean Sea. Here, we report on the discovery of a thriving and lush population of an Indo‐Pacific soft coral in the transforming Mediterranean Sea. This species was identified as Dendronephthya hemprichi (Klunzinger, 1877) through morphological and genetic assessments. The unexpected appearance of a dense population of this tropical coral off the Israeli Mediterranean coast signifies a northward range expansion of approximately 350 km from the northern Red Sea. Considering the potential for this soft coral to alter benthic community structure and create new marine animal forests, the population's sudden and massive colonization of artificial structures raises intriguing questions about its possible long‐term ecological implications in the Mediterranean ecosystem. This study emphasizes the urgency of continuous monitoring and research to understand the ecological consequences of this unprecedented abrupt tropical incursion of hundreds of colonies and its potential implications for the region's biodiversity. Moreover, the findings contribute to the broader discourse on the tropicalization of temperate and subtropical regions, highlighting the need to adapt conservation strategies that embrace and understand novel configurations of ecosystems in the face of ongoing local and global changes.

A dynamic subtropical coastal hotspot of benthic foraminifera in the Southeastern Mediterranean indicates early-stage tropicalization

Due to ongoing ocean warming, subtropical environments are becoming accessible to tropical species. Among these environments are the vermetid reefs of the Southeastern Mediterranean (SEM). In the last decades, these valuable coastal habitats witnessed the proliferation of numerous alien species of tropical origin. Among the meiofauna thriving on these reefs are benthic foraminifera, single cell marine organisms that make a significant contribution to global carbonate production. It has been widely recognized that benthic foraminifera, among other invasive species, thrive in the macroalgal cover, and it has been suggested that their populations are becoming a significant new source of sediment substrate. Here, we report on the first systematic assessment of the population size of the benthic foraminifera, allowing a comparison with data from the native tropical habitat of these species. Our study is based on a seasonal sampling of benthic foraminifera from confined sampling areas at four sites along the vermetid reef platforms of the Israeli SEM coast. Our survey reveals a patchy distribution of each species with peak population densities exceeding 100,000 specimens per m2, making the SEM a hotspot of benthic foraminifera, with population densities comparable to tropical coral reef environments. The assemblages of the SEM hotspot are dominated by cosmopolitan foraminiferal taxa and tropical invaders from the Indo-Pacific (e.g., Amphistegina lobifera, Pararotalia calcariformata, soritids, and Hauerina diversa). In contrast to foraminiferal hotspots in the tropics, which are completely dominated by larger symbiont-bearing taxa, the SEM hotspot stands out due to high abundances of non-symbiont-bearing species Textularia agglutinans and small miliolids. An intriguing observation is the significant heterogeneity in composition and density of foraminiferal assemblages between the vermetid reefs' southern and northern areas (Israel), indicating that the productivity of the dominant species are also modulated by local yet unknown environmental factors.

Re(de)fining degree-heating week: coral bleaching variability necessitates regional and temporal optimization of global forecast model stress metrics

Tropical coral reefs are a critical ecosystem in global peril as a result of anthropogenic climate change, and effective conservation efforts require reliable methods for identifying and predicting coral bleaching events. To this end, temperature threshold-based models such as the National Oceanic and Atmospheric Administration’s (NOAA) degree-heating week (DHW) metric are useful for forecasting coral bleaching as a function of heat stress accumulation. DHW does not adequately account for regional variation in coral stress responses, however, and the current definition consistently underpredicts coral bleaching occurrence. Using a weather forecasting skill-based framework, our analysis cross-tested 1080 variations of the DHW-based bleaching occurrence (presence/absence) model against 22 years of contemporary coral bleaching observations (1998–2019) in order to optimize bleaching forecast skill at different levels of geographic specificity. On a global basis and relative to the current definition, reducing the current 1 °C warming cutoff to 0.4 °C, adjusting the accumulation window to 11 weeks, and defining a bleaching threshold of 3 DHW improved forecast skill by 70%. Allowing our new DHW definitions to vary across regions and ocean basins further doubled model skill. Our results also suggest that the most effective bleaching forecast models change over time as coral reef systems respond to a shifting climate. Since 1998, the coral bleaching threshold for the globally optimized forecast model has risen at a significant rate of 0.19 DHW/year, matching the pace of ocean warming. The bleaching threshold trajectory for each ocean basin varies. Though further work is necessary to parse the mechanism behind this trend, the dynamic nature of coral stress responses demands that our forecasting tools be continuously refined if they are to adequately inform marine conservation efforts.

B(OH)4− and CO32− do not compete for incorporation into aragonite in synthetic precipitations at pHtotal 8.20 and 8.41 but do compete at pHtotal 8.59

Coral skeletal B/Ca (effectively B/CO32–), in combination with boron isotopic composition (δ11B), has been used to reconstruct the dissolved inorganic carbon chemistry of coral calcification media and to explore the biomineralisation process and its response to ocean acidification. This approach assumes that B(OH)4−, the B species incorporated into aragonite, competes with dissolved inorganic carbon species for inclusion in the mineral lattice. In this study we precipitated aragonite from seawater in vitro under conditions that simulate the compositions of the calcification media used to build tropical coral skeletons. To deconvolve the effects of pH and [CO32–] on boron incorporation we conducted multiple experiments at constant [CO32–] but variable pH and at constant pH but variable [CO32–], both in the absence and presence of common coral skeletal amino acids. Large changes in solution [CO32–], from < 400 to >1000 µmol kg−1, or in precipitation rate, have no significant effect on aragonite B/Ca at pHtotal of 8.20 and 8.41. A significant inverse relationship is observed between solution [CO32–] and aragonite B/Ca at pHtotal = 8.59. Aragonite B/Ca is positively correlated with seawater pH across precipitations conducted at multiple pH but this relationship is driven by the effect of pH on the abundance of B(OH)4– in seawater. Glutamic acid and glycine enhance the incorporation of B in aragonite but aspartic acid has no measurable effect. Normalising aragonite B/Ca to solution [B(OH)4–] creates KDB(OH)4− which do not vary significantly between pH treatments. This implies that B(OH)4– and CO32– do not compete with each other for inclusion in the aragonite lattice at pHtotal 8.20 and 8.41. Only at high pH (8.59), when [B(OH)4–] is high, do we observe evidence to suggest that the 2 anions compete to be incorporated into the lattice. These high pH conditions represent the uppermost limits reliably measured in the calcification media of tropical corals cultured under present day conditions, suggesting that skeletal B/Ca may not reflect the calcification media dissolved inorganic carbon chemistry in all modern day corals.

Latitudinal variation in thermal performance of the common coral Pocillopora spp.

Understanding how tropical corals respond to temperatures is important to evaluating their capacity to persist in a warmer future. We studied the common Pacific coral Pocillopora over 44° of latitude, and used populations at three islands with different thermal regimes to compare their responses to temperature using thermal performance curves (TPCs) for respiration and gross photosynthesis. Corals were sampled in the local autumn from Moorea, Guam and Okinawa, where mean±s.d. annual seawater temperature is 28.0±0.9°C, 28.9±0.7°C and 25.1±3.4°C, respectively. TPCs for respiration were similar among latitudes, the thermal optimum (Topt) was above the local maximum temperature at all three islands, and maximum respiration was lowest at Okinawa. TPCs for gross photosynthesis were wider, implying greater thermal eurytopy, with a higher Topt in Moorea versus Guam and Okinawa. Topt was above the maximum temperature in Moorea, but was similar to daily temperatures over 13% of the year in Okinawa and 53% of the year in Guam. There was greater annual variation in daily temperatures in Okinawa than Guam or Moorea, which translated to large variation in the supply of metabolic energy and photosynthetically fixed carbon at higher latitudes. Despite these trends, the differences in TPCs for Pocillopora spp. were not profoundly different across latitudes, reducing the likelihood that populations of these corals could better match their phenotypes to future more extreme temperatures through migration. Any such response would place a premium on high metabolic plasticity and tolerance of large seasonal variations in energy budgets.