Tropical Agricultural Soils Research Articles

Dissipation of the insecticide profenofos in tropical agricultural soils (Berambadi catchment, South India): Insight from compound-specific isotope analysis (CSIA).

Assessing the role of agricultural lands in pesticide contamination of water ecosystems is critical for water management agencies and policymakers when formulating effective mitigation strategies. Current approaches based on concentration measurements are often insufficient to evaluate the contribution of pesticide dissipation processes in complex agroecosystems. This study focuses on the dissipation of profenofos insecticide within plots subject to intensive agriculture in the Berambadi watershed (India). We examined profenofos dissipation kinetics and related carbon isotopic fractionation in laboratory volatilisation, hydrolysis, photolysis and soil biodegradation experiments, and in a field plot experiment. Process-specific isotope fractionation analyses revealed significant carbon isotope fractionation, with εC = - 2.0 ± 0.8 ‰ during UV photolysis, and εC = - 0.9 ± 0.4 ‰ during biodegradation of profenofos in the soil. Accordingly, the formation of 4-bromo-2-chlorophenol and another profenofos transformation product indicated the cleavage of OP and CBr bonds in soil experiments. By integrating dissipation kinetics, compound-specific isotope analysis (CSIA), transformation products analysis and modelling results, biodegradation was identified as the dominant dissipation process in the agricultural plot, accounting for > 90 % of profenofos dissipation. Model predictions were consistent with the observed dissipation kinetics and isotopic data, confirming the fast degradation (T1/2 = 1.1 ± 0.6 day) and low (< 0.02 %) leaching potential of profenofos, which was not detected in the local groundwater monitored by passive samplers (POCIS). Overall, these results highlight the usefulness of profenofos CSIA to identify and unravel dissipation processes in tropical agroecosystems for improving contamination risk assessment.

Pesticide residues in tropical agricultural soils: Distribution, seasonality, and earthworm ecological risk

Soil contamination by pesticide residues is associated with agricultural intensification in tropical regions and endangers human health and the environment. A mixture of pesticide residues and their degradation products persist in agricultural soils and represent a risk to soil organisms. In this study, we aimed to investigate the concentration and distribution of organochlorine (OC) and organophosphate (OP) pesticide residues in agricultural soils where the industrial cultivation of maize and soybeans is intensively carried out, at three depths (0–5, 5–15, and 15–30 cm) and during two seasons (rainy and dry). Likewise, we performed the ecological risk assessment of those found pesticide residues on two earthworm species, Eisena fetida, and Aporrectoda calagionsa. We calculated the Toxicity-Exposure Ratio (TER) using Predicted no Effect Concentrations (PNEC) and measured concentrations in soils, for identifying the risk of pesticide residues separately. The Risk Quotient (RQ) method was used to evaluate the ecological risk of pesticide residue mixtures in soils from each cropping system. Endrin ketone and dieldrin were the pesticide residues with the highest frequency of detection. The highest concentration in the study was found in a soil sample from maize crops in the dry season at 15–30 cm depth (2917 ng/g). The pesticide mixture from soil samples belonging to maize (0–5 cm) and soybean (5–15 cm) crops in dry season posed the highest ecological risk for A. caliginosa with 100 %, and a maximum RQ of 82.2. Endrin ketone is the OC that contributed most to the overall toxicity of the pesticide mixture in soil samples from maize crop and dieldrin in soil samples from soybean crop. Among OP, disulfoton contributed most to RQsite in soybean crop and methyl parathion in maize crop. Results pointed out the need to apply alternatives to remediate obsolete pesticide residues and restrict the use of methyl parathion and disulfoton in maize and soybean crops, to reduce the ecological risk that represent for earthworms.

In-field carbon dioxide removal via weathering of crushed basalt applied to acidic tropical agricultural soil

Enhanced weathering (EW) of silicate rocks such as basalt provides a potential carbon dioxide removal (CDR) technology for combatting climate change. Modelling and mesocosm studies suggest significant CDR via EW but there are few field studies. This study aimed to directly measure in-field CDR via EW of basalt applied to sugarcane on acidic (pH 5.8, 0–0.25 m) Ultisol in tropical northeastern Australia, where weathering potential is high. Coarsely crushed basalt produced as a byproduct of gravel manufacture (<5 mm) was applied annually from 2018 to 2022 at 0 or 50 t ha−1 a−1, incorporated into the soil in 2018 but not in subsequent years. Measurements in 2022 show increased soil pH and extractable Mg and Si at 0–0.25 m depth, indicating significant weathering of the basalt, but showed no increase in crop yield. Soil inorganic carbon content and bicarbonate (HCO3−) flux to deep drainage (1.25 m depth) were measured to quantify CDR in the 2022–2023 wet season (i.e. one year). Soil inorganic carbon was below detection limits. Mean HCO3− flux was 3.15 kmol ha−1 a−1 (±0.40) in the basalt-treated plots and 2.56 kmol ha−1 a−1 (±0.18) in the untreated plots but the difference (0.59 kmol ha−1 a−1 or 0.026 t CO2 ha−1 a−1) was not significant (p = 0.082). Most weathering of the basalt was attributed to acids stronger than carbonic acid. These were, in decreasing order of contribution, surface-bound protons (inherent soil acidity), nitric acid (from nitrification), organic acids, and acids associated with cation uptake by plants. These results indicate in-field CDR via EW of basalt is low where soil and regolith pH is well below the pKa1 of 6.4 for H2CO3. However, increased soil pH, and the consumption of strong acids by weathering will eventually lead to reduced CO2 emission from soil or evasion from rivers, with continued basalt addition.

Effects of Microplastics on Soil N2O Emission and Nitrogen Transformations from Tropical Agricultural Soils

A widespread concern had been there regarding soil ecological and environmental problems caused by microplastic pollution in agricultural soils. A controlled laboratory incubation experiment was performed to examine the effects of different types of microplastics on soil properties, N2O emissions, and nitrogen （N） transformations in tropical arable soils from a pepper-corn cropping system in Hainan Province. Three treatments were done： soil without microplastics （CK） and soil amended with 5% of polyethylene （PE） or with 5% of polybutylene adipate co-terephthalate （PBAT）. The results showed that both types of microplastic addition increased soil pH, soil organic carbon （SOC）, and dissolved organic carbon （DOC） contents, with stronger treatment effects observed for PBAT than those for the PE treatment. In addition, the PE and PBAT treatments increased soil ammonium nitrogen （NH4+-N） contents by 66.07% and 119.65% and decreased nitrate nitrogen （NO3--N） contents by 8.56% and 29.68%, respectively. Compared to those in the CK treatment, the addition of PBAT significantly increased soil N2O emissions by 254.92% （P < 0.05）, whereas that of PE produced no significant effects. Furthermore, both the PE and PBAT treatments increased soil net nitrogen mineralization rate （NMR） and decreased soil net nitrification rate （NNR）, with more obvious treatment effects observed in PBAT than in the PE treatment. PBAT addition increased the abundance of ureC, while PE had no significant effects. Microplastic addition reduced the abundance of nitrifying gene abundances （AOA-amoA, AOB-amoA, and nxrA）, with more obvious treatment effects found in the PBAT treatment. Further, PBAT addition significantly increased the gene abundances of nirK, nirS, nosZ, and fungal nirK （P < 0.05）, whereas the addition of PE had no significant effect on those gene abundances. Soil N2O emissions had positive relationships with NH4+-N intensity, pH, DOC, SOC, and nirS abundance. In conclusion, biodegradable microplastics addition produced stronger influences on soil properties and N transformations than the non-biodegradable one in tropical arable soils and aggravated soil N2O emissions mainly by promoting denitrification.

Biogas slurry-derived dissolved organic matter inhibited oxytetracycline adsorption by tropical agricultural soils

The increasing presence of oxytetracycline (OTC) in agricultural soils has raised global environmental concerns. We investigated the environmental behavior and fate of OTC in two types of tropical agricultural soils, focusing on the impact of dissolved organic matter (DOM) from biogas slurry. Techniques such as three-dimensional excitation-emission matrix fluorescence spectroscopy (3D-EEM), Fourier Transform Infrared (FTIR), X-ray photoelectron spectroscopy (XPS), and Ultraviolet-visible spectrophotometer (UV–vis) were used to explore the adsorption mechanisms. Our findings revealed that biogas slurry-derived DOM decreased the OTC adsorption on soils and extended the time to reach adsorption equilibrium. Specifically, the equilibrium adsorption of OTC by the two soils decreased by 19.41 and 15.32 %, respectively. These adsorption processes were effectively modelled by Elovich, intraparticle diffusion, linear, and Freundlich thermodynamic models. Thermodynamic parameters suggested that OTC adsorption onto soils was spontaneous and endothermic, with competitive interactions between biogas slurry-derived DOM and OTC molecules intensifying at higher DOM concentrations. The adsorption mechanisms were governed by both physical and chemical processes. Furthermore, the presence of Ca2+ and Na+ ions significantly inhibited OTC adsorption. These insights advanced our understanding of the fate and risk of OTC in soil environments influenced by DOM, contributing to more informed agricultural and environmental management practices.

PBAT microplastics exacerbates N2O emissions from tropical latosols mainly via stimulating denitrification

Biodegradable plastic mulching films are regarded as promising substitutes for their non-degradable counterparts to ameliorate serious plastic pollution in agriculture. Inevitably, biodegradable microplastics (BMs) can be formed and profoundly affect the function of soil ecosystems. However, little is known about the effects of BMs loading on soil nitrogen (N) dynamics and loss in tropical agricultural soils. Hereby, a 120-day soil incubation trial was performed to evaluate the effects of polybutylene adipate co-terephthalate (PBAT) microplastics on nitrous oxide (N2O) emissions, N transformation, and bacterial community structure in latosols. The results showed that PBAT addition raised soil ammonium nitrogen (NH4+–N) and dissolved organic carbon (DOC) contents, but lowered nitrate nitrogen (NO3––N) contents, accompanied with a smaller potential nitrification rate and a greater potential denitrification rate. The microbial biomass nitrogen and nrfA gene abundance were increased by PBAT, suggesting the processes of microbial N immobilization and dissimilatory nitrate reduction to ammonia were largely promoted. Positive correlations existed between N2O emissions and denitrification-related enzymatic activities and functional gene abundances (narG, nirK/S and Fungal nirK). PBAT amendment stimulated N2O emissions by 54.8 − 317.3 %, accompanied with increased values of those denitrification-related parameters, suggesting that stimulated denitrification was responsible for the exacerbated N2O emissions. Moreover, PBAT addition changed bacterial alpha diversity and bacterial community composition, where the relative abundances of Proteobacteria increased while those of Nitrospirae and Acidobacteria decreased. These findings are beneficial to understanding the fate of N in microplastics-polluted soil, which will provide a new insight into the impact of BMs on soil functions and environmental risks.

Biogeochemistry of dissolved organic matter and inorganic solutes in soil profiles of tropical pasturelands

Tropical soils play a critical role in the global biogeochemical cycles and are essential for maintaining the Earth's carbon balance. Understanding the dynamics of dissolved organic matter (DOM) is paramount due to its implications for ecosystem functioning and nutrient cycling. This study comprehensively evaluated the origin, distribution, and composition of DOM and inorganic solutes in Brazilian tropical agricultural soils. Multiple analytical techniques were utilized to assess DOM from soil profiles (0–100 cm depth) across a spectrum of land uses, including a native Atlantic Forest, a degraded pasture, as well as intensive grazing, extensive grazing, and silvopastoral systems. Inorganic elements were quantified to assess the coupling between the organic and inorganic biogeochemical cycles. The dominance of C4 carbon in topsoil layers suggested substantial contributions of organic matter from grasses to the soil organic matter pool. However, with increased depth, C3 carbon inputs became more prominent, indicating the influence of forest vegetation that existed prior to the implementation of agricultural managements. DOM concentrations decreased with soil depth due to reduced carbon inputs, sorption to minerals, or oxidation. DOM composition did not show significant changes among different land use and managements. Lignin was identified as the primary contributor to oxidized DOM with increasing soil depth. The composition of DOM exhibited a shift from more aromatic and higher molecular weight compounds in topsoil layers to smaller, more aliphatic compounds in subsoil layers. Our key findings revealed that aliphatic compounds, particularly fatty acids, tend to accumulate in deeper soil layers. This phenomenon was consistent in pastures dominated by grasses but not in soils near treed vegetation. Overseeding (from C3 plants) did not significantly impact DOM compositions, emphasizing the persistence of C4 plants in these systems. The presence of inorganic elements in soil water extracts showed minimal impact on DOM dynamics, suggesting decoupled organic and inorganic biogeochemical cycles in tropical pasturelands.

Occurrence and characteristics of microplastics pollution in tropical agricultural soils in Klang Valley, Malaysia.

Presently, microplastic pollution has emerged as a growing environmental risk around the world. Nevertheless, knowledge of the occurrence and characteristics of microplastics in tropical agricultural soil is limited. This study investigated the pollution of surface soil microplastics in two agricultural farms located at Klang Valley, Malaysia. An extraction method based on density separation by using saturated extraction solution (sodium sulfate, ρ = 2 g cm-3 and sucrose, ρ = 1.59 g cm-3 with a ratio 1:1, v/v) was carried out. The study revealed the mean particle size of soil microplastics with 3260.76 ± 880.38 μm in farm A and 2822.31 ± 408.48 μm in farm B. The dominant types of soil microplastics were fragments and films with major colors of white (59%) and transparent (28%) in farm A, while black (52%) and white (37.6%) in farm B. Representatives of soil microplastics detected polymers of polyvinyl chloride (PVC), high density polyethylene (HDPE), polycarbonate (PC), and polystyrene (PS). The sources of plastic products were black and white plastic pipes, black plastic films for vegetation, fertilizer bottles, plastic water containers and polystyrene storage boxes, and the breakdown processes, contributed to the microplastic pollution in these farms. The outcomes of this study will establish a better understanding of microplastic pollution in tropical agricultural soil in the Southeast Asian region. The findings would be beneficial as supportive reference for the endeavor to reduce microplastic pollution in agricultural soil.

Mechanistic insights into mitigating N2O emissions by the nitrification inhibitor dicyandiamide (DCD) in a tropical sandy soil after six years of manure amendment

Organic amendments (OM) can profoundly affect soil nitrous oxide (N2O) emissions via changing nitrogen (N) cycles. However, mechanistic insights into how nitrification inhibitors modulate the responses of soil N2O emissions to successive application of OM are currently lacking. In this study, we performed a laboratory-scale experiment to examine N2O emissions from tropical vegetable soils subjected to six years of chemical fertilization (CF) or chemical fertilization combined with manure application (CFM), and further evaluated the mitigation effectiveness of the nitrification inhibitor dicyandiamide (DCD) under each management regime. Isotopocule mapping (δ15NSPN2O and δ18ON2O/H2O map) showed bacterial nitrification/fungal denitrification contributed 77.4%–88.5% of total N2O production among treatments during the emission peak. The cumulative N2O emissions from the CFM-treated soils were nearly 8-fold of those from the CF-treated soils. CFM stimulated N2O production from bacterial nitrification and denitrification by increasing the abundance of genes linked to nitrifers (AOB and comammox) and denitrifiers (nirK/S and qnorB), respectively. Moreover, DCD decreased cumulative N2O emissions by averagely 73.3%, with better mitigation performance observed in the CFM treatment due to stronger inhibited nitrification and increased abundance of nosZ, and altered bacterial community composition. The 16S sequencing further revealed that adding DCD to CFM-treated soils resulted in declines in abundance of bacterial phylum Actinobacteria and Chloroflexi that positively affected N2O emissions; while the opposite pattern prevailed for Gemmatimonadetes that negatively affected N2O emissions. This study highlights manure application coupled with nitrification inhibitors can achieve the dual goals of enhancing soil fertility while reducing environment risk in tropical agricultural soils.

Health assessment based on exposure to microplastics in tropical agricultural soil

Microplastic (MP) pollution of agricultural soils has caused global alarm over its widespread distribution and potential risks to terrestrial ecosystems and human health. This study assessed human health based on exposure to soil MPs through a comprehensive investigation of the factors influencing their occurrence and spatial distribution on Hainan Island, South China. The results showed that the abundance of soil MPs was 1128.6 ± 391.5 items·kg−1, whereas the normalized abundance of MPs based on using a power-law function was 19,261.4 items·kg−1. Regarding the extent of population exposure to agricultural soil MPs, the average daily exposure dose (pADD) model revealed that using mass as an indicator to assess the health risks associated with MP intake is more reliable than using abundance. However, abundance-based exposure assessments are also relevant because MPs with smaller particle sizes are more harmful to human health. Moreover, for adults, the normalized pADD values based on abundance and mass were 1.68E-02 item MPs·kg BW−1·d−1 and 7.23E-02 mg MPs·kg BW−1·d−1, respectively. Although the multidimensionality of MPs should be further aligned and quantified, the preliminary findings of this study contribute to the development of human health risk assessment frameworks for soil MPs.

Depletion of hydrocarbons and concomitant shift in bacterial community structure of a diesel-spiked tropical agricultural soil

ABSTRACT Bacterial community of a diesel-spiked agricultural soil was monitored over a 42-day period using the metagenomic approach in order to gain insight into key phylotypes impacted by diesel contamination and be able to predict end point of bioattenuation. Soil physico-chemical parameters showed significant differences (P < 0.05) between the Polluted Soil (PS) and the Unpolluted control (US)across time points. After 21 days, the diesel content decreased by 27.39%, and at the end of 42 days, by 57.11%. Aromatics such as benzene, anthanthrene, propylbenzene, phenanthrenequinone, anthraquinone, and phenanthridine were degraded to non-detected levels within 42 days, while some medium range alkanes and polyaromatics such as acenaphthylene, naphthalene, and anthracene showed significant levels of degradation. After 21 days (LASTD21), there was a massive enrichment of the phylum Proteobacteria (72.94%), a slight decrease in the abundance of phylum Actinobacteriota (12.74%), and > 500% decrease in the abundance of the phylum Acidobacteriodota (5.26%). Day 42 (LASTD42) saw establishment of the dominance of the Proteobacteria (34.95%), Actinobacteriota, (21.71%), and Firmicutes (32.14%), and decimation of phyla such as Gemmatimonadota, Planctomycetota, and Verrucromicrobiota which play important roles in the cycling of elements and soil health. Principal component analysis showed that in PS moisture contents, phosphorus, nitrogen, organic carbon, had greater impacts on the community structure in LASTD21, while acidity, potassium, sodium, calcium and magnesium impacted the control sample. Recovery time of the soil based on the residual hydrocarbons at Day 42 was estimated to be 229.112 d. Thus, additional biostimulation may be required to achieve cleanup within one growing season.

Fate of silicon in tropical agricultural soil clays using XANES spectroscopy

Silicon (Si) is an abundant element in terrestrial ecosystems and makes essential contributions to agricultural crops, environments, and industries; however, current knowledge of Si speciation in soil systems is based primarily on crystalline mineral types with limited information about the effect of Si-adsorbed species on the most chemically reactive clay fraction. Herein, we investigated Si speciation in the clay-sized fraction of tropical soils. Silicon K-edge X-ray absorption near edge structure (XANES) spectra of clay samples, together with a wide range of reference compounds varying in clay and Fe/Al oxide mineralogy, showed the predominance of Si in a beidellite structure and of Si adsorbed to montmorillonite and to kaolinite. Unique features, including a pre-white-line feature, white-line position and intensity, and post-edge numbers and positions of Si reference spectra, could differentiate most Si reference standard spectra. Silicon adsorbed to goethite, Si-ferrihydrite-natural organic matter complexes, and Si in the structure of biotite, illite-smectite, chlorite, quartz, and Si nanoparticle, variously occurred in different samples. The CaCl2 extraction data revealed that extracted Si was below the limits of Si deficiency in one-half of the total soil samples and accounted for only 0.02% of total soil Si. Soil extractable Si had a positive correlation with pH, organic matter, and clay. Our results present a novel application of Si K-edge XANES as a tool for identifying Si speciation in natural clays that are the most chemically reactive phase of Si retention and release in terrestrial and aquatic systems.

Bacillus Composted Paddy Husk as a Plant Nutrient Source to Promote Vegetative Growth and Nutrient Uptake in Maize

Paddy husk (PH) is a waste generated from rice production that can be composted into organic fertiliser. Ligninolytic active Bacillus spp. from termite gut were added during the composting process to enhance the agronomic properties of compost produced from PH. This pot study was conducted using maize (Thai Super Sweet hybrid F1) as a test crop to determine the effects of using Bacillus composted PH in supplementing essential nutrients when used in tropical agricultural soil. A total of 144 planting pots, consisting of 12 treatments, were arranged in a Randomized Complete Block Design (RCBD) with three blocks, three replications and four sub-samples per replication. Maize growth namely plant height and leave number were recorded from 14 until 48 days after planting. Maize plants were harvested at 48 days after planting (tasseling stage) and total plant dry weights were recorded. Each plant part was ground and analysed for total N, P, K, Mg and Ca. Soil samples from the pots were sampled and analysed for TOC, pH, EC, total N, total P, available P, K, Mg and Ca. The results at 48 days after planting showed that Bacillus composted PH contributed to an increased by 24.29 to 31.67% in plant height, 53.84 to 61.61% in total plant dry weight and 9.09 to 16.67% in leaf number when compared to plants supplied with standard fertiliser. The use of Bacillus composted PH also improved soil pH, increased soil total N, total P, exchangeable K, Ca, and Mg. Maize treated with Bacillus composted PH showed higher nutrient uptake by 42.79 to 67.89% N, 30.05 to 56.25% P, 61.39 to 70.34% K, 47.39 to 69.94% Ca, and 76.62 to 83.74% Mg when compared to maize treated with standard fertiliser. This study suggests that Bacillus composted PH can promote vegetative growth in maize by acting as soil amendment and providing sufficient nutrients to the plant. Therefore, Bacillus composted PH has great potentials in promoting a more environmentally friendly and sustainable cropping practices which can benefit the environment and society.

Chromium contamination accentuates changes in the microbiome and heavy metal resistome of a tropical agricultural soil.

The impacts of hexavalent chromium (Cr) contamination on the microbiome, soil physicochemistry, and heavy metal resistome of a tropical agricultural soil were evaluated for 6 weeks in field-moist microcosms consisting of a Cr-inundated agricultural soil (SL9) and an untreated control (SL7). The physicochemistry of the two microcosms revealed a diminution in the total organic matter content and a significant dip in macronutrients phosphorus, potassium, and nitrogen concentration in the SL9 microcosm. Heavy metals analysis revealed the detection of seven heavy metals (Zn, Cu, Fe, Cd, Se, Pb, Cr) in the agricultural soil (SL7), whose concentrations drastically reduced in the SL9 microcosm. Illumina shotgun sequencing of the DNA extracted from the two microcosms showed the preponderance of the phyla, classes, genera, and species of Actinobacteria (33.11%), Actinobacteria_class (38.20%), Candidatus Saccharimonas (11.67%), and Candidatus Saccharimonas aalborgensis (19.70%) in SL7, and Proteobacteria (47.52%), Betaproteobacteria (22.88%), Staphylococcus (16.18%), Staphylococcus aureus (9.76%) in SL9, respectively. Functional annotation of the two metagenomes for heavy metal resistance genes revealed diverse heavy metal resistomes involved in the uptake, transport, efflux, and detoxification of various heavy metals. It also revealed the exclusive detection in SL9 metagenome of resistance genes for chromium (chrB, chrF, chrR, nfsA, yieF), cadmium (czcB/czrB, czcD), and iron (fbpB, yqjH, rcnA, fetB, bfrA, fecE) not annotated in SL7 metagenome. The findings from this study revealed that Cr contamination induces significant shifts in the soil microbiome and heavy metal resistome, alters the soil physicochemistry, and facilitates the loss of prominent members of the microbiome not adapted to Cr stress.

Implications of vermicompost on antibiotic resistance in tropical agricultural soils – A study in Hainan Island, China

The contamination of antibiotic resistance genes (ARGs) associated with animal manure fertilization have attracted a global concern. Vermicompost has been widely popularized as an eco-friendly alternative to recycle animal manure on Hainan Island, China. However, the effects of vermicompost application on ARG spread and environmental fate in tropical agricultural soils remains undefined. Herein, the spatial prevalence and vertical behavior of ARGs in the soil profiles of vermicompost-applied agricultural regions were explored by a large-scale survey across Hainan Island. The results showed that although vermicompost application marginally enhanced the load of ARG pollution in the soil in Hainan, the ARGs derived from vermicompost did not eventually accumulate in the soil profile. The increase rate of ARGs in 40–60 cm soil layer was only 0.0015 % compared with that of unfertilized soil. Interestingly, vermicompost application reduced the abundance of high-risk ARGs, such as blaNDM and blaampC, by approximately one order of magnitude. Vermicompost was also observed to increase the abundance of beneficial bacteria, like Clostridium, and decrease those of Acidobacteriae, Planctomycetes and Verrucomicrobiae, which caused changes in the potential host bacteria of soil ARGs. Mobile genetic elements were further proven to be an essential factor that regulated the vertical dynamics of ARGs in vermicomposted soil, with a direct influence coefficient of 0.9975. This study demonstrated that the controllable risk associated with vermicompost application provided useful information to effectively reduce the threat of ARGs and promote the development of sustainable agriculture on Hainan Island.

Improving fertilizer response of crop yield through liming and targeting to landscape positions in tropical agricultural soils

Nutrient management research was conducted across locations to investigate the influence of landscape position (hill, mid-, and foot slope) in teff (Eragrostis tef) and wheat (Triticum aestivum) yield response to fertilizer application and liming in the 2018 and 2019 cropping seasons. The treatments included 1) NPS fertilizer as a control treatment (42 N + 10P + 4.2S kg ha−1 for teff and 65 N + 20P + 8.5S kg ha−1 for wheat); 2) NPS and potassium (73 N + 17P + 7.2S + 24 K kg ha−1 for teff and 103 N + 30P + 12.7S + 24 K kg ha−1 for wheat) and 3) NPSK and zinc (73 N + 17P + 7.2S + 24K + 5.3Zn kg ha−1 for teff and 103 N + 30P + 12.7S + 24K + 5,3Zn kg ha−1 for wheat) in acid soils with and without liming. Results showed that the highest teff and wheat grain yields of 1512 and 4252 kg ha−1 were obtained at the foot slope position, with the respective yield increments of 71% and 57% over the hillslope position. Yield response to fertilizer application significantly decreased with increasing slope owing to the decrease in soil organic carbon and soil water content and the increase in soil acidity. The application of lime with NPSK and NPSKZn fertilizer increased teff and wheat yields by 43–54% and 32–35%, respectively compared to the application of NPS fertilizer without liming where yield increments were associated with the application of N and P nutrients. Orthogonal contrasts revealed that landscape position, fertilizer application, and their interaction effects were significant on teff and wheat yields. Soil properties including soil pH, organic carbon, total N, and soil water content were increased down the slope, which might be attributed to sedimentation down the slope. However, available P is yet very low both in acidic and non-acidic soils. We conclude that crop response to applied nutrients could be enhanced by targeting nutrient management practices to agricultural landscape features and addressing other yield-limiting factors such as soil acidity and nutrient availability by conducting further research.

A review of the enhanced degradation of pesticides in tropical agricultural soils

Pesticides newly introduced into the soil are normally poorly degraded by native soil microbes. However, studies have demonstrated that repeated exposure of pesticides to soil microbes potentially enhances their biodegradation through selective enrichment of pesticide-metabolising microorganisms, particularly when the compound is used as a carbon (C) or nitrogen (N) and energy source. Enhanced degradation of recalcitrant compounds in soil has a significant environmental impact, as the chemicals are less likely to contaminate environmental ecosystems. The authors have undertaken several studies to isolate these adapted microbes that rapidly degrade chemicals hitherto known to be recalcitrant in soil. These microbes could potentially be used for bioremediation (bioaugmentation). In addition, other studies have shown their potential to remove pesticide contamination from the environment by the use of organic materials locally generated as organic amendments (biostimulation). In this review, the various methods used in the course of the authors’ studies in determining the utilisation of selected chemicals (pesticides) by adapted microbes as a source of carbon and nitrogen for growth and energy are discussed. This review also presents some of the compounds that the authors have worked with and the successes registered in isolating key degraders of the respective pesticides and the extent to which the locally generated organic materials are able to enhance the degradation of the respective chemicals in soil.

Temporal assessment of N-cycle microbial functions in a tropical agricultural soil using gene co-occurrence networks.

Microbial nitrogen (N) cycling pathways are largely responsible for producing forms of N that are available for plant uptake or lost from the system as gas or leachate. The temporal dynamics of microbial N pathways in tropical agroecosystems are not well defined, even though they are critical to understanding the potential impact of soil conservation strategies. We aimed to 1) characterize temporal changes in functional gene associations across a seasonal gradient, 2) identify keystone genes that play a central role in connecting N cycle functions, and 3) detect gene co-occurrences that remained stable over time. Soil samples (n = 335) were collected from two replicated field trials in Rwanda between September 2020 and March 2021. We found high variability among N-cycle gene relationships and network properties that was driven more by sampling timepoint than by location. Two nitrification gene targets, hydroxylamine oxidoreductase and nitrite oxidoreductase, co-occurred across all timepoints, indicating that they may be ideal year-round targets to limit nitrification in rainfed agricultural soils. We also found that gene keystoneness varied across time, suggesting that management practices to enhance N-cycle functions such as the application of nitrification inhibitors could be adapted to seasonal conditions. Our results mark an important first step in employing gene networks to infer function in soil biogeochemical cycles, using a tropical seasonal gradient as a model system.

Edaphic controls of soil organic carbon in tropical agricultural landscapes

Predicting soil organic carbon (SOC) is problematic in tropical soils because mechanisms of SOC (de)stabilization are not resolved. We aimed to identify such storage mechanisms in a tropical soil landscape constrained by 100 years of similar soil inputs and agricultural disturbance under the production of sugarcane, a C4 grass and bioenergy feedstock. We measured soil physicochemical parameters, SOC concentration, and SOC dynamics by soil horizon to one meter to identify soil parameters that can predict SOC outcomes. Applying correlative analyses, linear mixed model (LMM) regression, model selection by AICc, and hierarchical clustering we found that slow moving SOC was related to many soil parameters, while the fastest moving SOC was only related to soil surface charge. Our models explained 78–79%, 51–57%, 7–8% of variance in SOC concentration, slow pool decay, and fast pool decay, respectively. Top SOC predictors were roots, the ratio of organo-complexed iron (Fe) to aluminum (Al), water stable aggregates (WSagg), and cation exchange capacity (CEC). Using hierarchical clustering we also assessed SOC predictors across gradients of depth and rainfall with strong reductions in Roots, SOC, and slow pool decay associated with increasing depth, while increased rainfall was associated with increased Clay and WSagg and reduced CEC in surface soils. Increased negative surface charge, water stable aggregation, organo-Fe complexation, and root inputs were key SOC protection mechanisms despite high soil disturbance. Further development of these relationships is expected to improve understanding of SOC storage mechanisms and outcomes in similar tropical agricultural soils globally.

Synergistically mitigating nitric oxide emission by co-applications of biochar and nitrification inhibitor in a tropical agricultural soil

Agricultural soils are the hotspots of nitric oxide (NO) emissions, which are related to atmospheric pollution and greenhouse effect. Biochar application has been recommended as an important countermeasure, however, its mitigation efficiency is limited as biochar, under certain conditions, can stimulate soil nitrification. Therefore, biochar co-applied with nitrification inhibitor could optimize the mitigation potential of biochar. Herein, a laboratory-scale experiment was conducted to investigate the effects of co-application of biochar and nitrification inhibitor on NO emission, nitrogen cycling function and bacterial community in a tropical vegetable soil. Results showed that a single application of biochar or nitrification inhibitor significantly decreased NO emissions, and this mitigation effectiveness was amplified by their co-applications. Soil NO2−−N intensity, along with abundances of AOB-amoA and nirK were significantly and positively correlated with cumulative NO emissions. The stimulated activity of ammonia monooxygenase and growths of AOB and total comammox Nitrospira by biochar were weakened by nitrification inhibitor, implying decreased nitrification-driven NO production. The nitric oxide reductase activity and related qnorB abundance in nitrification inhibitor-added soils were increased by biochar, indicating promoted NO consumption during denitrification. The nirK abundance and NO2−−N intensity were decreased more by co-applications of biochar or nitrification inhibitor. Moreover, both biochar and nitrification inhibitor changed bacterial β-diversity, and their co-application synergistically enriched Armatimonadetes and Verrucomicrobia abundances and decreased WPS-2 abundance. This study highlights that co-applications of biochar and nitrification inhibitor can make their respective advantages complementary to each other, thereby achieving a larger mitigation of NO emissions from agricultural soils in tropical regions.