Food Web Research Articles

Increased pathogen exposure of a marine apex predator over three decades.

Environmental changes associated with global warming create new opportunities for pathogen and parasite transmission in Arctic wildlife. As an apex predator ranging over large, remote areas, changes in pathogens and parasites in polar bears are a useful indicator of changing transmission dynamics in Arctic ecosystems. We examined prevalence and risk factors associated with exposure to parasites and viral and bacterial pathogens in Chukchi Sea polar bears. Serum antibodies to six pathogens were detected and prevalence increased between 1987-1994 and 2008-2017 for five: Toxoplasma gondii, Neospora caninum, Francisella tularensis, Brucella abortus/suis, and canine distemper virus. Although bears have increased summer land use, this behavior was not associated with increased exposure. Higher prevalence of F. tularensis, Coxiella burnetii, and B. abortus/suis antibodies in females compared to males, however, could be associated with terrestrial denning. Exposure was related to diet for several pathogens indicating increased exposure in the food web. Elevated white blood cell counts suggest a possible immune response to some pathogens. Given that polar bears face multiple stressors in association with climate change and are a subsistence food, further work is warranted to screen for signs of disease.

Food Webs and Feedbacks: The Untold Ecological Relevance of Antimicrobial Resistance as Seen in Harmful Algal Blooms

Antimicrobial resistance (AMR) has long been framed as an epidemiological and public health concern. Its impacts on the environment are unclear. Yet, the basis for AMR is altered cell physiology. Just as this affects how microbes interact with antimicrobials, it can also affect how they interact with their own species, other species, and their non-living environment. Moreover, if the microbes are globally notorious for causing landscape-level environmental issues, then these effects could alter biodiversity and ecosystem function on a grand scale. To investigate these possibilities, we compiled peer-reviewed literature from the past 20 years regarding AMR in toxic freshwater cyanobacterial harmful algal blooms (HABs). We examined it for evidence of AMR affecting HAB frequency, severity, or persistence. Although no study within our scope was explicitly designed to address the question, multiple studies reported AMR-associated changes in HAB-forming cyanobacteria (and co-occurring microbes) that pertained directly to HAB timing, toxicity, and phase, as well as to the dynamics of HAB-afflicted aquatic food webs. These findings highlight the potential for AMR to have far-reaching environmental impacts (including the loss of biodiversity and ecosystem function) and bring into focus the importance of confronting complex interrelated issues such as AMR and HABs in concert, with interdisciplinary tools and perspectives.

Marine N2-fixer Crocosphaera waterburyi.

Marine N2-fixing cyanobacteria, including the unicellular genus Crocosphaera, are considered keystone species in marine food webs. Crocosphaera are globally distributed and provide new sources of nitrogen and carbon, which fuel oligotrophic microbial communities and upper trophic levels. Despite their ecosystem importance, only one pelagic, oligotrophic, phycoerythrin-rich species, Crocosphaera watsonii, has ever been identified and characterized as widespread. Herein, we present a new species, named Crocosphaera waterburyi, enriched from the North Pacific Ocean. C. waterburyi was found to be phenotypically and genotypically distinct from C. watsonii, active in situ, distributed globally, and preferred warmer temperatures in culture and the ocean. Additionally, C. waterburyi was detectable in 150- and 4000-meter sediment export traps, had a relatively larger biovolume than C. watsonii, and appeared to aggregate in the environment and laboratory culture. Therefore, it represents an additional, previously unknown link between atmospheric CO2 and N2 gas and deep ocean carbon and nitrogen export and sequestration.

Enormous diversity of RNA viruses in economic crustaceans.

The study delves into the largely uncharted territory of RNA viruses in crustaceans, which are not only vital for global food supply but also play a pivotal role in marine ecosystems. Focusing on economic crustaceans, the research uncovers 90 RNA viruses, with 69 being potentially new to science, highlighting the vast unknown viral diversity within these marine organisms. The findings reveal that these viruses are often related to those found in other invertebrates and tend to share close relationships with viruses from species within the same food web or habitat. This suggests that viruses may move between different marine species more frequently than previously thought. The discovery of such a wide variety of viruses, particularly the diverse genome structures of newly identified picornaviruses, is a significant leap forward in understanding the crustacean virology. This knowledge is crucial for managing disease risks in aquaculture and maintaining the balance of marine ecosystems.

Ground beetle trophic interactions alter available nitrogen in forest soil

It is generally held that microbes exert primary control over nitrogen availability in temperate forests. Yet the role of soil and litter‐dwelling invertebrates to provide additional control via the breakdown of organic matter is an area of current exploration. Through trophic interactions within soil food webs, predators may indirectly affect prey with cascading effects on litter breakdown and nitrogen availability. The importance of these interactions, however, may be context‐dependent, varying with the stage of forest development and associated decomposer species composition given that young and old forests have vast differences in nitrogen availability, vegetation litter, soil properties and invertebrate functional groups. We examined ground beetle control over soil nitrogen and soil properties using a 68‐day mesocosm experiment that manipulated trophic structure (omnivore + predator beetles, predator beetles, and no beetles) in a young and old forest stand in the northeastern United States. In the young forest, net nitrogen mineralization decreased under predator + omnivore and the bulk soil C:N ratio in the old forest. However, we found no response in either forest context to the predator only treatment. Our study demonstrates the potential for ground beetles to strongly impact nitrogen availability and soil properties in forest ecosystems. Therefore, animal trophic interactions and their contexts must be included in our paradigm of nutrient cycles in temperate forests.

Coral high molecular weight carbohydrates support opportunistic microbes in bacterioplankton from an algae-dominated reef.

Dissolved organic matter (DOM) released by benthic primary producers fuels coral reef food webs. Anthropogenic stressors cause shifts from coral to algae dominance on many reefs, and resulting alterations in the DOM pool can promote opportunistic microbes and potential coral pathogens in reef water. To better understand these DOM-induced effects on bacterioplankton communities, we compared the carbohydrate composition of coral- and macroalgae-DOM and analyzed the response of bacterioplankton from an algae-dominated reef to these DOM types. In line with the proposed microbialization of reefs, coral-DOM was efficiently utilized, promoting energy transfer to higher trophic levels, whereas macroalgae-DOM likely stimulated microbial respiration over biomass production. Contrary to earlier findings, coral- and not algal-DOM selected for opportunistic microbial taxa, indicating that a change in the prevalent DOM composition, and not DOM type, may promote the rise of opportunistic microbes. Presented results may also apply to other coastal marine ecosystems undergoing benthic community shifts.

Thraustochytrids and Algae as Sustainable Sources of Long-Chain Omega-3 Fatty Acids for Aquafeeds

There is limited ability to biosynthesize long-chain omega-3 fatty acids such as EPA and DHA in food webs leading to humans. Seafood is the key source of ω3 LC-PUFA, with aquaculture expected to meet rising global demand; however, marine fish have a high dietary requirement for EPA and DHA themselves. This was traditionally met using unsustainable dietary fish oil and fish meal, but limited supply and environmental concerns have dictated research on replacements. Among the industrial sources of EPA and DHA, microalgae and especially thraustochytrids stand out as resources with high concentrations. Although unicellular, thraustochytrids are not microalgae as they are not photosynthetic but instead are microheterotrophs. This removes the light requirement and facilitates high yields of monoculture for the production of single-cell oils. The availability, in high concentrations, of usually one or the other essential fatty acid permits a calibration of the EPA and DHA dose, which is especially useful as their effects have mainly been considered together in medical and aquaculture research. EPA and DHA have different effects on cell function and are precursors of different bioactive compounds. Using thraustochytrids, microalgae, and heterotrophic dinoflagellates, the importance of DHA has been investigated. DHA was essential for optimizing the growth of the early life stages of scallops and finfish and was preferentially incorporated into fish membrane phospholipids. The production of microalgae and microheterotrophs can contribute to the treatment of wastewater and waste gas, further enhancing their sustainability and reducing the environmental costs of aquaculture.

Diet composition and isotopic analysis unveil trophic dynamics of a fish in a controlled flood pulse area of the Amazonia

Diet composition and isotopic analysis unveil trophic dynamics of a fish in a controlled flood pulse area of the Amazonia

Methane fueled lake pelagic food webs in a Cretaceous greenhouse world

Methane (CH4) is a potent greenhouse gas but also an important carbon and energy substrate for some lake food webs. Understanding how CH4 incorporates into food webs is, therefore, crucial for unraveling CH4 cycling and its impacts on climate and ecosystems. However, CH4-fueled lake food webs from pre-Holocene intervals, particularly during greenhouse climates in Earth history, have received relatively little attention. Here, we present a long-term record of CH4-fueled pelagic food webs across the Cretaceous Oceanic Anoxic Event 1a (~120 Mya) that serves as a geological analog to future warming. We show an exceptionally strong expansion of both methanogens and CH4-oxidizing bacteria (up to 87% of hopanoid-producing bacteria) during this Event. Grazing on CH4-oxidizing bacteria by zooplankton (up to 47% of ciliate diets) within the chemocline transferred substantial CH4-derived carbon to the higher trophic levels, representing an important CH4 sink in the water column. Our findings suggest that as Earth warms, microbial CH4 cycling could restructure food webs and fundamentally alter carbon and energy flows and trophic pathways in lake ecosystems.

Health risks and sources of PCDD/Fs and PCBs residue in cultured crabs

The Chinese mitten crab (Eriocheir sinensis) holds significant importance as a popular aquaculture food source; however, there are concerns about its potential contamination with polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs), polychlorinated biphenyls (PCBs) from both food and aquatic environment. To assess the associated health risks and identify potential sources of contamination in crabs, a comprehensive investigation was conducted, including a total of 70 samples from the crab food web. The results demonstrated that crabs predominantly exhibited elevated concentrations of PCBs and dl-PCBs, with mean concentrations of 12 207 ± 11 962 pg g-1 and 554 ± 203 pg g-1, respectively, while PCDD/Fs concentrations were comparatively lower at 20 ± 17 pg g-1. The accumulation of PCBs in crabs significantly surpassed that of PCDD/Fs. The material balance of PCDD/Fs and PCBs in the crab food web was estimated, indicating that sediments and feeds likely constitute the two primary sources of PCDD/Fs and PCBs in crabs. The monthly intake of PCDD/Fs and PCBs through crab consumption accounted for 30% of the dietary intake, which was well below the provisional tolerable monthly intake (PTMI) limit. The weekly intake of PCDD/Fs and PCBs for adults consuming one crab (100 g) does not pose health risks and the recommended weekly intake of white crabmeat and brown crabmeat is 443 g and 21 g, respectively.

Warming could shift the phenological responses of benthic microalgae in temperate intertidal zones

Intertidal mudflats colonized by sediment-dwelling microphytobenthos deliver a wide range of ecosystem services. Here we simulate the response of microphytobenthos, located on a temperate tidal mudflat along the French Atlantic coast in Northwestern Europe, exposed to changes in light, temperature, and sea level conditions predicted by the Intergovernmental Panel on Climate Change. Without sea level rise, microphytobenthos benefit from the balancing effect of net primary production fluctuations, experiencing an increase in winter and a decrease in summer. Under the worst emissions scenario, microphytobenthos bloom up to 14 days earlier in spring and 5 days later in fall, thereby extending the low-level microphytobenthos biomass period by an additional 3 weeks in summer. Sea level rise reduces light exposure leading to a pronounced decline in microphytobenthos under the medium-low emissions and worst emissions scenarios. We provide evidence that the anticipated warmer climate and sea level rise will have an impact on microphytobenthos, potentially triggering cascading effects across the entire food web and disrupting ecosystem services.

Consequences of terrestrial top predator control by Patagonian sheep farmers for coastal marine food webs

Most seabird species avoid predation by locating their breeding colonies in predator-free islands, inaccessible cliffs, capes, or on the mainland in Antarctica, the only continent without terrestrial predators. Departing from this general rule, a significant number of large Magellanic penguin (Spheniscus magellanicus) colonies exist nowadays in South American Atlantic mainland shores spanning a wide latitudinal range. Based on published radiocarbon dating of colonies, along with historical and archaeological records, we postulate that the current distribution of these colonies may be a response to predator eradication by sheep farmers. This would have made breeding habitats near marine food resources accessible and may have also reduced competition with neighboring colonies. We employed stable isotope analysis to estimate the penguin contribution to the diet of four pumas responsible for killing thousands of penguins in a breeding colony located within a coastal national park. Furthermore, we used a bioenergetic model to quantify the consumption of forage fish under different population distribution and abundance scenarios. We briefly discuss the implications of our results in the context of conservation policies aimed at establishing ecosystem baselines along the Patagonian shores.

Role of trophic interactions in transfer and cascading impacts of plant protection products on biodiversity: a literature review.

Plant protection products (PPPs) have historically been one of the classes of chemical compounds at the frontline of raising scientific and public awareness of the global nature of environmental pollution and the role of trophic interactions in shaping the impacts of chemicals on ecosystems. Despite increasingly strong regulatory measures since the 1970s designed to avoid unintentional effects of PPPs, their use is now recognised as a driver of biodiversity erosion. The French Ministries for the Environment, Agriculture and Research commissioned a collective scientific assessment to synthesise the current science and knowledge on the impacts of PPPs on biodiversity and ecosystem services. Here we report a literature review of the state of knowledge on the propagation of PPP residues and the effects of PPPs in food webs, including biopesticides, with a focus on current-use PPPs. Currently used PPPs may be stronger drivers of the current biodiversity loss than the banned compounds no longer in use, and there have been far fewer reviews on current-use PPPs than legacy PPPs. We first provide a detailed overview of the transfer and propagation of effects of PPPs through trophic interactions in both terrestrial and aquatic ecosystems. We then review cross-ecosystem trophic paths of PPP propagation, and provide insight on the role of trophic interactions in the impacts of PPPs on ecological functions. We conclude with a summary of the available knowledge and the perspectives for tackling the main gaps, and address areas that warrant further research and pathways to advancing environmental risk assessment.

Diversity, Composition and Distribution Patterns of Spiders (Arachnida: Araneae) in Sand Forest, South Africa

ABSTRACTSpiders are the dominant representative of the top predator guild in many terrestrial ecosystems, but their diversity and distribution in forests in South Africa are still understudied. This study aimed to determine ground‐dwelling spider diversity, composition and distribution patterns in both sand forest and savanna (and their ecotone) using pitfall traps and to provide a spider species checklist for these three habitats in Phinda Private Game Reserve. A total of 410 individuals from 64 species and 21 families were recorded from the three habitat types. The Lycosidae family and Pardosa crassipalpis were the most dominant family and species. Spider abundances were similar between sand forest and the ecotone, but lower in savanna. However, species richness was similar across habitats. Spider species assemblages were similar between sand forest and the ecotone, but differed from the species assemblages in savanna. Spiders play an important role in food webs both below‐ and aboveground. Therefore, determining their diversity and distribution contributes to the overall understanding of the ecosystem in addition to promoting conservation efforts of key habitats such as the critically endangered sand forest.

The Impact of Winter Cover Crops on Soil Nematode Communities and Food Web Stability in Corn and Soybean Cultivation.

There is increasing adoption of winter cover crops (WCCs) in corn and soybean production in Canada, primarily to reduce erosion and increase soil organic matter content. WCCs have the potential to influence nematode communities by increasing free-living nematodes and decreasing plant-parasitic nematodes or vice versa. However, the mechanism by which WCCs change nematode community assemblages still remains a key question in soil food web ecology. We tested the hypothesis that the long-term use of rye (Secale cereale), barley (Hordeum vulgare) and oat (Avena sativa) as monocultures or mixtures promotes nematode communities and improves overall soil health conditions compared to winter fallow. The results from this study revealed that the use of WCCs generally promoted a higher abundance and diversity of nematode communities, whereas plant parasitic nematodes were the most abundant in winter fallow. Moreover, the mixtures of WCCs had more similar nematode communities compared to rye alone and winter fallow. The structure and enrichment indices were higher with WCCs, indicating higher nutrient cycling and soil suppressiveness, which are signs of healthy soil conditions. Furthermore, WCCs significantly reduced the populations of root lesion nematode Pratylenchus, although their numbers recovered and increased during the main crop stages. Additionally, mixtures of WCCs promoted the highest abundance of the stunt nematode Tylenchorhynchus, whereas winter fallow had a higher abundance of the spiral nematode Helicotylenchus during the fallow period and the main crop stages. The results show that the long-term use of cover crops can have a positive impact on nematode communities and the soil food web, but these changes depend on the type of WCCs and how they are used.

Algae-fungi symbioses and bacteria-fungi co-exclusion drive tree species-specific differences in canopy bark microbiomes.

With over 3 trillion trees, forest ecosystems comprise nearly one-third of the terrestrial surface of the Earth. Very little attention has been given to the exploration of the above-ground plant microbiome of trees, its complex trophic interactions, and variations among tree species. To address this knowledge gap, we applied a primer-independent shotgun metatranscriptomic approach to assess the entire living canopy bark microbiome comprising prokaryotic and eukaryotic primary producers, decomposers, and various groups of consumers. With almost 1500 genera, we found a high microbial diversity on three tree species with distinct bark textures: oak (Quercus robur), linden (Tilia cordata), both with rough bark, and maple (Acer pseudoplatanus) with smooth bark. Core co-occurrence network analysis revealed a rich food web dominated by algal primary producers, and bacterial and fungal decomposers, sustaining a diverse community of consumers, including protists, microscopic metazoans and predatory bacteria. Whereas maple accommodated a depauperate microbiome, oak and linden accommodated a richer microbiome mainly differing in their relative community composition: Bacteria exhibited an increased dominance on linden, whereas co-occurring algae and fungi dominated on oak, highlighting the importance of algal-fungal lichen symbioses even at the microscopic scale. Further, due to bacteria-fungi co-exclusion, bacteria on bark are not the main beneficiaries of algae-derived carbon compounds as it is known from aquatic systems.

Dryland state transitions alter trophic interactions in a predator-prey system.

Environmental change is expected to alter trophic interactions and food web dynamics with consequences for ecosystem structure, function and stability. However, the mechanisms by which environmental change influences top-down and bottom-up processes are poorly documented. Here, we examined how environmental change caused by shrub encroachment affects trophic interactions in a dryland. The predator-prey system included an apex canid predator (coyote; Canis latrans), an intermediate canid predator (kit fox; Vulpes macrotis), and two herbivorous lagomorph prey (black-tailed jackrabbit, Lepus californicus; and desert cottontail, Sylvilagus audubonii) in the Chihuahuan Desert of New Mexico, USA. We evaluated alternative hypotheses for how shrub encroachment could affect habitat use and trophic interactions, including (i) modifying bottom-up processes by reducing herbaceous forage, (ii) modifying top-down processes by changing canid space use or the landscape of fear experienced by lagomorph prey and (iii) altering intraguild interactions between the dominant coyote and the intermediate kit fox. We used 7 years of camera trap data collected across grassland-to-shrubland gradients under variable precipitation to test our a priori hypotheses within a structural equation modelling framework. Lagomorph prey responded strongly to bottom-up pulses during years of high summer precipitation, but only at sites with moderate to high shrub cover. This outcome is inconsistent with the hypothesis that bottom-up effects should be strongest in grasslands because of greater herbaceous food resources. Instead, this interaction likely reflects changes in the landscape of fear because perceived predation risk in lagomorphs is reduced in shrub-dominated habitats. Shrub encroachment did not directly affect predation pressure on lagomorphs by changing canid site use intensity. However, site use intensity of both canid species was positively associated with jackrabbits, indicating additional bottom-up effects. Finally, we detected interactions between predators in which coyotes restricted space use of kit foxes, but these intraguild interactions also depended on shrub encroachment. Our findings demonstrate how environmental change can affect trophic interactions beyond traditional top-down and bottom-up processes by altering perceived predation risk in prey. These results have implications for understanding spatial patterns of herbivory and the feedbacks that reinforce shrubland states in drylands worldwide.

Tissue distribution, biomagnification, human health risk, and risk mitigation of perfluoroalkyl acids (PFAAs) in the aquatic food web of an urban fringe lake: Insights from urban-rural and seasonal scales

Perfluoroalkyl acids (PFAAs), renowned for their exceptional physical and chemical properties, are ubiquitous in urban and rural environments. Despite their widespread usage, more knowledge is needed concerning their accumulation and transfer mechanisms within the aquatic food webs of urban fringe lakes, especially across rural-urban and seasonal scales. This study investigated the tissue distribution, bioaccumulation, biomagnification, associated human health risks, and potential risk mitigation strategies of 15 PFAAs within the food web of Luoma Lake, a prototypical urban fringe lake. All targeted PFAAs were detected in samples, with ∑PFAA concentrations ranging from 116.97 to 564.26 ng/g dw in muscles and 26.96–1850.95 ng/g dw in viscera. Spatial variations revealed significantly higher ∑PFAA concentrations in the muscles from the urban subregion (∑PFAA: 359.66 ± 76.48 ng/g dw) compared to the rural subregion (∑PFAA: 328.86 ± 87.51 ng/g dw). Seasonal fluctuations impacted PFAA concentrations in fish and crustacean muscles but exhibited negligible effects on bivalve muscles. Spatial variations only influenced PFAA concentrations in specific viscera (gill, liver, kidney), while seasonal changes had minimal effects on viscera. The organisms demonstrated varying bioaccumulation capacities, with crustaceans displaying the highest bioaccumulation potential, followed by crustaceans and fish. Both spatial and seasonal variations modulated the bioaccumulation patterns of PFAA in muscles, whereas bioaccumulation in viscera was only influenced by seasonal factors. Notably, PFAA biomagnification along the food web was exclusively governed by spatial distribution, remaining unaffected by seasonal changes. The human health risk assessment underscored the potential adverse health impacts of PFOS and PFOA, particularly on young children (aged 2 to <6 years). This study further proposed comprehensive recommendations for mitigating PFAA-induced health risks, encompassing source control, selective consumption, pre-cooking treatments, and strategic cooking method selection. This research provides crucial insights into the ecological behaviors and health implications of PFAA in urban fringe lakes.

Characterizing the Areal Extent of PFAS Contamination in Fish Species Downgradient of AFFF Source Zones.

Most monitoring programs next to large per- and polyfluoroalkyl substances (PFAS) sources focus on drinking water contamination near source zones. However, less is understood about how these sources affect downgradient hydrological systems and food webs. Here, we report paired PFAS measurements in water, sediment, and aquatic biota along a hydrological gradient away from source zones contaminated by the use of legacy aqueous film-forming foam (AFFF) manufactured using electrochemical fluorination. Clustering analysis indicates that the PFAS composition characteristic of AFFF is detectable in water and fishes >8 km from the source. Concentrations of 38 targeted PFAS and extractable organofluorine (EOF) decreased in fishes downgradient of the AFFF-contaminated source zones. However, PFAS concentrations remained above consumption limits at all locations within the affected watershed. Perfluoroalkyl sulfonamide precursors accounted for approximately half of targeted PFAS in fish tissues, which explain >90% of EOF across all sampling locations. Suspect screening analyses revealed the presence of a polyfluoroketone pharmaceutical in fish species, and a fluorinated agrochemical in water that likely does not accumulate in biological tissues, suggesting the presence of diffuse sources such as septic system and agrochemical inputs throughout the watershed in addition to AFFF contamination. Based on these results, monitoring programs that consider all hydrologically connected regions within watersheds affected by large PFAS sources would help ensure public health protection.

Nutritional thermal ecology: investigating the combined influence of temperature and nutrient availability on plant‐ectotherm trophic interactions

Many primary consumers in freshwater, marine and terrestrial systems are ectotherms (e.g. zooplankton and insects), whose metabolisms, and therefore nutritional demands, are modulated by temperature. Further, nutrient availability largely influences the quality of resources consumed by these organisms, and hence affects whether nutritional demands of consumers are fulfilled. From these considerations, a crucial question arises: how do temperature and nutrient availability together modulate trophodynamics at the basis of food webs? Addressing this question for zooplankton and insects is essential since these consumers are the most abundant metazoans on Earth, and they link primary production to higher trophic levels. Here, we synthesize the existing literature and offer avenues to guide future scientific endeavours. We highlight that the vast majority of studies on the combined influence of temperature and nutrient availability published to date focus on at least one of the following research topics: 1) metabolic requirements of ectotherms; 2) feeding behaviour; 3) eco‐evolutionary processes; and 4) trophodynamics. We pose that further advances in this field of research may provide a robust understanding of how modulations of consumer metabolic requirements and resource quality define consumer–producer interactions across marine, freshwater and terrestrial ecosystems. This research effort would enable to combine the fields of Ecological stoichiometry and of Metabolic theory of ecology, and create an integrated approach, which we propose to call Nutritional thermal ecology.