Trophic Strategies Research Articles

Are Changes Occurring in Bacterial Taxa Community and Diversity with the Utilization of Different Substrates within SIR Measurements?

This research explores how the availability of substrates affects the regulation of soil microbial communities and the taxonomical composition of bacteria. The goal is to understand the impact of organic matter and substrate availability and quality on the diversity of soil bacteria. The study observed gradual changes in bacterial diversity in response to the addition of different substrate-induced respiration (SIR) substrates. Understanding the structure, dynamics, and functions of soil microbial communities is essential for assessing soil quality in sustainable agriculture. The preference for carbon sources among bacterial phyla is largely influenced by their life history and trophic strategies. Bacterial phyla like Proteobacteria, Bacteroidetes, and Actinobacteria, which thrive in nutrient-rich environments, preferentially utilize glucose. On the other hand, oligotrophic bacterial phyla such as Acidobacteria or Chloroflexi, which are found in lower numbers, have a lower ability to utilize labile C. The main difference between the two lies in their substrate utilization strategies. Understanding these distinct strategies is crucial for uncovering the bacterial functional traits involved in soil organic carbon turnover. Additionally, adding organic matter can promote the growth of copiotrophic bacteria, thus enhancing soil fertility.

How marine are Marine Stramenopiles (MAST)? A cross-system evaluation.

Marine Stramenopiles (MAST) were first described two decades ago through ribosomal RNA gene (rRNA gene) sequences from marine surveys of microbial eukaryotes. MAST comprise several independent lineages at the base of the Stramenopiles. Despite their prevalence in the ocean, the majority of MAST diversity remains uncultured. Previous studies, mainly in marine environments, have explored MAST's cell morphology, distribution, trophic strategies, and genomics using culturing-independent methods. In comparison, less is known about their presence outside marine habitats. Here, we analyze the extensive EukBank dataset to assess the extent to which MAST can be considered marine protists. Additionally, by incorporating newly available rRNA gene sequences, we update Stramenopiles phylogeny, identifying three novel MAST lineages. Our results indicate that MAST are primarily marine with notable exceptions within MAST-2 and MAST-12, where certain subclades are prevalent in freshwater and soil habitats. In the marine water column, only a few MAST species, particularly within clades -1, -3, -4 and -7, dominate and exhibit clear latitudinal distribution patterns. Overall, the massive sequencing dataset analyzed in our study confirms and partially expands the previously described diversity of MASTs groups and underscores the predominantly marine nature of most of these uncultured lineages.

Removal of enrofloxacin as well as nutrients in mariculture water by Sesuvium portulacastrum system: Insights for biodegradation, ecotoxicity of enrofloxacin

Antibiotic contamination and eutrophication in mariculture have become problems that cannot be ignored, and enrofloxacin (ENR), as an example, is especially widely used in mariculture. This study firstly revealed that Sesuvium portulacastrum, a plant with world-wide distribution in coastal zones, with its rhizosphere microorganisms, could remove ENR as well as nutrients. The S. portulacastrum system could degrade ENR to small-molecule products 1,2,3,4-tetrahydroquinolin-4-ol and (2,4-dihydroxyphenyl)-cyclopropylamine. And there were 81.3–39.2 % removals of ENR with 0.01-100 mg/L. Although ENR significantly influenced functions of rhizosphere microbial community, like decreasing nitrogen fixation, shifting trophic strategies from phototrophy to chemoheterotrophy, nutrients (NH4+-N, NO2−-N, NO3−-N and total dissolved phosphorus) removal of S. portulacastrum system was essentially unaffected at low ENR concentration (< 1 mg/L). The removal mechanism of S. portulacastrum system was explored. Neither of the isolated root exudates and rhizosphere bacteria could degrade ENR, however, without rhizosphere bacteria, ENR removal rate would decrease. Root proteins including oxidase, decarboxylase, dehydrogenase, such as laccase, isocitrate dehydrogenase, delta-1-pyrroline-5-carboxylate dehydrogenase were overexpressed. Additionally, endocytosis is a pathway for antibiotics to enter S. portulacastrum. This study demonstrated that S. portulacastrum system could be used for remediation of antibiotics-nutrients combined pollution, and deepened understanding the antibiotic removal mechanism of macrophytes in mariculture, moreover, provided new macroplant species and a theoretical basis for antibiotics removal in aquatic systems.

Composting of Cow-Dung-Amended Soil by the Dung Beetle Catharsius molossus L. Improves Bacterial Ecological Functions Related to Nitrogen Mineralization and Human and Plant Pathogenesis

The Asian dung beetle (Catharsius molossus L.; Coleoptera: Scarabeidae) has been shown to positively affect soil bacterial diversity and the agronomic features of crop plants. In this study, we used bioinformatic tools to investigate the differences in bacterial functional phenotypes and ecological functions between control soil, cow dung-amended soil (CD), and cow dung-amended soil composted by dung beetles (DB). The soil bacterial metagenomes were sequenced and analyzed with the bioinformatic packages BugBase, PICRUSt2, Tax4Fun, and FAPROTAX to evaluate the effects of dung beetle-mediated composting on bacterial functions such as human and plant pathogenicity, trophic strategies, and soil nutrient transformation. BugBase proved useful for the determination of differences in major functional phenotypes, whereas FAPROTAX was effective at identifying differences in bacterial ecological functions between the treatments. Both tools suggested a relative decrease in human pathogens in the DB soil. This was corroborated by the pairwise comparison of abundances in bacterial species, which showed a significant reduction in the abundance of the broad-host-range pathogen Pseudomonas aeruginosa in the DB soil. In addition, FAPROTAX suggested a decrease in plant pathogens and an increase in chitinolytic bacteria, meaning that the DB treatment might be beneficial to the plant-growth-promoting bacteria involved in biological control. Finally, FAPROTAX revealed an array of ecological functions related to trophic strategies and macro- and micronutrient metabolism. According to these results, the activity of C. molossus beetles enhanced methanotrophy, ammonification, nitrification, sulfate reduction, and manganese oxidation, whereas iron respiration was decreased in the DB-treated soil. Our results represent a collection of general insights into the effects of C. molossus beetles on soil bacterial functions, which also reflect on the nutrient composition of dung beetle-composted soil.

Long-term anthropogenic drivers of diet composition and niche breadth in an endangered avian scavenger: The scant role of sanitary regulations

The widespread and accelerated transformation experienced by our planet results in populations of endangered species having to survive in highly-altered environments and increasingly relying on resources provided by human subsidies. Presently, vultures rank among the most imperiled functional groups of large vertebrates globally, a situation that is largely attributed to the rapid intensification of agriculture and the subsequent transformation of farming practices and agro-grazing landscapes. Hence, documenting the long-term fluctuations in the vultures’ dietary patterns in response to environmental changes, particularly in livestock management, is of utmost significance. Here, by means of bulk stable isotope analysis (δ13C and δ15N), we examined long-term variations in diet composition and niche breadth in a population of the endangered Egyptian vulture (Neophron percnopterus) in the north of the Iberian Peninsula. We specifically focused on the effect of European sanitary regulations enacted in 2014, which allow sheep farmers to abandon livestock remains for consumption by scavenging birds, except for pig carcasses. We found that the implementation of these new regulations did not cause a change in the diet of vultures. Changes were only detected in scrubland areas and were driven by an increase in the consumption of wild rabbit which, in turn, lead to expansion of the trophic niche. These results indicate that these endangered vultures are heavily dependent on food sources derived from intensive farming, mostly of pigs illegally disposed in the wild, and moreover, highlight the importance of carcasses of small vertebrates, often disregarded in conservation programs in favor of the contribution of livestock remains. Our research provides valuable insights into the spatiotemporal dynamics of trophic strategies among avian scavengers, specifically in the context of changes resulting from intensified human-pressures on agro-grazing Mediterranean landscapes.

Riparian forests shape trophic interactions in detrital stream food webs

Abstract Freshwater and terrestrial biodiversity are linked through spatial resource flows. Key examples are detrital subsidies from the riparian vegetation that form the base of food webs in small streams. Despite the central role of detritivores in these food webs, the consequences of altered riparian vegetation type and resource availability on their trophic strategies are less known. Therefore, we experimentally tested direct and indirect effects of riparian vegetation type (i.e. riparian forests present vs. absent) on trophic interactions and dietary imbalances of aquatic detritivores. To characterise trophic strategies, we used stoichiometric and isotopic differences between consumers and resources as functional measures of trophic link strength in leaf litter bags naturally colonised by stream decomposers and detritivores. Our results show that an absence of riparian forests affected stoichiometric and isotopic properties in stream detrital food webs. Where local riparian forests were absent, leaf litter showed lower C:N ratios, which only trichopteran detritivores mirrored, whereas plecopteran and crustacean detritivores showed differences in their isotopic signatures. Diverging patterns between resources and consumers could lead to a rewiring of energy flow paths and weaken the coupling between aquatic detritivores and terrestrial detritus. Consequently, our findings demonstrate that riparian forests are essential for aquatic food webs by not only influencing organisms themselves but also their trophic interactions and energy flow paths. Aquatic detritivores depending on terrestrial subsidies can be highly sensitive to local changes in their resource environment. Therefore, functionally divergent patterns between resources and consumers in recipient systems highlight how habitat properties of the donor system can affect food webs connected across ecosystem boundaries. Read the free Plain Language Summary for this article on the Journal blog.

Unveiling vertical migration patterns of the mesopelagic fish Ceratoscopelus warmingii in cold seep ecosystems: A trophic niche perspective

Ceratoscopelus warmingii, a common mesopelagic fish in cold seep ecosystems, plays a crucial role in transferring energy and materials between different water layers, thereby influencing deep-sea carbon cycling and storage. In August 2023, we collected samples from four depths (75 m, 400 m, 500 m, and 600 m) in cold seep waters to analyze the trophic niche characteristics of C. warmingii using stable isotope techniques. The results indicated significant differences in δ13C and δ15N values among the water layers, with mean δ13C and δ15N values of −19.85 ‰±0.33 ‰ and 8.41 ‰±0.62 ‰, respectively. Indicators of trophic structure showed distinct vertical differentiation, with the width of the trophic niche decreasing as depth increased. At 75 m and 400 m, the consistency of CR and NR indicators and high trophic niche overlap indicated similar food sources, confirming vertical migration behavior. In contrast, at 500 m, the MNND and SDNND values suggested a more stable trophic structure, while at 600 m, changes in feeding sources pointed to a distinct population. The Standard Ellipse Area of Overlap (SEAc) was highest between 75 m and 400 m, while the divergence of trophic ecological niches at 600 m, with different food sources, suggests that cold seep ecosystems at this depth provide a relatively stable trophic structure for C. warmingii and support the formation of an independent population. In cold seep ecosystems, C. warmingii employs adaptive trophic strategies to optimize survival under varying habitat conditions at different depths. This vertical trophic differentiation reduces intraspecific competition and enhances population stability in deep-sea habitats. This study enhances our understanding of the trophic niche and vertical migration of C. warmingii in cold seep ecosystems, significantly contributing to our knowledge of biodiversity, energy flow, and material cycling in these unique environments.

Rhizaria in the oligotrophic ocean exhibit clear temporal and vertical variability

Recently studies have shown that Rhizaria, a super-group of marine protists, have a large role in pelagic ecosystems. They are unique in that they construct mineral tests out of silica, calcium carbonate, or strontium sulfate. As a consequence, Rhizaria can have large impacts on the ocean’s cycling of carbon and other elements. However, less is known about Rhizaria ecology or their role in the pelagic food-web. Some taxa, like certain Radiolarians, are mixotrophic, hosting algal symbionts. While other taxa are flux-feeders or even predatory carnivores. Some prior research has suggested that Rhizaria will partition vertically in the water column, likely due to different trophic strategies. However, very few studies have investigated their populations over extended periods of time. In this study, we present data investigating Rhizaria abundance and vertical distribution from over a year of monthly cruises in the Sargasso Sea. This study represents the first quantification of Rhizaria throughout the mesopelagic zone in an oligotrophic system for an extended period of time. We use this data to investigate the hypothesis that Rhizaria taxonomic groups will partition due to trophic mode. We also investigate how their abundance varies in accordance with environmental parameters. Rhizaria abundance was quantified using an Underwater Vision Profiler (UVP5), an in-situ imaging device. Ultimately, we show that different Rhizaria taxa will have unique vertical distribution patterns. Models relating their abundance to environmental parameters have mixed results, yet particle concentration is a common predictive variable, supporting the importance of heterotrophy amongst many taxa.

Long-Read Sequencing Unlocks New Insights into the Amphidinium carterae Microbiome.

Dinoflagellates are one of the largest groups of marine microalgae and exhibit diverse trophic strategies. Some dinoflagellates can produce secondary metabolites that are known to be toxic, which can lead to ecologically harmful blooms. Amphidinium carterae is one species of dinoflagellate that produces toxic compounds and is used as a model for dinoflagellate studies. The impact of the microbiome on A. carterae growth and metabolite synthesis is not yet fully understood, nor is the impact of bacterial data on sequencing and assembly. An antibiotic cocktail was previously shown to eliminate 16S amplification from the dinoflagellate culture. Even with drastically reduced bacterial numbers during antibiotic treatment, bacterial sequences were still present. In this experiment, we used novel Nanopore long-read sequencing techniques on A. carterae cultures to assemble 15 full bacterial genomes ranging from 2.9 to 6.0 Mb and found that the use of antibiotics decreased the percentage of reads mapping back to bacteria. We also identified shifts in the microbiome composition and identified a potentially deleterious bacterial species arising in the absence of the antibiotic treatment. Multiple antibiotic resistance genes were identified, as well as evidence that the bacterial population does not contribute to toxic secondary metabolite synthesis.

Arcobacteraceae are ubiquitous mixotrophic bacteria playing important roles in carbon, nitrogen, and sulfur cycling in global oceans.

Mixotrophy is an important trophic strategy for bacterial survival in the ocean. However, the global relevance and identity of the major mixotrophic taxa remain largely elusive. Here, we combined phylogenetic, metagenomic, and metatranscriptomic analyses to characterize ubiquitous Arcobacteraceae based on our deep-sea in situ incubations and the global data. The phylogenomic tree of Arcobacteraceae is divided into three large clades, among which members of clades A and B are almost all from terrestrial environments, while those of clade C are widely distributed in various marine habitats in addition to some terrestrial origins. All clades harbor genes putatively involved in chitin degradation, sulfide oxidation, hydrogen oxidation, thiosulfate oxidation, denitrification, dissimilatory nitrate reduction to ammonium, microaerophilic respiration, and metal (iron/manganese) reduction. Additionally, in clade C, more unique pathways were retrieved, including thiosulfate disproportionation, ethanol fermentation, methane oxidation, fatty acid oxidation, cobalamin synthesis, and dissimilatory reductions of sulfate, perchlorate, and arsenate. Within this clade, two mixotrophic Candidatus genera represented by UBA6211 and CAIJNA01 harbor genes putatively involved in the reverse tricarboxylic acid pathway for carbon fixation. Moreover, the metatranscriptomic data in deep-sea in situ incubations indicated that the latter genus is a mixotroph that conducts carbon fixation by coupling sulfur oxidation and denitrification and metabolizing organic matter. Furthermore, global metatranscriptomic data confirmed the ubiquitous distribution and global relevance of Arcobacteraceae in the expression of those corresponding genes across all oceanic regions and depths. Overall, these results highlight the contribution of previously unrecognized Arcobacteraceae to carbon, nitrogen, and sulfur cycling in global oceans.IMPORTANCEMarine microorganisms exert a profound influence on global carbon cycling and ecological relationships. Mixotrophy, characterized by the simultaneous utilization of both autotrophic and heterotrophic nutrition, has a significant impact on the global carbon cycling. This report characterizes a group of uncultivated bacteria Arcobacteraceae that thrived on the "hot time" of bulky particulate organic matter and exhibited mixotrophic strategy during the in situ organic mineralization. Compared with clades A and B, more unique metabolic pathways were retrieved in clade C, including the reverse tricarboxylic acid pathway for carbon fixation, thiosulfate disproportionation, methane oxidation, and fatty acid oxidation. Global metatranscriptomic data from the Tara Oceans expeditions confirmed the ubiquitous distribution and extensive transcriptional activity of Arcobacteraceae with the expression of genes putatively involved in carbon fixation, methane oxidation, multiple sulfur compound oxidation, and denitrification across all oceanic regions and depths.

The resting cyst of dinoflagellate Scrippsiella acuminata host bacterial microbiomes with more diverse trophic strategies under conditions typically observed in marine sediments.

Variation in the condition of marine sediments provides selective preservation milieus, which act as a key determinant for the abundance and distribution of dinoflagellate resting cysts in natural sediments. Microbial degradation is an understudied biological factor of potential importance in the processes. However, gaps remain in our knowledge about the fundamental information of the bacterial consortia associated with dinoflagellate resting cysts both in laboratory cultures and in the field. Here we used Scrippsiella acuminata as a representative of cyst-producing dinoflagellates to delineate the diversity and composition of bacterial microbiomes co-existing with the laboratory-cultured resting cysts, and to explore possible impacts of low temperature, darkness, and anoxia (the mock conditions commonly observed in marine sediments) on the associated bacterial consortia. Bacterial microbiome with high diversity were revealed associated with S. acuminata at resting stage. The mock conditions could significantly shift bacterial community structure and exert notably inhibitory effects on growth-promoting bacteria. Resting cysts under conditions typically observed in marine sediments fostered bacterial microbiomes with more diverse trophic strategies, characteristic of prominently enriched anaerobic chemotrophic bacteria generating energy via respiration with several different terminal electron acceptors, which yielded more acidic milieu unfavorable for the preservation of calcareous resting cysts. Our findings suggest that there is complex and dynamic interaction between dinoflagellates resting cysts and the associated bacterial consortia in natural sediments. This intrinsic interaction may influence the maintenance and/or accumulation of dinoflagellate resting cysts with potential of germination and initiation blooms in the field.

Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau

Permafrost, characterized by its frozen soil, serves as a unique habitat for diverse microorganisms. Understanding these microbial communities is crucial for predicting the response of permafrost ecosystems to climate change. However, large-scale evidence regarding stratigraphic variations in microbial profiles remains limited. Here, we analyze microbial community structure and functional potential based on 16S rRNA gene amplicon sequencing and metagenomic data obtained from an ∼1000 km permafrost transect on the Tibetan Plateau. We find that microbial alpha diversity declines but beta diversity increases down the soil profile. Microbial assemblages are primarily governed by dispersal limitation and drift, with the importance of drift decreasing but that of dispersal limitation increasing with soil depth. Moreover, genes related to reduction reactions (e.g., ferric iron reduction, dissimilatory nitrate reduction, and denitrification) are enriched in the subsurface and permafrost layers. In addition, microbial groups involved in alternative electron accepting processes are more diverse and contribute highly to community-level metabolic profiles in the subsurface and permafrost layers, likely reflecting the lower redox potential and more complicated trophic strategies for microorganisms in deeper soils. Overall, these findings provide comprehensive insights into large-scale stratigraphic profiles of microbial community structure and functional potentials in permafrost regions.

Trophic strategies of picoeukaryotic phytoplankton vary over time and with depth in the North Pacific Subtropical Gyre.

In oligotrophic oceans, the smallest eukaryotic phytoplankton are both significant primary producers and predators of abundant bacteria such as Prochlorococcus. However, the drivers and consequences of community dynamics among these diverse protists are not well understood. Here, we investigated how trophic strategies along the autotrophy-mixotrophy spectrum vary in importance over time and across depths at Station ALOHA in the North Pacific Subtropical Gyre. We combined picoeukaryote community composition from a 28-month time-series with traits of diverse phytoplankton isolates from the same location, to examine trophic strategies across 13 operational taxonomic units and 8 taxonomic classes. We found that autotrophs and slower-grazing mixotrophs tended to prevail deeper in the photic zone, while the most voracious mixotrophs were relatively abundant near the surface. Within the mixed layer, there was greater phagotrophy when conditions were most stratified and when Chl a concentrations were lowest, although the greatest temporal variation in trophic strategy occurred at intermediate depths (45-100 m). Dynamics at this site are consistent with previously described spatial patterns of trophic strategies. The success of relatively phagotrophic phytoplankton at shallower depths in the most stratified waters suggests that phagotrophy is a competitive strategy for acquiring nutrients when energy from light is plentiful.

Mode of carbon gain and fungal associations of Neuwiedia malipoensis within the evolutionarily early-diverging orchid subfamily Apostasioideae.

The earliest-diverging orchid lineage, Apostasioideae, consists only of two genera: Apostasia and Neuwiedia. Previous reports of Apostasia nipponica indicated a symbiotic association with an ectomycorrhiza-forming Ceratobasidiaceae clade and partial utilization of fungal carbon during the adult stage. However, the trophic strategy of Neuwiedia throughout its development remains unidentified. To further improve our understanding of mycoheterotrophy in the Apostasioideae, this study focused on Neuwiedia malipoensis examining both the mycorrhizal association and the physiological ecology of this orchid species across various development stages. We identified the major mycorrhizal fungi of N. malipoensis protocorm, leafy seedling and adult stages using molecular barcoding. To reveal nutritional resources utilized by N. malipoensis, we compared stable isotope natural abundances (δ13C, δ15N, δ2H, δ18O) of different developmental stages with those of autotrophic reference plants. Protocorms exhibited an association with saprotrophic Ceratobasidiaceae rather than ectomycorrhiza-forming Ceratobasidiaceae and the 13C signature was characteristic of their fully mycoheterotrophic nutrition. Seedlings and adults were predominantly associated with saprotrophic fungi belonging to the Tulasnellaceae. While 13C and 2H stable isotope data revealed partial mycoheterotrophy of seedlings, it is unclear to what extent the fungal carbon supply is reduced in adult N. malipoensis. However, the 15N enrichment of mature N. malipoensis suggests partially mycoheterotrophic nutrition. Our data indicated a transition in mycorrhizal partners during ontogenetic development with decreasing dependency of N. malipoensis on fungal nitrogen and carbon. The divergence in mycorrhizal partners between N. malipoensis and A. nipponica indicates different resource acquisition strategies and allows various habitat options in the earliest-diverging orchid lineage, Apostasioideae. While A. nipponica relies on the heterotrophic carbon gain from its ectomycorrhizal fungal partner and thus on forest habitats, N. malipoensis rather relies on own photosynthetic carbon gain as an adult, allowing it to establish in habitats as widely distributed as those where Rhizoctonia fungi occur.

The trophic strategy of the European honey‐buzzard Pernis apivorus during breeding: extravagant specialization or ingenious solution?

This article provides insight into the trophic strategy of a little‐known top predator and allows for a better understanding of the selective pressures that shape its diet. We studied the diet of European honey‐buzzards, a raptor specialized in consuming social wasp brood. The ratio of predator to prey biomasses is one of the highest among raptors. Considering the prey size and ingestion rate hypothesis, we investigated the honey‐buzzard's preferences for native and exotic eusocial vespid species. We also described other prey items in the diet and how diet changes throughout the breeding season. We installed trail cameras in 24 honey‐buzzard nests in north‐western Spain in 2018–2021. We estimated the proportion and daily rate of delivery of native common‐wasps, invasive Asian‐hornets, reptiles, and birds and the honey‐buzzard's preferences for vespid species. We performed LMMs, GLMMs, and CLMMs to analyse relationships between response variables and predictors. Honey‐buzzards mainly consumed vespids (82% of prey). Common‐wasps and Asian‐hornets were almost the only two vespids consumed. The invasive hornet was the second most consumed prey, but common‐wasps were preferred. Vespids became more important as the age and number of nestlings increased. Our results suggest that this diet is the adaptive result of the conflict between being a median‐sized insect‐eating nidicolous raptor and collecting enough morsels for the growth of its nestlings. This would allow them to deliver a relatively large amount of biomass to the nest with a high ingestion rate. We discussed implications of our findings for the management of the invasive wasp.

Local adaptation of trophic strategy determined the tolerance of coral Galaxea fascicularis to environmental fluctuations

The escalation of global change has resulted in heightened frequencies and intensities of environmental fluctuations within coral reef ecosystems. Corals originating from marginal reefs have potentially enhanced their adaptive capabilities in response to these environmental variations through processes of local adaptation. However, the intricate mechanisms driving this phenomenon remain a subject of limited investigation. This study aimed to investigate how corals in Luhuitou reef, a representative relatively high-latitude reef in China, adapt to seasonal fluctuations in seawater temperature and light availability. We conducted a 190-day plantation experiment with the widespread species, Galaxea fascicularis, in Luhuitou local, and from Meiji reef, a typical offshore tropical reef, to Luhuitou as comparison. Drawing upon insights from physiological adaptations, we focused on fatty acid (FA) profiles to unravel the trophic strategies of G. fascicularis to cope with environmental fluctuations from two origins. Our main findings are threefold: 1) Native corals exhibited a stronger physiological resilience compared to those transplanted from Meiji. 2) Corals from both origins consumed large quantities of energy reserves in winter, during which FA profiles of local corals altered, while the change of FA profiles of corals from Meiji was probably due to the excessive consumption of saturated fatty acid (SFA). 3) The better resilience of native corals is related to high levels of functional polyunsaturated fatty acid (PUFA), while insufficient nutrient reserves, possibly due to weak heterotrophic ability, result in the obstruction of the synthesis pathway of PUFA for corals from Meiji, leading to their intolerance to environmental changes. Consequently, we suggest that the tolerance of G. fascicularis to environmental fluctuations is determined by their local adapted trophic strategies. Furthermore, our findings underscore the notion that the rapid adaptation of relatively high-latitude corals to seasonal environmental fluctuations might not be readily attainable for their tropical counterparts within a brief timeframe.

Acropora tenuis energy acquisition along a natural turbidity gradient

Predicted future increases in both local and global stressors are expected to lead to elevated turbidity levels and an expansion of the geographical range of turbid coral reefs. Corals typically respond to elevated turbidity by increasing their rates of heterotrophy as means of compensating for low energy levels from reduced light and photosynthesis. We analysed Acropora tenuis energy acquisition along a natural turbidity gradient over two time points in Exmouth Gulf, Western Australia, using in-situ environmental data with coral physiology attributes and stable isotopes to assess trophic strategy. Our hypothesis was that as turbidity levels increased, so too would heterotrophy rates. Both δ13C and δ15N values decreased from the clear-water to the turbid sites, which along with Bayesian analysis revealed that all A. tenuis communities along the turbidity gradient are on a mixotrophic-heterotrophic feeding strategy scale. We propose that the low δ15N levels at the most turbid site may result from a combination of Acropora physiological limitations (e.g., reduced feeding capacity) and highly variable turbidity levels. In contrast, the higher δ15N at the clear-water site likely results from increased nutrient availability from additional sources such as upwelling. Our findings suggest that increased heterotrophy by coral hosts in turbid coral reef areas is not a universal pattern. Importantly, the loss of carbon in the turbid sites is not supplemented by nitrogen intake, which might suggest that Exmouth Gulfs Acropora communities are more vulnerable to future climate stressors and bleaching.

Feeding strategies of the ocean white fish (Caulolatilus princeps) and white spotted sand bass (Paralabrax albomaculatus) inside the Galapagos Marine Reserve

Understanding the diet of two demersal species, the ocean white fish (Caulolatilus princeps) and white spotted sand bass (Paralabrax albomaculatus) provides insights into the trophic strategies they have evolved to co-exist in rocky reefs and soft bottom habitats in the Galapagos Marine Reserve (GMR). We applied two complementary techniques (stomach content and stable isotopes analysis) to determine the trophic habits between species, and categories (sex, life stages and seasons). Sampling was carried out in several sites of fishing importance within the GMR between 2017 and 2018, obtaining 254 stomachs and 58 muscle samples for C. princeps, and 14 stomachs and 34 muscle samples for P. albomaculatus. Trophic spectrum (diet composition), of both predators contained pelagic and benthic prey. The slender anchovy (Anchoa ischana) was the most important prey for C. princeps with no significant differences in the diet between sex, life stages or seasons (p > 0.05); while the most important prey for P. albomaculatus was the threadfin bass (Pronotogrammus multifasciatus). The δ13C and δ15N signatures were significantly different among species (tvalue = 11.81, p < 0.05 and tvalue = 4.67, p <0.05, respectively) suggesting differences in the carbon source (i.e., feeding areas) as well as the preference for different trophic levels (i.e., different prey). Intraspecific analysis in C. princeps showed no differences within sex, life stage and seasons (p > 0.05). Feeding strategies were similar for both predators, with a reduced trophic niche and high variability between preys consumed. This work provides baseline information on two species of ecological and commercial importance within the GMR and highlights the value of trophic studies to generate useful information for an ecosystem-based fisheries management.

Growth and Cell Size of Microalga Auxenochlorella protothecoides AS-1 under Different Trophic Modes.

Certain microalgal species can grow with different trophic strategies depending on the availability of nutrient resources. They can use the energy from light or an organic substrate, or both, and can therefore be called autotrophs, heterotrophs, or mixotrophs. We recently isolated a microalgal strain from the microplastic biofilm, which was identified as Auxenochlorella protothecoides, AS-1. Strain AS-1 grew rapidly in bacterial culture media and exhibited different growth rates and cell sizes under different trophic conditions. We compared the growth performance of AS-1 under the three different trophic modes. AS-1 reached a high biomass (>4 g/L) in 6 days under mixotrophic growth conditions with a few organic carbons as a substrate. In contrast, poor autotrophic growth was observed for AS-1. Different cell sizes, including daughter and mother cells, were observed under the different growth modes. We applied a Coulter Counter to measure the size distribution patterns of AS-1 under different trophic modes. We showed that the cell size distribution of AS-1 was affected by different growth modes. Compared to the auto-, hetero- and mixotrophic modes, AS-1 achieved higher biomass productivity by increasing cell number and cell size in the presence of organic substrate. The mechanisms and advantages of having more mother cells with organic substrates are still unclear and warrant further investigations. The work here provides the growth information of a newly isolated A. protothecoides AS-1 which will be beneficial to future downstream applications.

Prevalence and Preferred Niche of Small Eukaryotes with Mixotrophic Potentials in the Global Ocean.

Unicellular eukaryotes that are capable of phago-mixotrophy in the ocean compete for inorganic nutrients and light with autotrophs, and for bacterial prey with heterotrophs. In this study, we ask what the overall prevalence of eukaryotic mixotrophs in the vast open ocean is, and how the availability of inorganic nutrients, light, and prey affects their relative success. We utilized the Tara Oceans eukaryotic 18S rRNA gene and environmental context variables dataset to conduct a large-scale field analysis. We also performed isolate-based culture experiments to verify growth and nutritional resource relationships for representative mixotrophic taxa. The field analysis suggested that the overall prevalence of mixotrophs were negatively correlated with nutrient concentrations and positively associated with light availability. Concentrations of heterotrophic bacteria as a single variable also presented a positive correlation with mixotrophic prevalence, but to a lesser extent. On the other hand, the culture experiments demonstrated a taxa-specific relationship between mixotrophic growth and nutrition resources, i.e., the growth of one group was significantly dependent on light availability, while the other group was less affected by light when they received sufficient prey. Both groups were capable of growing efficiently with low inorganic nutrients when receiving sufficient prey and light. Therefore, our field analysis and culture experiments both suggest that phago-mixotrophy for ocean eukaryotes is seemingly an efficient strategy to compensate for nutrient deficiency but unnecessary to compensate for light scarcity. This study collectively revealed a close relationship between abiotic and biotic nutritional resources and the prevalence of trophic strategies, shedding light on the importance of light and nutrients for determining the competitive success of mixotrophs versus autotrophic and heterotrophic eukaryotes in the ocean.