Abstract Background: The ACTS-CC trial is a randomized, controlled phase III study designed to validate the noninferiority of S-1 to UFT/leucovorin as adjuvant chemotherapy for stage III colon cancer and rectosigmoid cancer. A prospective biomarker search was performed as an auxiliary study of the ACTS-CC trial, using formalin-fixed, paraffin-embedded (FFPE) specimens obtained from 892 patients. The gene expression levels of 5-FU metabolizing enzymes and folate metabolizing enzymes and alterations of genome-wide copy numbers in tumor have been reported (2012, 2013 and 2014 Annual Meetings of AACR). In the present study, we performed correlation analyses of clinicopathological feature and gene expression level. Methods: Blocks of resected tumor specimens for this biomarker study were obtained after receiving informed consent from 892 of 1535 patients enrolled between April 2009 and January 2010. Macro-dissections were manually performed to extract total RNA and genomic DNA from 10-μm-thick FFPE specimens of colon cancer. Gene expression levels of 11 enzymes (TS, DPD, TP, OPRT, FPGS, GGH, DHFR, MTHFR, MTHFD, FOLRA, GART) related to 5-FU and folic acid metabolism were studied according to the Danenberg Tumor ProfileTM method (Shirota, Y. JCO 2001). Results: Gene expression levels were successfully estimated in 521-808 samples (84.0-90.0%, median 89.4%). Among 11 genes, GGH most strongly correlated with tumor locations: expression level of GGH in the distal colon was 1.8 times higher than those in the proximal colon. Gene expressions of DPD and GGH were significantly influenced by differentiation of tumor. DPD and GGH mRNA levels in poorly differentiated tumors were 2.0 or 2.5 times higher than those in well differentiated tumors, respectively. Likewise, TS most strongly correlated with tumor depth: expression level in T1 or T2 tumor was 1.3 times higher than those in T4 tumor. Conclusions: Location, differentiation and depth of the tumor correlated with each gene expressions. Our findings will facilitate understanding the characteristics of colon cancer. Further investigation on gene expressions including genome-wide copy number analysis may contribute to the exploration of valid biomarkers. Citation Format: Hiroyuki Uetake, Toshiaki Ishikawa, Megimi Ishiguro, Shigeyuki Matsui. Biomarker search using gene expression databases in a phase III controlled clinical trial of postoperative adjuvant chemotherapy for stage III colon cancer (ACTS-CC): correlation between clinicopathological factors and gene expression level. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr CT211. doi:10.1158/1538-7445.AM2015-CT211
Read full abstract