Soil organic carbon (C) and nitrogen (N) are profoundly affected by changes in land use and land cover (LULC), especially by farming in riparian zones. The five LULC classes were selected in contiguous order, i.e., undisturbed forest (CALref), conventional agriculture lands (CAL), reservoir riparian zones (RSRZ), river riparian zones (RRZ), and undisturbed riparian zones (RZref) in the Ganga River basin to study the C storage and emission trends at a landscape scale. The riparian soils showed higher moisture, temperature, and bulk density than the upland soils, strongly determining the spatial variations in the CO2 equivalent (CO2e), C:N ratio, and CO2 efflux. Riparian CO2e was more bulk density-dependent, while upland CO2e showed greater dependence on TOC. The C:N ratio showed a higher mean value in the reference soils (CALref and RZref) than in the other soils (P < 0.05). The total nitrogen (TN), total protein (TP), and NH4-N (ammonium‑nitrogen) showed the following trend: RSRZ > CAL > RRZ > RZref > CALref. The stepwise multiple regression models illustrated that soil moisture was the primary regulator of the C:N ratio and CO2 efflux in the upland soils while the temperature in the riparian soils. These intrinsic soil variables resulted in 1.15 to 2.26 times higher CO2 efflux from the cultivated soils (CAL, RSRZ, and RRZ) than from the reference soils. Hence, the present study revealed how agricultural practices tangibly increase the riparian system's carbon footprint while offering unsustainable livelihood options to farmers.