Transport Of Spores Research Articles

Moss spores: overlooked airborne bioparticles in an urban environment.

Moss spores are present in aerobiological samples, but their low representation, lack of known allergenic properties, and difficult identification have led to their being overlooked by aerobiologists so far. The data about their presence in the atmosphere and the factors that influence them are, however, important from the biodiversity conservation point of view, since they give us information about their ability to spread to new habitats. In this pilot study, we analysed their presence in the atmosphere of Bratislava city, Slovakia (2018-2023), using Burkard volumetric sampler, and determined the most significant factors influencing its temporal distribution. The size category of 13-18 µm was the most represented in the samples. Environmental factors influenced the daily spore concentrations and the characteristics of the whole spore season. The start of the Main Spore Season (MSS) depended mainly on the temperatures in November-January, initiating earlier growth of sporophytes in the following year, while the intensity of the MSS was influenced by high humidity in April, stimulating the formation of spores in sporangia. The daily concentration of airborne moss spores was mostly influenced by the actual temperature and wind speed, promoting the release and dispersal of spores, and precipitation lowering their levels due to the "wash-out" effect, although no intradiurnal pattern was observed. More data from other locations is needed to determine the role of atmospheric spore transport for the conservation of moss species facing anthropogenic climatic change.

Aerial dispersal of Venturia inaequalis ascospores with under-canopy sprinkler irrigation for apple scab management

AbstractSprinkler irrigation systems can release ascospores of Venturia inaequalis, the cause of apple scab, from infected leaves on the ground under conditions unsuitable for infection, and thus reducing the primary inoculum. Under-canopy irrigation was carried out for two hours in the middle of the day over overwintered apple leaves heavily infected with scab, either in a wind-protected enclosure or in a wind-exposed orchard. Ascospores were captured with rotating-arm spore traps at heights ranging from 0.3 m to 3.0 m above the ground. Ascospores dispersed above the irrigated layer and were detected at all heights above the sprinklers. Wind played a critical role in spore transport, evident from the set-up where wind interference was minimised by a wind fence, resulting in higher airborne spore numbers across all measured heights compared with the orchard exposed to unrestricted wind conditions. Furthermore, vertical temperature gradients significantly correlated with spore distributions, particularly where negative gradients at heights between 0.3 m and 0.05 m and positive gradients at heights between 1.0 m and 0.3 m led to spore retention within the irrigated zone. The findings highlight that ascospores, dispersed above the irrigated layers, could settle on susceptible tissues. It thus becomes imperative to ensure a rain-free period of at least 24 h post-irrigation and, if a rainfall shortly occurs after irrigation, the application of curative fungicides becomes essential following unexpected rain. Reliable weather forecasts are therefore crucial in determining the effectiveness of under-canopy irrigation to reduce apple scab incidence.

Fate and transport of viable Bacillus anthracis simulant spores in ambient air during a large outdoor decontamination field exercise

ABSTRACT The Wide Area Demonstration (WAD) was a field exercise conducted under the U.S. EPA’s Analysis of Coastal Operational Resiliency program, in conjunction with the U.S. Department of Homeland Security and the U.S. Coast Guard. The purpose of the WAD was to operationalize at field scale aspects of remediation activities that would occur following an outdoor release of Bacillus anthracis spores, including sampling and analysis, decontamination, data management, and waste management. The WAD was conducted in May 2022 at Fort Walker (formerly known as Fort A.P. Hill) and utilized Bacillus atrophaeus as a benign simulant for B. anthracis. B. atrophaeus spores were inoculated onto the study area at the beginning of the study, and air samples were collected daily during each of the different phases of the WAD using Dry Filter Units (DFUs). Ten DFU air samplers were placed at the perimeter of the study area to collect bioaerosols onto two parallel 47-mm diameter polyester felt filters, which were then subsequently analyzed in a microbiological laboratory for the quantification of B. atrophaeus. The study demonstrated the use of DFUs as a rugged and robust bioaerosol collection device. The results indicated that the highest B. atrophaeus spore air concentrations (up to ~ 5 colony forming units/m3) occurred at the beginning of the demonstration (e.g. during inoculation and characterization sampling phases) and generally downwind from the test site, suggesting transport of the spores was occurring from the study area. Very few B. atrophaeus spores were detected in the air after several weeks and following decontamination of exterior surfaces, thus providing an indication of the site decontamination procedures’ effectiveness. No B. atrophaeus spores were detected in any of the blank or background samples. Implications: Following an incident involving a release of Bacillus anthracis spores or other biological threat agent into the outdoor environment, understanding the factors that may affect the bioagent’s fate and transport can help predict viable contaminant spread via the ambient air. This paper provides scientific data for the first time on ambient air concentrations of bacterial spores over time and location during different phases of a field test in which Bacillus atrophaeus (surrogate for B. anthracis) spores were released outdoors as part of a full-scale study on sampling and decontamination in an urban environment. This study advances the knowledge related to the fate and transport of bacterial spores (such as those causing anthrax disease) as an aerosol in the outdoor environment over the course of three weeks in a mock urban environment and has exposure and health risk implications. The highest spore air concentrations occurred at the beginning of the study (e.g. during inoculation of surfaces and characterization sampling), and in the downwind direction, but diminished over time; few B. atrophaeus spores were detected in the air after several weeks and following decontamination. Therefore, in an actual incident, potential reaerosolization of the microorganism and subsequent transport in the air during surface sampling and remediation efforts should be considered for determining exclusion zone locations and estimating potential risk to neighboring communities. The data also provide evidence suggesting that the large-scale decontamination of outdoor surfaces may reduce air concentrations of the bioagent, which is important since exposure of B. anthracis via inhalation is a primary concern.

Evaluation of water treatments on surfaces to inhibit bacterial spore resuspension

AbstractThe impact of water and the wet–dry cycle was examined as a potential mitigation solution to pathogenic bacterial spore transport and inhalation risk via resuspension of spores from surfaces due to human activities. In this study, a fine mist of water was distributed onto a hydrophilic surface to represent conditions during a dew cycle or fog. Resuspension experiments were conducted on clean and dusty surfaces while they were wet and after drying. These resuspension results were directly compared to surfaces that had not been subjected to any surface water treatment to determine an absolute resuspension rate reduction ratio that could be treated as independent of resuspension technique. A minimum of a 3‐log reduction in resuspension was observed for dusty wet coupons and a maximum reduction of 4‐logs was observed after the clean coupons had dried. Water treatments have been demonstrated to inhibit spore resuspension under certain laboratory conditions while under an air‐generated shear stress similar in magnitude to shear forces generated by human interaction. This research has demonstrated that treating surfaces with water to inhibit spore resuspension could be a valuable tool in exposure minimization and remediation after a bioterrorism event.

A metapopulation framework integrating landscape heterogeneity to model an airborne plant pathogen: The case of brown rot of peach in France

Plant disease dynamics are driven by the concurrent interplay of host susceptibility, pathogen presence, and environmental conditions. While host susceptibility and environmental conditions can readily be characterized, the transmission of an airborne pathogen depends on the biotic and abiotic conditions of the surrounding environment. We propose an original metapopulation framework integrating landscape heterogeneity, in terms of climate and host density, where populations of plant hosts are connected via air-masses which allow pathogen dispersal. We explicitly account for climatic drivers affecting pathogen transport while modelling aerial dispersal using Lagrangian simulations, as well as host phenology and infection. We calibrate the model parameters according to the literature and using Approximate Bayesian Computation against observations of brown rot incidence in French peach orchards from 2001 to 2020 across an area of 50,000 km2. We use the model to produce maps of risk, distinguishing site dangerousness (risk of causing secondary infection in other sites) and vulnerability (risk of becoming infected) across the our study area. We demonstrate that airborne transport of Monilinia spores is essential in describing the spread of brown rot in French orchards in the considered period. We find that most dangerous and vulnerable sites are located along the Rhône Valley, due to the concurrence of high density of peach cultivation, a suitable climate and persistent airborne connections. Our work represents a first step to integrate metapopulation theory, epidemiology and air-mass movements to inform plant protection strategies at the national level. Furthermore, it could be adapted to optimize crop protection under future climate projections.

Assessing long-distance atmospheric transport of soilborne plant pathogens

Pathogenic fungi are a leading cause of crop disease and primarily spread through microscopic, durable spores adapted differentially for both persistence and dispersal via soil, animals, water, and/or the atmosphere. Computational Earth system models and air pollution models have been used to simulate atmospheric spore transport for aerial-dispersal-adapted (airborne) rust diseases, but the importance of atmospheric spore transport for soil-dispersal-adapted (soilborne) diseases remains unknown. While a few existing simulation studies have focused on intracontinental dispersion, transoceanic and intercontinental atmospheric transport of soilborne spores entrained in agricultural dust aerosols is understudied and may contribute to disease spread. This study adapts the Community Atmosphere Model, the atmospheric component of the Community Earth System Model, to simulate the global transport of the plant pathogenic soilborne fungus Fusarium oxysporum (F. oxy). Our sensitivity study assesses the model’s accuracy in long-distance aerosol transport and the impact of deposition rate on simulated long-distance spore transport in Summer 2020 during a major dust transport event from Northern Sub-Saharan Africa to the Caribbean and southeastern United States (U.S.). We find that decreasing wet and dry deposition rates by an order of magnitude improves representation of long-distance, trans-Atlantic dust transport. Simulations also suggest that a small number of spores can survive trans-Atlantic transport to be deposited in agricultural zones. This number is dependent on source spore parameterization, which we improved through a literature search to yield a global map of F. oxy spore distribution in source agricultural soils. Using this map and aerosol transport modeling, we show how potentially viable spore numbers in the atmosphere decrease with distance traveled and offer a novel danger index for modeled viable spore deposition in agricultural zones. Our work finds that intercontinental transport of viable spores to cropland is greatest between Eurasia, North Africa, and Sub-Saharan Africa, suggesting that future observational studies should concentrate on these regions.

Effect of prevailing winds and land use on Alternaria airborne spore load

Alternaria spores are a common component of the bioaerosol. Many Alternaria species are plant pathogens, and their conidia are catalogued as important aeroallergens. Several aerobiological studies showing a strong relationship between concentrations of airborne spore and meteorological parameters have consequently been developed. However, the Alternaria airborne load variation has not been thoroughly investigated because it is difficult to assess their sources, as they are a very common and widely established phytopathogen. The objective of this study is to estimate the impact of vegetation and land uses as potential sources on airborne spore load and to know their influence, particularly, in cases of long-medium distance transport. The daily airborne spore concentration was studied over a 5-year period in León and Valladolid, two localities of Castilla y León (Spain), with differences in their bioclimatic and land use aspects. Moreover, the land use analysis carried out within a 30 km radius of each monitoring station was combined with air mass data in order to search for potential emission sources. The results showed a great spatial variation between the two areas, which are relatively close to each other. The fact that the spore concentrations recorded in Valladolid were higher than those in León was owing to prevailing winds originating from large areas covered by cereal crops, especially during the harvest period. However, the prevailing winds in León came from areas dominated by forest and shrubland, which explains the low airborne spore load, since the main Alternaria sources were the grasslands located next to the trap. Furthermore, the risk days in this location presented an unusual wind direction. This study reveals the importance of land cover and wind speed and direction data for establishing potential airborne routes of spore transport in order to improve the Alternaria forecasting models. The importance of conducting Alternaria aerobiological studies at a local level is also highlighted.

Transport and removal of spores of Bacillus subtilis in an alluvial gravel aquifer at varying flow rates and implications for setback distances

To guarantee proper protection from fecally transmitted pathogen infections, drinking water wells should have a sufficiently large setback distance from potential sources of contamination, e.g. a nearby river. The aim of this study was to provide insight in regards to microbial contamination of groundwater under different flow velocities, which can vary over time due to changes in river stage, season or pumping rate. The effects of these changes, and how they affect removal parameters, are not completely understood. In this study, field tracer tests were carried out in a sandy gravel aquifer near Vienna, Austria to evaluate the ability of subsurface media to attenuate Bacillus subtilis spores, used as a surrogate for Cryptosporidium and Campylobacter. The hydraulic gradient between injection and extraction was controlled by changing the pumping rate (1, 10 l/s) of a pumping well at the test site, building upon previously published work in which tracer tests with a 5 l/s pumping rate were carried out. Attachment and detachment rate coefficients were determined using a HYDRUS-3D model and ranged from 0.12 to 0.76 and 0–0.0013 h−1, respectively. Setback distances were calculated based on the 60-day travel time, as well as a quantitative microbial risk assessment (QMRA) approach, which showed similar results at this site; around 700 m at the highest pumping rate. Removal rates (λ) in the field tests ranged from 0.2 to 0.3 log/m, with lower pumping rates leading to higher removal. It was shown that scale must be taken into consideration when determining λ for the calculation of safe setback distances.

Phase-change-mediated transport and agglomeration of fungal spores on wheat awns.

Wheat and other staple crops are devastated by fungal diseases. Many fungal plant pathogens are spread via active or passive discharge of microscopic spores. Here, we described the unique transport of spores of the fungal pathogen Epicoccum tritici, causal agent of black sooty mould, on wheat awns. The unique multi-scale architecture of wheat awns, coupled with condensation and evaporation of dew droplets, facilitated the transport and agglomeration of spores of the fungus. First, dew droplets spontaneously transported spores from the tips of awn hairs to the neighbouring stomatal ridges, driven by gradients in Laplace pressure and surface wettability. Subsequently, spores agglomerated into dry clusters due to the Cheerios effect and evaporation, increasing the likelihood of passive spore removal via wind shear and/or rainsplash. Future plant breeding approaches should consider the development of modified spike structures, such as those without awns or awn hairs, to reduce the potential for spread of fungal plant pathogens.

Fungal spore transport by omnivorous mycophagous slug in temperate forest.

Slugs are important consumers of fungal fruiting bodies and expected to carry their spores. In this study, we examined whether slugs (Meghimatium fruhstorferi) can act as effective dispersers of spores of basidiomycetes. The microscopic observation confirmed the presence of basidiospores in feces of field‐collected slugs, and the DNA metabarcoding study revealed that Ascomycota and Basidiomycota were major fungal taxa found in the feces. In Basidiomycota, the dominant order was Agaricales followed by Trichosporonales and Hymenochaetales. The laboratory experiments using Tylopilus vinosobrunneus showed that slugs carried a large number of spores in their digestive tracts. It was also observed that Pleurotus, Armillaria, and Gymnopilus spores excreted by slugs had a higher germination capacity than control spores collected from spore prints. The field experiments showed that slugs traveled 10.3 m in 5 h at most by wandering on the ground, litter layers, wood debris, and tree trunks. These results suggest that slugs could carry spores of ectomycorrhizal, saprophytic, and wood‐decaying fungi to appropriate sites for these fungi to establish colonies.

Transport and Retention of Free-Living Amoeba Spores in Porous Media: Effects of Operational Parameters and Extracellular Polymeric Substances.

Amoebas are protists that are widespread in water and soil environments. Some species are pathogenic, inducing potentially lethal effects on humans, making them a major threat to public health. Nonpathogenic amoebas are also of concern because they have the potential to carry a mini-microbiome of bacteria, either transiently or via more long-term stable transport. Due to their resistance to disinfection processes, the physical removal of amoeba by filtration is necessary to prevent their propagation throughout drinking water distribution networks and occurrence in tap water. In this study, a model amoeba species Dictyostelium discoideum was used to study the transport and retention behavior of amoeba spores in porous media. The key factors affecting the transport behavior of amoeba spores in fully saturated media were comprehensively evaluated, with experiments performed using a quartz crystal microbalance with dissipation monitoring (QCM-D) and parallel plate chamber system. The effects of ionic strength (IS) on the deposition of spores were found to be in contrast to the predicted Derjaguin-Landau-Verwey-Overbeek (DLVO) theory that more deposition is observed under lower-IS conditions. The presence of extracellular polymeric substances (EPS) was found to be the main contributor to deposition behavior. Overall, these results provide plausible evidence for the presence of amoeba in tap water. Furthermore, this is one of the first studies to examine the mechanisms affecting the fate of amoeba spores in porous media, providing a significant baseline for future research to minimize the safety risk presented by amoeba in drinking water systems.

Drivers of the fungal spore bioaerosol budget: observational analysis and global modeling

Abstract. Bioaerosols are produced by biological processes and directly emitted into the atmosphere, where they contribute to ice nucleation and the formation of precipitation. Previous studies have suggested that fungal spores constitute a substantial portion of the atmospheric bioaerosol budget. However, our understanding of what controls the emission and burden of fungal spores on the global scale is limited. Here, we use a previously unexplored source of fungal spore count data from the American Academy of Allergy, Asthma, and Immunology (AAAAI) to gain insight into the drivers of their emissions. First, we derive emissions from observed concentrations at 66 stations by applying the boundary layer equilibrium assumption. We estimate an annual mean emission of 62 ± 31 m−2 s−1 across the USA. Based on these pseudo-observed emissions, we derive two models for fungal spore emissions at seasonal scales: a statistical model, which links fungal spore emissions to meteorological variables that show similar seasonal cycles (2 m specific humidity, leaf area index and friction velocity), and a population model, which describes the growth of fungi and the emission of their spores as a biological process that is driven by temperature and biomass density. Both models show better skill at reproducing the seasonal cycle in fungal spore emissions at the AAAAI stations than the model previously developed by Heald and Spracklen (2009) (referred to as HS09). We implement all three emissions models in the chemical transport model GEOS-Chem to evaluate global emissions and burden of fungal spore bioaerosol. We estimate annual global emissions of 3.7 and 3.4 Tg yr−1 for the statistical model and the population model, respectively, which is about an order of magnitude lower than the HS09 model. The global burden of the statistical and the population model is similarly an order of magnitude lower than that of the HS09 model. A comparison with independent datasets shows that the new models reproduce the seasonal cycle of fluorescent biological aerosol particle (FBAP) concentrations at two locations in Europe somewhat better than the HS09 model, although a quantitative comparison is hindered by the ambiguity in interpreting measurements of fluorescent particles. Observed vertical profiles of FBAP show that the convective transport of spores over source regions is captured well by GEOS-Chem, irrespective of which emission scheme is used. However, over the North Atlantic, far from significant spore sources, the model does not reproduce the vertical profiles. This points to the need for further exploration of the transport, cloud processing and wet removal of spores. In addition, more long-term observational datasets are needed to assess whether drivers of seasonal fungal spore emissions are similar across continents and biomes.

Intermicrobial Hitchhiking: How Nonmotile Microbes Leverage Communal Motility.

Motility allows many microbes to traverse their environment to find nutrient sources or escape unfavorable environments. However, some microbes are nonmotile and are restricted to their immediate conditions. Intriguingly, sporadic reports have demonstrated that many nonmotile microbes can utilize the motility machinery of other microbes in their vicinity. This form of transportation, called hitchhiking, has been observed with both prokaryotic and eukaryotic microbes. Importantly, many hitchhiking microbes are pathogenic to humans or plants. Here, we discuss reports of intermicrobial hitchhiking to generate a comprehensive view of hitchhiking mechanisms and how such interactions may influence human and plant health. We hypothesize that microbial hitchhiking is ubiquitous in nature and may become the subject of an independent subfield of research in microbiology.

Laboratory results and mathematical modeling of spore surface interactions in stormwater runoff

Development of numerical models to predict stormwater-mediated transport of pathogenic spores in the environment depends on an understanding of adhesion forces that dictate detachment after rain events. Zeta potential values were measured in the laboratory for Bacillus globigii and Bacillus thuringiensis kurstaki, two common surrogates used to represent Bacillus anthracis, in synthetic baseline ultrapure water and laboratory prepared stormwater. Zeta potential curves were also determined for materials representative of urban infrastructure (concrete and asphalt). These data were used to predict the interaction energy between the spores and urban materials using Derjaguin-Landau-Verwey-Overbeek (DLVO) modeling. B. globigii and B. thuringiensis kurstaki sourced from Yakibou Inc., were found to have similar zeta potential curves, whereas spores sourced from the U.S. military's Dugway laboratory were found to diverge. In the ultrapure water, the modeling results use the laboratory data to demonstrate that the energy barriers between the spores and the urban materials were tunable through compression of the electrical double layer of the spores via changes of ionic strength and pH of the water. In the runoff water, charge neutralization dominated surface processes. The cations, metals, and natural organic matter (NOM) in the runoff water contributed to equalizing the zeta potential values for Dugway B. globigii and B. thuringiensis kurstaki, and drastically modified the surface of the concrete and asphalt. All DLVO energy curves using the runoff water were repulsive. The highest energy barrier predicted in this study was for Dugway B. globigii spores interacting with a concrete surface in runoff water, suggesting that this would be the most challenging combination to detach through water-based decontamination.

Pollen spectra of Polar Ural glaciers

The subject of this article is the pollen spectra of the samples from the surface of Romantic's Glacier, located in the Polar Urals in the Rai-Iz mountain range, as well as generalization of the results of published studies dedicated to glaciers of the Urals. The author also examines the pollen spectra of massive ice, which can be attributed to ice of atmospheric origin on the basis of similarity with the pollen spectra obtained from the surface of the glacier. The article reviews climatic peculiarities of the Polar Urals due to the existence of glaciers below the snow line, namely the landscapes of the Polar Urals, including vegetation as a source of pollen and spores falling onto the surface of glaciers of the Polar Urals, as well as possibility of distant pollen drift to the surface of Romantic’s Glacier. The main result consists in the conclusion that the composition pollen spectra of the Romantic’s Glacier in the Rai-Iz mountainous area is mainly determined by the long-range transport of pollen and spores from the western and south-western regions in a latitude direction. The pollen spectra obtained from the surface of the Romantic’s Glacier are characterized by significant presence of various pollen from broad-leaved rocks of lip, maple, oak, and hazel. Pine pollen and high forest birch are prevalent. Local vegetation is very poor. However, the pollen spectra indicates pollen of heath and crowfoot family, and grasses.

POWIĄZANIA POMIĘDZY GRZYBAMI PODZIEMNYMI A MAŁYMI SSAKAMI

Grzyby podziemne charakteryzuje proces tworzenia i dojrzewania zarodników przebiegający w obrębie gasteroidalnych (zamkniętych) owocników pod powierzchnią ziemi. Cecha ta powstała niezależnie u przedstawicieli gromad Ascomycota, Basidiomycota i Mucoromycota. Zarodniki grzybów podziemnych rozprzestrzeniane są przez organizmy wektorowe, np. gryzonie. Owocniki stanowią często dla zwierząt ważne uzupełnienie diety lub jej główny element, dostarczając zwierzętom substancje takie jak woda, białka, tłuszcze, witaminy czy związki o charakterze prozdrowotnym. Grzyby podziemne w większości tworzą związki ektomikoryzowe, głównie z drzewami. Ich relacje ze zwierzętami mają więc wpływ na rozpropagowanie inokulum mikoryzowego tych grzybów nie tylko w środowisku leśnym ale również na terenach bezleśnych. W zależności te włączone są również drapieżniki, które, żywiąc się mykofagicznymi ssakami, biorą udział w dalekim transporcie zarodników. Istnienie ścisłych relacji pomiędzy grzybami podziemnymi a konsumującymi je gryzoniami a także drapieżnikami oraz drzewami ektomikoryzowymi, tworzy sieć zależności ekologicznych pomiędzy ewolucyjnie odległymi od siebie organizmami.

Predicting the risk of cucurbit downy mildew in the eastern United States using an integrated aerobiological model.

Cucurbit downy mildew caused by the obligate oomycete, Pseudoperonospora cubensis, is considered one of the most economically important diseases of cucurbits worldwide. In the continental United States, the pathogen overwinters in southern Florida and along the coast of the Gulf of Mexico. Outbreaks of the disease in northern states occur annually via long-distance aerial transport of sporangia from infected source fields. An integrated aerobiological modeling system has been developed to predict the risk of disease occurrence and to facilitate timely use of fungicides for disease management. The forecasting system, which combines information on known inoculum sources, long-distance atmospheric spore transport and spore deposition modules, was tested to determine its accuracy in predicting risk of disease outbreak. Rainwater samples at disease monitoring sites in Alabama, Georgia, Louisiana, New York, North Carolina, Ohio, Pennsylvania and South Carolina were collected weekly from planting to the first appearance of symptoms at the field sites during the 2013, 2014, and 2015 growing seasons. A conventional PCR assay with primers specific to P. cubensis was used to detect the presence of sporangia in rain water samples. Disease forecasts were monitored and recorded for each site after each rain event until initial disease symptoms appeared. The pathogen was detected in 38 of the 187 rainwater samples collected during the study period. The forecasting system correctly predicted the risk of disease outbreak based on the presence of sporangia or appearance of initial disease symptoms with an overall accuracy rate of 66 and 75%, respectively. In addition, the probability that the forecasting system correctly classified the presence or absence of disease was ≥ 73%. The true skill statistic calculated based on the appearance of disease symptoms in cucurbit field plantings ranged from 0.42 to 0.58, indicating that the disease forecasting system had an acceptable to good performance in predicting the risk of cucurbit downy mildew outbreak in the eastern United States.

Large-Scale Atmospheric Dispersal Simulations Identify Likely Airborne Incursion Routes of Wheat Stem Rust Into Ethiopia.

In recent years, severe wheat stem rust epidemics hit Ethiopia, sub-Saharan Africa's largest wheat-producing country. These were caused by race TKTTF (Digalu race) of the pathogen Puccinia graminis f. sp. tritici, which, in Ethiopia, was first detected at the beginning of August 2012. We use the incursion of this new pathogen race as a case study to determine likely airborne origins of fungal spores on regional and continental scales by means of a Lagrangian particle dispersion model (LPDM). Two different techniques, LPDM simulations forward and backward in time, are compared. The effects of release altitudes in time-backward simulations and P. graminis f. sp. tritici urediniospore viability functions in time-forward simulations are analyzed. Results suggest Yemen as the most likely origin but, also, point to other possible sources in the Middle East and the East African Rift Valley. This is plausible in light of available field surveys and phylogenetic data on TKTTF isolates from Ethiopia and other countries. Independent of the case involving TKTTF, we assess long-term dispersal trends (>10 years) to obtain quantitative estimates of the risk of exotic P. graminis f. sp. tritici spore transport (of any race) into Ethiopia for different 'what-if' scenarios of disease outbreaks in potential source countries in different months of the wheat season.

Spread of proliferative kidney disease in fish along stream networks: A spatial metacommunity framework

Abstract Proliferative kidney disease (PKD) is a high‐mortality pathology that critically affects freshwater salmonid populations. Infection is caused by the endoparasitic myxozoan Tetracapsuloides bryosalmonae, which exploits freshwater bryozoans as primary hosts. Incidence and severity of PKD have recently increased, largely owing to rising water temperatures linked to climate change, causing a decline in fish catches and local extinctions in many river systems. Here, building on a recently proposed local model of PKD transmission, a spatially explicit metacommunity framework is developed to study the spatial effects of the disease spread in idealised stream networks. At the local community scale, the model accounts for demographic and epidemiological dynamics of bryozoan and fish populations. At the network scale, the model couples the dynamics of each local community through hydrological transport of parasite spores and fish movement. The model also explicitly accounts for heterogeneity in habitat characteristics and hydrological conditions along a river network. Network effects are investigated by running simulation experiments on synthetic river network replicas derived from Optimal Channel Networks, spanning trees known to reproduce all the mutually connected topological and metric features of real rivers. Network connectivity can produce heterogeneous patterns of PKD prevalence even when the underlying spatial distributions of fish and bryozoans are homogeneous. Prevalence is generally higher at the downstream sites: if fish mobility is neglected, the spatial distribution of prevalence follows that of the upstream drainage area; otherwise, prevalence patterns are correlated with the proximity to the outlet. Downstream invasion speed of PKD is generally high, due to the fast dynamics of hydrological spore transport. For the tested values, effects of water temperature on prevalence heterogeneity are minor. However, climate change may increase invasion speed in both downstream and upstream directions. PKD can establish in bryozoan‐free river reaches, on the condition that the infection be sustained by upstream or downstream hot‐spots. These results further our understanding of the drivers of fish distribution in riverine ecosystems and may provide the basis for the development of intervention and management tools, especially facing climate change.

Pearls in Infection Control for Clostridium difficile Infections in Healthcare Facilities

Prevention of Clostridium difficile infection (CDI) is a complex task; adequate and sustained success is difficult to obtain. Focus on prevention has to start by analyzing the targeted patient population; the most important risk factors for development of CDI are previous exposure to antibiotics, hospitalization and advanced age. Thus, limiting antibiotic exposure and over exposure with an antibiotic stewardship program that employs combined strategies reducing the number of doses and spectrum is essential. Reducing hospital exposure by ambulatory care and short-stay procedures aids in this task, but, when hospitalized, patients rely solely on healthcare personnel commitment to hand hygiene to reduce transport of spores, and on environmental staff for providing a safe environment by proper decontamination of hospital surfaces and equipment. Age as a risk factor is not modifiable, but what is modifiable is the environment where elderly patients are cared for, in which individual rooms and proper disposal of bed pans, diapers and toilet disinfection are fundamental. Using contact precautions limits dissemination of potential infecting spores by reducing carriage to uninfected patients on hands and clothes of healthcare personnel. Probiotics studies are continuously providing more robust information on their role in primary and secondary prevention and are now more frequently used in hospitals. Vaccination will play a strong role in the near future by targeting key patients who are likely to be continuously exposed to a healthcare environment. A summarized message and approach of this text is shown in Table 1.