Abstract. Super-resolution atmospheric modelling can be used to interpret and optimize environmental observations during top-down emission rate retrieval campaigns (e.g. aircraft-based) by providing complementary data that closely correspond to real-world atmospheric pollution transport and dispersion conditions. For this work, super-resolution model simulations with large-eddy-simulation sub-grid-scale parameterization were developed and implemented using WRF-ARW (Weather Research and Forecasting - Advanced Research WRF). We demonstrate a series of best practices for improved (realistic) modelling of atmospheric pollutant dispersion at super-resolutions. These include careful considerations for grid quality over complex terrain, sub-grid turbulence parameterization at the scale of large eddies, and ensuring local and global tracer mass conservation. The study objective was to resolve small dynamical processes inclusive of spatio-temporal scales of high-speed (e.g. 100 m s−1) airborne measurements. This was achieved by downscaling of reanalysis data from 31.25 km to 50 m through multi-domain model nesting in the horizontal and grid-refining in the vertical. Further, WRF dynamical-solver source code was modified to simulate the release of passive tracers within the finest-resolution domain. Different meteorological case studies and several tracer source emission scenarios were considered. Model-generated fields were evaluated against observational data (surface monitoring network and aircraft campaign data) and also in terms of tracer mass conservation. Results indicated agreement between modelled and observed values within 5 ∘C for temperature, 1 %–25 % for relative humidity, and 1–2 standard deviations for wind fields. Model performance in terms of (global and local) tracer mass conservation was within 2 % to 5 % of model input emissions. We found that, to ensure mass conservation within the modelling domain, tracers should be released on a regular-resolution grid (vertical and horizontal). Further, using our super-resolution modelling products, we investigated emission rate estimations based on flux calculation and mass-balancing. Our results indicate that retrievals under weak advection conditions (horizontal wind speeds < 5 m s−1) are not reliable due to weak correlation between the source emission rate and the downwind tracer mass flux. In this work we demonstrate the development of accurate super-resolution model simulations useful for planning, interpreting, and optimizing top-down retrievals, and we discuss favourable conditions (e.g. meteorological) for reliable mass-balance emission rate estimations.