Inorganic Carbon Transport Research Articles

Alkalinity and dissolved inorganic carbon exports from tropical and subtropical river catchments discharging to the Great Barrier Reef, Australia

AbstractDissolved inorganic carbon (DIC) transport by rivers is an important control on the pH and carbonate chemistry of the coastal ocean. Here, we combine DIC and total alkalinity (TAlk) concentrations from four tropical rivers of the Great Barrier Reef region in Australia with daily river discharge to quantify annual river loads and export rates. DIC in the four rivers ranged from 284 to 2,639 μmol kg−1 and TAlk ranged from 220 to 2,612 μmol kg−1. DIC:TAlk ratios were mostly greater than one suggesting elevated exports of free [CO2*]. This was pronounced in the Johnstone and Herbert rivers of the tropical wet north. The largest annual loads were transported in the two large river catchments of the southern Great Barrier Reef region, the Fitzroy and Burdekin rivers. The carbon stable isotopic composition of DIC suggests that carbonate weathering was the dominant source of DIC in the southern rivers, and silicate weathering was likely a source of DIC in the northern Wet Tropics rivers. Annual loads and export rates were strongly driven by precipitation and discharge patterns, the occurrence of tropical cyclones, and associated flooding events, as well as distinct seasonal dry and wet periods. As such, short‐lived hydrological events and long‐term (seasonal and inter‐annual) variation of DIC and TAlk that are pronounced in rivers of the tropical and subtropical wet and dry climate zone should be accounted for when assessing inorganic carbon loads to the coastal ocean and the potential to buffer against or accelerate ocean acidification.

Understanding the inorganic carbon transport and carbon dioxide evasion in groundwater with multiple sulfate sources during different seasons using isotope records

The geochemical cycle of carbon under anthropogenic activities controls the transport of carbon between surface sediments, hydrosphere and atmosphere, especially for atmospheric and marine carbon dioxide. Currently, the anthropogenically-induced carbon cycle in groundwater is an important part of the cycle in inland waters and cannot be underestimated as a geochemical process affecting the global carbon cycle. Therefore, there is a need to conduct deep research using isotopes in which the isotopic mixing and fractionation response to the carbon cycle can be assessed. The results showed that the δ34S-SO42− and δ18O-SO42− values in groundwater inherited the isotopic characteristics of four sulfate sources and shifted from acid mine drainage (AMD) derived from pyrite oxidation to atmospheric sulfates and agricultural fertilizers as well as domestic sewage along the groundwater flow path. In particular, the evolution of sulfate sources was accompanied by changes in the δ13C-DIC values in different seasons. During the dry season, the Rayleigh function described a possibility of enriched δ13C-DIC values in an AMD-affected aquifer, where a dropping water table or decreasing water content in unsaturated zones provided favorable acid buffering conditions. Bicarbonate neutralized protons to CO2 that was in turn spilled over the water surface. During the wet season, the depleted δ13C-DIC values in the AMD-affected aquifer reflected another possibility of the carbon cycle in which a rising water table caused a similar closed system to some extent and slowed down the replenishment of bicarbonate so that δ13C-DIC almost recorded the δ13C of soil CO2. In spite of the same AMD source, their influences on the carbon cycle in the dry and wet seasons were CO2 evasion and deficient CO2 uptake, respectively. By contrast, regardless of the season, the carbon cycle gradually shifted towards a net consumption of CO2 in the aquifer with atmospheric and agricultural sulfates as well as domestic sewage, and δ13C-DIC inherited the characteristic of HCO3−, indicating that these sources in anthropogenically-induced carbon processes hardly involved in isotopic fractionation of δ13C-DIC.

Climatic and anthropogenic regulation of carbon transport and transformation in a karst river-reservoir system

The effect of dams on dissolved inorganic carbon (DIC) transport and riverine ecosystems is unclear in karst cascade reservoirs. Here, we analyzed water samples from a karst river system with seven cascade reservoirs along the Wujiang River, southwestern China, during one hydrological year. From upstream to downstream, the average concentration of DIC increased from 2.2 to 2.6 mmol/L and its carbon isotope composition (δ13CDIC) decreased from −8.0 to −10‰. Meanwhile, the air temperature (Ta) increased from 20.3 °C to 26.7 °C and 10 °C to 13.7 °C in the warm and cold seasons, respectively. The results suggest that a cascade of dams has a stronger effect on DIC dynamics and retention than a single dam. The good correlation between Ta/HRT (hydraulic retention time) and Δ[DIC] as well as Δ[δ13CDIC] mean that Ta and HRT affected the magnitude of the damming effect by altering changes in concentration of DIC and δ13CDIC in the reservoir compared to the inflowing water. In particular, daily regulated reservoirs with short retention times acted more like river corridors and had a smaller effect on carbon dynamics, so modulating retention time might be used reduce the effect of dams on the riverine ecosystem.

Structural Basis for the Allosteric Regulation of the SbtA Bicarbonate Transporter by the PII-like Protein, SbtB, from Cyanobium sp. PCC7001.

Cyanobacteria have evolved a suite of enzymes and inorganic carbon (Ci) transporters that improve photosynthetic performance by increasing the localized concentration of CO2 around the primary CO2-fixating enzyme, Rubisco. This CO2-concentrating mechanism (CCM) is highly regulated, responds to illumination/darkness cycles, and allows cyanobacteria to thrive under limiting Ci conditions. While the transcriptional control of CCM activity is well understood, less is known about how regulatory proteins might allosterically regulate Ci transporters in response to changing conditions. Cyanobacterial sodium-dependent bicarbonate transporters (SbtAs) are inhibited by PII-like regulatory proteins (SbtBs), with the inhibitory effect being modulated by adenylnucleotides. Here, we used isothermal titration calorimetry to show that SbtB from Cyanobium sp. PCC7001 (SbtB7001) binds AMP, ADP, cAMP, and ATP with micromolar-range affinities. X-ray crystal structures of apo and nucleotide-bound SbtB7001 revealed that while AMP, ADP, and cAMP have little effect on the SbtB7001 structure, binding of ATP stabilizes the otherwise flexible T-loop, and that the flexible C-terminal C-loop adopts several distinct conformations. We also show that ATP binding affinity is increased 10-fold in the presence of Ca2+, and we present an X-ray crystal structure of Ca2+ATP:SbtB7001 that shows how this metal ion facilitates additional stabilizing interactions with the apex of the T-loop. We propose that the Ca2+ATP-induced conformational change observed in SbtB7001 is important for allosteric regulation of SbtA activity by SbtB and is consistent with changing adenylnucleotide levels in illumination/darkness cycles.

MpsAB is important for Staphylococcus aureus virulence and growth at atmospheric CO2 levels

The mechanisms behind carbon dioxide (CO2) dependency in non-autotrophic bacterial isolates are unclear. Here we show that the Staphylococcus aureus mpsAB operon, known to play a role in membrane potential generation, is crucial for growth at atmospheric CO2 levels. The genes mpsAB can complement an Escherichia coli carbonic anhydrase (CA) mutant, and CA from E. coli can complement the S. aureus delta-mpsABC mutant. In comparison with the wild type, S. aureus mps mutants produce less hemolytic toxin and are less virulent in animal models of infection. Homologs of mpsA and mpsB are widespread among bacteria and are often found adjacent to each other on the genome. We propose that MpsAB represents a dissolved inorganic carbon transporter, or bicarbonate concentrating system, possibly acting as a sodium bicarbonate cotransporter.

Selective transport of soil organic and inorganic carbon in eroded sediment in response to raindrop sizes and inflow rates in rainstorms

The soil carbon (C) reservoir involves soil organic and inorganic carbon stocks. The influence of soil erosion processes on soil organic carbon (SOC) migration has been investigated in the literature, but the influence on soil inorganic carbon (SIC) remains uncertain. Variations in the proportion of SOC and SIC in eroded sediment can influence C cycling, so we conducted a detailed laboratory study to investigate the selective transport of SOC and SIC in eroded sediment in treatments with different raindrop sizes and inflow rates. We used the boosted regression trees (BRT) models to estimate the SOC and SIC contents according to the ratio of flow depth and raindrop diameter (h/D), the maximum shear stress (τ*max), the runoff rate, the stream power (ω), the sediment concentration (SC), the soil loss rate (SLR), and various particle-related factors, including D50, D[4,3], D[3,2], clay content, silt content and sand content of non-dispersed sediment. The BRT model explained 42.1% and 56.1% of the variation in the SOC and SIC contents in the sediment, respectively. The relative importance of particle-related factors was approximately 50%, demonstrating that the particle size distribution (PSD) of sediment was a crucial factor for both SOC and SIC transport. The SOC content was sensitive to the presence of fine particles, while the SIC content was largely determined by coarse particles because smaller particles with a higher specific surface area tended to adsorb more SOC whereas coarser particles contained more carbonates in the form of binding agents. In sediment under intensive rainfall on steep slopes, the SOC tended to be depleted, while the SIC was slightly enriched. Our study demonstrates that both SIC and SOC were selectively transported by water erosion and fills gaps in this field of research. Moreover, this work implies that the PSD of the sediment provides important information about the variation in SOC and SIC and should be considered when modelling the global C cycle.

Comparison of the Sulfonamide Inhibition Profiles of the α-Carbonic Anhydrase Isoforms (SpiCA1, SpiCA2 and SpiCA3) Encoded by the Genome of the Scleractinian Coral Stylophora pistillata.

The ubiquitous metalloenzymes carbonic anhydrases (CAs, EC 4.2.1.1) are responsible for the reversible hydration of CO2 to bicarbonate (HCO3−) and protons (H+). Bicarbonate may subsequently generate carbonate used in many functional activities by marine organisms. CAs play a crucial role in several physiological processes, e.g., respiration, inorganic carbon transport, intra and extra-cellular pH regulation, and bio-mineralization. Multiple transcript variants and protein isoforms exist in the organisms. Recently, 16 α-CA isoforms have been identified in the coral Stylophora pistillata. Here, we focalized the interest on three coral isoforms: SpiCA1 and SpiCA2, localized in the coral-calcifying cells; and SpiCA3, expressed in the cytoplasm of the coral cell layers. The three recombinant enzymes were heterologously expressed and investigated for their inhibition profiles with sulfonamides and sulfamates. The three coral CA isoforms differ significantly in their susceptibility to inhibition with sulfonamides. This study provides new insights into the coral physiology and the comprehension of molecular mechanisms involved in the bio-mineralization processes, since CAs interact with bicarbonate transporters, accelerating the trans-membrane bicarbonate movement and modulating the pH at both sides of the plasma membranes.

Synthetic biology approaches for improving photosynthesis.

The phenomenal increase in agricultural yields that we have witnessed in the last century has slowed down as we approach the limits of selective breeding and optimization of cultivation techniques. To support the yield increase required to feed an ever-growing population, we will have to identify new ways to boost the efficiency with which plants convert light into biomass. This challenge could potentially be tackled using state-of-the-art synthetic biology techniques to rewrite plant carbon fixation. In this review, we use recent studies to discuss and demonstrate different approaches for enhancing carbon fixation, including engineering Rubisco for higher activity, specificity, and activation; changing the expression level of enzymes within the Calvin cycle to avoid kinetic bottlenecks; introducing carbon-concentrating mechanisms such as inorganic carbon transporters, carboxysomes, and C4 metabolism; and rewiring photorespiration towards more energetically efficient routes or pathways that do not release CO2. We conclude by noting the importance of prioritizing and combining different approaches towards continuous and sustainable increase of plant productivities.

Upwelling of Macronutrients and Dissolved Inorganic Carbon by a Subglacial Freshwater Driven Plume in Bowdoin Fjord, Northwestern Greenland

AbstractIn Greenland, tidewater glaciers discharge turbid subglacial freshwater into fjords, forming a plume near the calving front. To elucidate the effects of this discharge on nutrient and dissolved inorganic carbon transport to the surface in these fjords, we conducted observational studies on Bowdoin Glacier and in its fjord in northwestern Greenland during the summer of 2016. Our results provide evidence of macronutrient and dissolved inorganic carbon transport from deep in the fjord to the surface in front of the glacier. This transport is driven by plume formation resulting from subglacial freshwater discharge and subsequent upwelling along the glacier calving front. The plume water is a mixture of subglacial freshwater and entrained fjord water. The fraction of glacial meltwater in the plume water is ~14% when it reaches the surface. The plume water is highly turbid because it contains substantial amounts of sediment derived from subglacial weathering. After reaching the surface, the plume water submerges and forms a turbid subsurface layer below fresher surface water at densities of 25.0 to 26.5 σθ. Phytoplankton blooms (~6.5 μg/L chlorophyll a) were observed near the boundary between the fresher surface and turbid subsurface layers. The bloom was associated with a strong upward NO3− + NO2− flux, which was caused by the subduction of plume water. Our study demonstrated that the subglacial discharge and plume formation at the front of Bowdoin Glacier play a key role in the availability of nutrients and the subsequent growth of phytoplankton in the glaciated fjord.

Intraspecific variation in the response of the scleractinian coral Acropora digitifera to ocean acidification

To examine the possible variation in responses of corals to ocean acidification (OA) among populations, we compared the sensitivity of two Okinawan populations (Sesoko and Bise) of the scleractinian coral Acropora digitifera to high pCO2. We found that both light and dark calcification rates of Sesoko corals did not change with an increase in seawater pCO2, while the calcification rates of Bise corals significantly decreased. Additionally, calcification rate of Sesoko corals was significantly lower than Bise corals at control conditions. Expressions of two putative calcification-related genes (BAT: bicarbonate transporter and galaxin) were up-regulated at high CO2 compared to the control and expression of the BAT gene was significantly higher in Sesoko compared to Bise corals. Consequently, differences in the calcification rate between populations and differences in the expression of genes related to inorganic carbon transport regulation could be reasons that explain the difference in the response to OA between the two populations. Furthermore, taking into account that Sesoko corals were located in relatively nearshore areas where the environmental conditions are more variable, while Bise corals were located in the forereef which shows more stable conditions, plasticity for coral calcification in response to different environmental conditions and/or acclimation response to changes such as seawater pCO2 may lead to differences in sensitivity between the two populations to high seawater pCO2. Studies considering the potential variability in corals sensitivity to OA among local populations from different habitats are important to predict the potential effects of climate change on reef ecosystems.

High-resolution suborganellar localization of Ca2+-binding protein CAS, a novel regulator of CO2-concentrating mechanism.

Many aquatic algae induce a CO2-concentrating mechanism (CCM) associated with active inorganic carbon transport to maintain high photosynthetic affinity using dissolved inorganic carbon even in low-CO2 (LC) conditions. In the green alga Chlamydomonas reinhardtii, a Ca2+-binding protein CAS was identified as a novel factor regulating the expression of CCM-related proteins including bicarbonate transporters. Although previous studies revealed that CAS associates with the thylakoid membrane and changes its localization in response to CO2 and light availability, its detailed localization in the chloroplast has not been examined in vivo. In this study, high-resolution fluorescence images of CAS fused with a Chlamydomonas-adapted fluorescence protein, Clover, were obtained by using a sensitive hybrid detector and an image deconvolution method. In high-CO2 (5% v/v) conditions, the fluorescence signals of Clover displayed a mesh-like structure in the chloroplast and part of the signals discontinuously overlapped with chlorophyll autofluorescence. The fluorescence signals gathered inside the pyrenoid as a distinct wheel-like structure at 2h after transfer to LC-light condition, and then localized to the center of the pyrenoid at 12h. These results suggest that CAS could move in the chloroplast along the thylakoid membrane in response to lowering CO2 and gather inside the pyrenoid during the operation of the CCM.

Carbonic anhydrase 2-like in the giant clam, Tridacna squamosa: characterization, localization, response to light, and possible role in the transport of inorganic carbon from the host to its symbionts.

The fluted giant clam, Tridacna squamosa, lives in symbiosis with zooxanthellae which reside extracellularly inside a tubular system. Zooxanthellae fix inorganic carbon (Ci) during insolation and donate photosynthate to the host. Carbonic anhydrases catalyze the interconversion of CO 2 and HCO3−, of which carbonic anhydrase 2 (CA2) is the most ubiquitous and involved in many biological processes. This study aimed to clone a CA2 homolog (CA2‐like) from the fleshy and colorful outer mantle as well as the thin and whitish inner mantle of T. squamosa, to determine its cellular and subcellular localization, and to examine the effects of light exposure on its gene and protein expression levels. The cDNA coding sequence of CA2‐like from T. squamosa comprised 789 bp, encoding 263 amino acids with an estimated molecular mass of 29.6 kDa. A phenogramic analysis of the deduced CA2‐like sequence denoted an animal origin. CA2‐like was not detectable in the shell‐facing epithelium of the inner mantle adjacent to the extrapallial fluid. Hence, CA2‐like is unlikely to participate directly in light‐enhanced calcification. By contrast, the outer mantle, which contains the highest density of tertiary tubules and zooxanthellae, displayed high level of CA2‐like expression, and CA2‐like was localized to the tubule epithelial cells. More importantly, exposure to light induced significant increases in the protein abundance of CA2‐like in the outer mantle. Hence, CA2‐like could probably take part in the increased supply of inorganic carbon (Ci) from the host clam to the symbiotic zooxanthellae when the latter conduct photosynthesis to fix Ci during light exposure.

Ocean acidification compromises a planktic calcifier with implications for global carbon cycling

Anthropogenically-forced changes in ocean chemistry at both the global and regional scale have the potential to negatively impact calcifying plankton, which play a key role in ecosystem functioning and marine carbon cycling. We cultured a globally important calcifying marine plankter (the foraminifer, Globigerina bulloides) under an ecologically relevant range of seawater pH (7.5 to 8.3 total scale). Multiple metrics of calcification and physiological performance varied with pH. At pH > 8.0, increased calcification occurred without a concomitant rise in respiration rates. However, as pH declined from 8.0 to 7.5, calcification and oxygen consumption both decreased, suggesting a reduced ability to precipitate shell material accompanied by metabolic depression. Repair of spines, important for both buoyancy and feeding, was also reduced at pH < 7.7. The dependence of calcification, respiration, and spine repair on seawater pH suggests that foraminifera will likely be challenged by future ocean conditions. Furthermore, the nature of these effects has the potential to actuate changes in vertical transport of organic and inorganic carbon, perturbing feedbacks to regional and global marine carbon cycling. The biological impacts of seawater pH have additional, important implications for the use of foraminifera as paleoceanographic indicators.

The possible evolution and future of CO2-concentrating mechanisms.

CO2-concentrating mechanisms (CCMs), based either on active transport of inorganic carbon (biophysical CCMs) or on biochemistry involving supplementary carbon fixation into C4 acids (C4 and CAM), play a major role in global primary productivity. However, the ubiquitous CO2-fixing enzyme in autotrophs, Rubisco, evolved at a time when atmospheric CO2 levels were very much higher than today and O2 was very low and, as CO2 and O2 approached (by no means monotonically), today's levels, at some time subsequently many organisms evolved a CCM that increased the supply of CO2 and decreased Rubisco oxygenase activity. Given that CO2 levels and other environmental factors have altered considerably between when autotrophs evolved and the present day, and are predicted to continue to change into the future, we here examine the drivers for, and possible timing of, evolution of CCMs. CCMs probably evolved when CO2 fell to 2-16 times the present atmospheric level, depending on Rubisco kinetics. We also assess the effects of other key environmental factors such as temperature and nutrient levels on CCM activity and examine the evidence for evolutionary changes in CCM activity and related cellular processes as well as limitations on continuity of CCMs through environmental variations.

The carbonic anhydrase CAH1 is an essential component of the carbon-concentrating mechanism in Nannochloropsis oceanica

Aquatic photosynthetic organisms cope with low environmental CO2 concentrations through the action of carbon-concentrating mechanisms (CCMs). Known eukaryotic CCMs consist of inorganic carbon transporters and carbonic anhydrases (and other supporting components) that culminate in elevated [CO2] inside a chloroplastic Rubisco-containing structure called a pyrenoid. We set out to determine the molecular mechanisms underlying the CCM in the emerging model photosynthetic stramenopile, Nannochloropsis oceanica, a unicellular picoplanktonic alga that lacks a pyrenoid. We characterized CARBONIC ANHYDRASE 1 (CAH1) as an essential component of the CCM in N. oceanica CCMP1779. We generated insertions in this gene by directed homologous recombination and found that the cah1 mutant has severe defects in growth and photosynthesis at ambient CO2 We identified CAH1 as an α-type carbonic anhydrase, providing a biochemical role in CCM function. CAH1 was found to localize to the lumen of the epiplastid endoplasmic reticulum, with its expression regulated by the external inorganic carbon concentration at both the transcript and protein levels. Taken together, these findings show that CAH1 is an indispensable component of what may be a simple but effective and dynamic CCM in N. oceanica.

Enhancing soybean photosynthetic CO2 assimilation using a cyanobacterial membrane protein, ictB

Soybean C3 photosynthesis can suffer a severe loss in efficiency due to photorespiration and the lack of a carbon concentrating mechanism (CCM) such as those present in other plant species or cyanobacteria. Transgenic soybean (Glycine max cv. Thorne) plants constitutively expressing cyanobacterial ictB (inorganic carbon transporter B) gene were generated using Agrobacterium-mediated transformation. Although more recent data suggest that ictB does not actively transport HCO3-/CO2, there is nevertheless mounting evidence that transformation with this gene can increase higher plant photosynthesis. The hypothesis that expression of the ictB gene would improve photosynthesis, biomass production and seed yield in soybean was tested, in two independent replicated greenhouse and field trials. Results showed significant increases in photosynthetic CO2 uptake (Anet) and dry mass in transgenic relative to wild type (WT) control plants in both the greenhouse and field trials. Transgenic plants also showed increased photosynthetic rates and biomass production during a drought mimic study. The findings presented herein demonstrate that ictB, as a single-gene, contributes to enhancement in various yield parameters in a major commodity crop and point to the significant role that biotechnological approaches to increasing photosynthetic efficiency can play in helping to meet increased global demands for food.

Photosynthetic responses of the marine diatom Thalassiosira pseudonana to CO2-induced seawater acidification

Ocean acidification due to atmospheric CO2 rise is expected to influence marine phytoplankton. Diatoms are responsible for about 40% of the total primary production in the ocean. In order to investigate the physiological response of marine diatom Thalassiosira pseudonana to ocean acidification, we grew the cells under ambient CO2 level (380 µatm) versus the elevated CO2 level (800 µatm) at a light level of 180 µmol m−2 s−1 for 30 generations. Our results showed that the elevated CO2 concentration caused a decrease of the effective photochemical efficiency of PSII $$\left( {{{F_{{\text{v}}}^{\prime } } \mathord{\left/ {\vphantom {{F_{{\text{v}}}^{\prime } } {F_{{\text{m}}}^{\prime } }}} \right. \kern-\nulldelimiterspace} {F_{{\text{m}}}^{\prime } }}} \right)$$ and increase of the dark respiration in T. pseudonana. The intracellular carbonic anhydrase activity was suppressed and the photosynthetic affinity for CO2 was lowered in the high CO2-grown cells, reflecting a downregulation of the CO2 concentrating mechanism (CCM). PSI activity was enhanced to support an increase in ATP synthesis by cyclic electron transfer as required for transport of inorganic carbon and regulation of intracellular pH. The energetic benefit from the downregulation of CCM to growth as reported in other diatom species was not observed here in T. pseudonana.

PH determines the energetic efficiency of the cyanobacterial CO2 concentrating mechanism

Many carbon-fixing bacteria rely on a CO2 concentrating mechanism (CCM) to elevate the CO2 concentration around the carboxylating enzyme ribulose bisphosphate carboxylase/oxygenase (RuBisCO). The CCM is postulated to simultaneously enhance the rate of carboxylation and minimize oxygenation, a competitive reaction with O2 also catalyzed by RuBisCO. To achieve this effect, the CCM combines two features: active transport of inorganic carbon into the cell and colocalization of carbonic anhydrase and RuBisCO inside proteinaceous microcompartments called carboxysomes. Understanding the significance of the various CCM components requires reconciling biochemical intuition with a quantitative description of the system. To this end, we have developed a mathematical model of the CCM to analyze its energetic costs and the inherent intertwining of physiology and pH. We find that intracellular pH greatly affects the cost of inorganic carbon accumulation. At low pH the inorganic carbon pool contains more of the highly cell-permeable H2CO3, necessitating a substantial expenditure of energy on transport to maintain internal inorganic carbon levels. An intracellular pH ≈8 reduces leakage, making the CCM significantly more energetically efficient. This pH prediction coincides well with our measurement of intracellular pH in a model cyanobacterium. We also demonstrate that CO2 retention in the carboxysome is necessary, whereas selective uptake of HCO3 (-) into the carboxysome would not appreciably enhance energetic efficiency. Altogether, integration of pH produces a model that is quantitatively consistent with cyanobacterial physiology, emphasizing that pH cannot be neglected when describing biological systems interacting with inorganic carbon pools.

Recent advances in CO2 uptake and fixation mechanism of cyanobacteria and microalgae

ABSTRACTAquatic photosynthetic microorganisms, cyanobacteria and microalgae, account for almost half of the world's photosynthesis. They absorb carbon di oxide (CO2) as the major substrate to support photosynthesis, the beginning of energy flow into living organisms and one of the primary processes comprising the global carbon cycle. Among all photosynthetic mechanisms, inorganic carbon transport into ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) is one of the major limiting steps in photosynthetic carbon fixation which involves active transport of HCO3−, CO2 and/or H+, or an energized biochemical mechanism. In fact, a unique system “carbon concentrating mechanism (CCM)” manages the inorganic carbon assimilation, accumulation of CO2 around RuBisCO, and utilization in algal cells. However, the information on mechanism of CO2 uptake and fixation inside the algal cells is limited. In order to make strategies for enhancement of CO2 fixation, understanding of CCM is crucial. Thus, this review provides an overview of advances in CCM research, the comparative state of the art and reports on the CO2 uptake model in cyanobacteria and microalgae. The review also discusses the challenges and future perspectives associated with algal CCM research.

Role of habitat and great oxidation event on the occurrence of three multisubunit inorganic carbon-uptake systems in cyanobacteria.

The oxygenase reaction catalyzed by RuBisCO became an issue only after the evolution of the oxygenic photosynthesis in cyanobacteria. Several strategies were developed by autotrophic organisms as an evolutionary response to increase oxygen levels to help RuBisCO maximize its net carboxylation rate. One of the crucial advancements in this context was the development of more efficient inorganic carbon transporters which could help in increasing the influx of inorganic carbon (Ci) at the site of CO₂ fixation.We conducted a survey to find out the genes coding for cyanobacterial Ci transporters in 40 cyanobacterial phyla with respect to transporters present in Gloeobacter violaceous PCC 7421, an early-diverging cyanobacterium. An attempt was also made to correlate the prevalence of the kind of transporter present in the species with its habitat. Basically, two types of cyanobacterial inorganic carbon transporters exist, i.e. bicarbonate transporters and CO₂-uptake systems. The transporters also show variation in context to their structure as some exist as single subunit proteins (BicA and SbtA), while others exist as multisubunit proteins (namely BCT1, NdhI₃ and NdhI₄). The phylogeny and dist ribution of the former have been extensively studied and the present analysis provides an insight into the latter ones. The in silico analysis of the genes under study revealed that their distribution was greatly influenced by the habitat and major environmental changes such as the great oxidation event (GOE) in the course of their evolution.