C-type lectins (CTLs), a superfamily of calcium-dependent carbohydrate binding proteins, which remain uncharacterized in bivalve mollusks such as blood clam Tegillarca granosa, plays a pivotal role in non-self-recognition and pathogen clearance within the innate immune system. In this study, we identified a CTL as a potential marker gene for immune cells in T. granosa using single-cell RNA-sequence (scRNA-seq). Structural predictions confirmed TgCTL as a functional protein, being characterized by a classic C-type lectin domain (CTLD) and a stable transmembrane structure. Furthermore, the Vibrio parahaemolyticus challenge experiment indicated that the TgCTL gene can significantly respond to pathogen invasion as a marker of immune response and can effectively eliminate pathogens. Results of RNA interference (RNAi) showed that TgCTL knockdown led to a significant decrease in hemocytes phagocytic activity (P < 0.05). Taken together, the results of this study revealed that TgCTL, a marker for immune response, could participate in immune defense against pathogens by enhancing phagocytosis of hemocytes, providing new insights into the antimicrobial immune response of T. granosa.