Transformation Of Small Molecules Research Articles

Expansion of Auxiliary Activity Family 5 sequence space via biochemical characterization of six new copper radical oxidases.

Bacterial and fungal copper radical oxidases (CROs) from Auxiliary Activity Family 5 (AA5) are implicated in morphogenesis and pathogenesis. The unique catalytic properties of CROs also make these enzymes attractive biocatalysts for the transformation of small molecules and biopolymers. Despite a recent increase in the number of characterized AA5 members, especially from subfamily 2 (AA5_2), the catalytic diversity of the family as a whole remains underexplored. In the present study, phylogenetic analysis guided the selection of six AA5_2 members from diverse fungi for recombinant expression in Komagataella pfaffii (syn. Pichia pastoris) and biochemical characterization in vitro. Five of the targets displayed predominant galactose 6-oxidase activity (EC 1.1.3.9), and one was a broad-specificity aryl alcohol oxidase (EC 1.1.3.7) with maximum activity on the platform chemical 5-hydroxymethyl furfural (EC 1.1.3.47). Sequence alignment comparing previously characterized AA5_2 members to those from this study indicated various amino acid substitutions at active site positions implicated in the modulation of specificity.IMPORTANCEEnzyme discovery and characterization underpin advances in microbial biology and the application of biocatalysts in industrial processes. On one hand, oxidative processes are central to fungal saprotrophy and pathogenesis. On the other hand, controlled oxidation of small molecules and (bio)polymers valorizes these compounds and introduces versatile functional groups for further modification. The biochemical characterization of six new copper radical oxidases further illuminates the catalytic diversity of these enzymes, which will inform future biological studies and biotechnological applications.

Approaches to Improving Selectivity During Photoelectrochemical Transformation of Small Molecules

Approaches to Improving Selectivity During Photoelectrochemical Transformation of Small Molecules

Third-order nonlinear optics and optical limiting of phenanthrenone derivatives

Organic nonlinear optical materials have attracted much attention due to their large nonlinear optical coefficients and ultrafast response speeds, as well as their potential applications in optical limiting (OL). Among them, nonlinear optical materials with phenanthrenone as the backbone are consistently understudied. We have successfully realized the transformation of organic small molecules in the nonlinear optical direction by replacing the carbonyl group on the structure of phenanthrenone with a malononitrile group. The nonlinear optical properties of CN-2 were investigated under different excitation conditions at 532 nm and the kinetic process of nonlinear optics was analyzed by transient absorption spectroscopy. In addition, we also investigated the OL properties of CN-2, and the OL experiments showed that CN-2 with a lower OL threshold has superior OL properties than C60.

Functional ladder-like heterojunctions of Mo2C layers inside carbon sheaths for efficient CO2 fixation

The development of two-dimensional heterogeneous catalysts with highly exposed active site areas for heterogeneous catalytic systems is highly promising for achieving the green transformation of small molecules. 2D transition metal carbides (TMCs) show great promise for catalysis and carbon capture but suffer from heavy aggregation and autooxidation. Mass transfer barrier is also a standard problem of lamellar TMCs caused by slight aggregation of layers. Here, we successfully developed a method to prepare “ladder-like” heterojunctions of Mo2C layers confined inside nitrogen-rich carbon sheaths (2D-Mo2C@NC) via an effective oxygen-diffusion etching strategy, acting as efficient catalysts for CO2 fixation. The enhanced electron enrichment of the as-integrated 2D-Mo2C subunits induced by the Schottky barrier could further keep the exposed Mo2C surface from possible autooxidation and aggregation confronted by conventional 2D TMCs. The experimental results and density functional theory (DFT) calculation further demonstrate that electron-rich Mo2C could boost the adsorption and activation of CO2 for universal carbonylation of various diamines, providing a turnover frequency value (TOF) of 10.2 h−1 to produce benzimidazolone, which is 5.2 times of that of the state-of-the-art catalyst in the literature under even critical conditions.

Formaldehyde-Mediated Hydride Liberation of Alkylamines for Intermolecular Reactions in Hexafluoroisopropanol.

The ability of alkylamines to spontaneously liberate hydride ions is typically restrained, except under specific intramolecular reaction settings. Herein, we demonstrate that this reactivity can be unlocked through simple treatment with formaldehyde in hexafluoroisopropanol (HFIP) solvent, thereby enabling various intermolecular hydride transfer reactions of alkylamines under mild conditions. Besides transformations of small molecules, these reactions enable unique late-stage modification of complex peptides. Mechanistic investigations uncover that the key to these intermolecular hydride transfer processes lies in the accommodating conformation of solvent-mediated macrocyclic transition states, where the aggregates of HFIP molecules act as dexterous proton shuttles. Importantly, negative hyperconjugation between the lone electron pair of nitrogen and the antibonding orbital of amine's α C-H bond plays a critical role in the C-H activation, promoting its hydride liberation.

NIR-II organic small molecule probe for labeling lymph nodes and guiding tumor imaging

Organic small molecule fluorescent groups have injected new material support into the field of medical imaging due to their unique luminescence mechanism and easy tuning of structure. The great potential of NIR-II window imaging forces us to continuously optimize the structure of organic fluorophores to design better fluorescent molecules for fluorescence imaging-guided surgery. An ideal organic small molecule fluorescent group: it can penetrate into the inside of the organism, clearly present the internal structure and the edge contour of different tissues, so as to perfectly achieve internal imaging and accurately guide external surgery. In vivo, fluorescent groups do not damage normal tissues and organs. However, problems such as low quantum yield and poor biocompatibility greatly limit the clinical transformation of NIR-II fluorescent small molecules. To avoid the shortcomings of NIR-II fluorescent probes as much as possible and better realize image-guided surgery, in this experiment, the biplane donor unit was incorporated into the twisted D-π-A-π-D structure to expand the conjugated structure of the fluorescent group, which not only realized NIR-II emission, but also had high quantum yield and biosafety.

Application of Photo-inactive Ru(edta) Complexes in Photocatalytic Small Molecules Transformation over Semiconductor Surface - A Perspective

Abstract: Photocatalytic transformation of small substrate molecules to useful products through an environmentally benign and economically viable pathway is a challenging area of research of continual importance. This review focuses on our perception of the application of ruthenium(III) complexes comprising ‘edta’ ligand (edta4- = ethylenediaminetetraacetate) as a ‘redox mediator’ or ‘relay’ in photocatalytic electron transfer reaction pertaining to the conversion of small substrate molecules viz. hydrazine to ammonia, bicarbonate to formate, dioxygen to hydrogen peroxide. In this article, the prospect of [RuIII(edta)(H2O)]- and [RuIII(edta)(pz)]- to act as ‘redox mediator’ or ‘molecular catalysts’ in photocatalytic transformations of aforesaid small molecules are assessed systematically.

Ultrasonic Transformation of Antibiotic Molecules into a Selective Chemotherapeutic Nanodrug.

Ultrasound-based engineering of carrier-free nanodrugs by supramolecular self-assembly has recently emerged as an innovative and environmentally friendly synthetic approach. By applying high-frequency sound waves (490 kHz) in aqueous solutions, the transformation of small chemotherapeutic and antibiotic drug molecules into carrier-free nanodrugs with anticancer and antimicrobial activities was recently achieved. The transformation of the antibiotic drug molecules, i.e., doxycycline, into stable nanodrugs (~130 nm) with selective anticancer activity was achieved without requiring organic solvents, chemical agents, or surfactants. The obtained nanodrug exhibited reactive oxygen species (ROS)-mediated cytotoxicity on human breast cancer (MDA-MB 231 cells) but a negligible antiproliferative effect on healthy fibroblast cells. Imaging by super-resolution microscopy (STORM) provided insights into the intracellular trafficking and endosomal escape of the nanodrugs. Overall, these findings suggest that small antibiotic drugs can be transformed into chemotherapeutic nanodrugs with high selectivity against cancer cells.

Hydrothermal carbonization of waste furniture for clean blast furnace fuel production: Physicochemical, gasification characteristics and conversion mechanism investigation

This study aimed to investigate the physical and chemical characteristics of hydrochar derived from waste furniture through hydrothermal carbonization (HTC) and evaluate its suitability as a fuel for blast furnace injection, the formation mechanism of biomass conversion to hydrochar was also systematically investigated. The optimal HTC conditions were determined as 260 °C, liquid–solid mass ratio of 2:1. The resulting hydrochar exhibited a high calorific value of 27.78 MJ/kg, a specific surface area (St) of 3.01 m2/g, and K and Na concentrations of 203 mg/kg and 416 mg/kg, respectively. The apparent activation energy (E) for gasification was measured as 154.54 kJ/mol, indicating its potential as a clean injection fuel for blast furnaces. During HTC, cellulose, hemicellulose, and lignin underwent hydrolysis, decarboxylation, polymerization, and aromatization processes, resulting in the transformation of water-soluble small molecules into polymerized hydrochar and water-insoluble large molecules into polyaromatic hydrochar. This study provides insights into the possibility of replacing fossil fuels in the blast furnace iron-making process.

Chemoproteomic Approaches for Unraveling Prokaryotic Biology.

Bacteria are ubiquitous lifeforms with important roles in the environment, biotechnology, and human health. Many of the functions that bacteria perform are mediated by proteins and enzymes, which catalyze metabolic transformations of small molecules and modifications of proteins. To better understand these biological processes, chemical proteomic approaches, including activity-based protein profiling, have been developed to interrogate protein function and enzymatic activity in physiologically relevant contexts. Here, chemoproteomic strategies and technological advances for studying bacterial physiology, pathogenesis, and metabolism are discussed. The development of chemoproteomic approaches for characterizing protein function and enzymatic activity within bacteria remains an active area of research, and continued innovations are expected to provide breakthroughs in understanding bacterial biology.

Gas-phase reactions driven by polarized metal-metal bonding in atomic clusters.

Multimetallic catalysts exhibit great potential in the activation and catalytic transformation of small molecules. The polarized metal-metal bonds have been gradually recognized to account for the reactivity of multimetallic catalysts due to the synergistic effect of different metal centers. Gas-phase reactions on atomic clusters that compositionally resemble the active sites on related condensed-phase catalysts provide a widely accepted strategy to clarify the nature of polarized metal-metal bonds and the mechanistic details of elementary steps involved in the catalysis driven by this unique chemical bonding. This perspective review concerns the progress in the fundamental understanding of industrially and environmentally important reactions that are closely related to the polarized metal-metal bonds in clusters at a strictly molecular level. The following topics have been summarized and discussed: (1) catalytic CO oxidation with O2, H2O, and NO as oxidants (2) and the activation of other inert molecules (e.g., CH4, CO2, and N2) mediated with clusters featuring polarized metal-metal bonding. It turns out that the findings in the gas phase parallel the catalytic behaviors of condensed-phase catalysts and the knowledge can prove to be essential in inspiring future design of promising catalysts.

Structural Reconstruction of Catalysts in Electroreduction Reaction: Identifying, Understanding, and Manipulating.

Electroreduction transformation of small molecules (CO2 , N2 , and H2 O) into chemical feedstocks offers a promising approach to eliminate carbon emissions and harness renewable energy. Most cathodic catalysts often undergo structural transformation under operating electroreduction conditions. These structural reconstructions are reflected in changes in their catalytic activity. In-depth understanding of the change of active sites and influence parameters of reconstruction behaviors is an essential precondition for the design of highly efficient catalysts. Despite the previous achievements, comprehensive insight toward the structural evolution mechanism in cathodic catalysts, compared to anode ones, under reaction conditions is still lacking. Herein, an overview of structural reconstruction for cathodic catalysts in terms of fundamental mechanisms, reconstruction process, advanced characterizations, and influencing parameters is provided. On this basis, the typical strategies for manipulating the structural reconfiguration of catalysts are also explicitly discussed from the catalyst structure and working environment. By delivering the mechanism, strategies, insights, and techniques, this review will provide a comprehensive understanding of the structural reconstruction of cathodic catalysts in electroreduction reactions and future guidelines for their rational development.

Gastight rotating cylinder electrode: Toward decoupling mass transport and intrinsic kinetics in electrocatalysis

AbstractDecoupling and understanding the various mass, charge, and heat transport phenomena involved in the electrocatalytic transformation of small molecules (i.e., CO2, CO, H2, N2, NH3, O2, and CH4) is challenging but it can be readily achieved using dimensionless quantities (i.e., Reynolds, Sherwood, Schmidt, Damköhler, Nusselt, Prandtl, and Peclet Numbers) to simplify the characterization of systems with multiple interacting physical phenomena. Herein we report the development of a gastight rotating cylinder electrode cell with well‐defined mass transport characteristics that can be applied to experimentally decouple mass transfer effects from intrinsic kinetics in electrocatalytic systems. The gastight rotating cylinder electrode cell enables the dimensionless analysis of electrocatalytic systems and should enable the rigorous research and development of electrocatalytic technologies.

Influence of zinc oxide/expanded vermiculite composite on the rheological and anti-aging properties of bitumen

The bitumen modifier, zinc oxide (ZnO)/expanded vermiculite (EVMT) composite (ZnO/EVMT), was introduced into the bitumen with a dosage of 4%, 5%, and 6%. The surface morphology of EVMT and ZnO/EVMT was characterized by a field emission scanning microscope (FESEM). Further, the Superpave continuous grade of bitumen containing different amounts of ZnO/EVMT was determined by the dynamic shear rheometer (DSR) test and bending beam rheometer (BBR) test. The bitumen samples were aged by thin film oven test (TFOT), pressure aging vessel (PAV) aging test and ultraviolet (UV) aging test, and the influence of different amounts of ZnO/EVMT on both physical and rheological properties of the bitumen before and after aging were investigated. Moreover, the influence of ZnO/EVMT on the molecular distribution during aging was investigated by analyzing the change in the proportion of large molecular size (LMS) obtained from gel permeation chromatography (GPC). The FESEM result shows the ZnO particles are uniformly supported on the EVMT surface. Moreover, ZnO/EVMT slightly influences the high-temperature performance and improves the low-temperature cracking resistance of bitumen. In addition, no matter what aging method is adopted, ZnO/EVMT effectively increases the retained penetration and phase angle aging index, and decreases the viscosity aging index and complex modulus aging index of the bitumen, demonstrating the effectiveness of ZnO/EVMT in both resisting the thermo- and photo-oxidative aging of bitumen. Meanwhile, 6% and 4% ZnO/EVMT exhibit the best inhibitory effect on thermo- and photo-oxidative aging of bitumen, respectively. According to the GPC results, the composite inhibits the transformation of small molecules to large molecules during aging, resulting in a lower LMS increment and better anti-aging properties of the modified bitumen.

Construction of a low-valent thiolate-bridged dicobalt platform and its reactivity toward hydrogen activation and evolution

Low-valence transition metallic complexes have drawn longstanding attention due to their high reactivity toward catalytic transformation of various small molecules. Among these known complexes, the low-valence metal centres are commonly stabilized by neutral bulky ligands with strong electron-donating capacity. However, low-valence bimetallic complexes supported by anionic sulfur and cyclopentadienyl ligands are still difficult to obtain in high isolated yield. Herein, we report the synthesis and characterization of two scarce thiolate-bridged CoICoII and CoICoI complexes bearing sterically demanding ligands through two stepwise one-electron reduction processes. Interestingly, the CoICoII complex can facilely promote the homolytic cleavage of dihydrogen across the short Co−Co metallic bond to give a CoIICoIII dihydride bridged complex, which is capable of serving as a competent hydrogen atom transfer agent. Moreover, the anionic CoICoI complex can trigger a stepwise hydrogen generation cycle involving several isolated and structurally well-characterized intermediates.

Electrochemical Assembly for Synthesis of Middle-Sized Organic Molecules.

Electrochemical methods offer a powerful, reliable, and environmentally benign approach for the synthesis of small organic molecules, and such methods are useful not only for the transformation of small molecules, but also for the preparation of oligomers and polymers. Electrochemical assembly is a concept that allows structurally well-defined middle-sized organic molecules to be synthesized by applying electrochemical methods. The preparation of dendrimers, dendronized polymers, and oligosaccharides are introduced as examples of such an approach. Automated electrochemical assembly of oligosaccharides is also demonstrated using the electrochemical synthesizer developed by our group.

Insight into the Electronic Structure of Biomimetic Dinitrosyliron Complexes (DNICs): Toward the Syntheses of Amido-Bridging Dinuclear DNICs.

The ubiquitous function of nitric oxide (NO) guided the biological discovery of the natural dinitrosyliron unit (DNIU) [Fe(NO)2] as an intermediate/end product after Fe nitrosylation of nonheme cofactors. Because of the natural utilization of this cofactor for the biological storage and delivery of NO, a bioinorganic study of synthetic dinitrosyliron complexes (DNICs) has been extensively explored in the last 2 decades. The bioinorganic study of DNICs involved the development of synthetic methodology, spectroscopic discrimination, biological application of NO-delivery reactivity, and translational application to the (catalytic) transformation of small molecules. In this Forum Article, we aim to provide a systematic review of spectroscopic and computational insights into the bonding nature within the DNIU [Fe(NO)2] and the electronic structure of different types of DNICs, which highlights the synchronized advance in synthetic methodology and spectroscopic tools. With regard to the noninnocent nature of a NO ligand, spectroscopic and computational tools were utilized to provide qualitative/quantitative assignment of oxidation states of Fe and NO in DNICs with different redox levels and ligation modes as well as to probe the Fe-NO bonding interaction modulated by supporting ligands. Besides the strong antiferromagnetic coupling between high-spin Fe and paramagnetic NO ligands within the covalent DNIU [Fe(NO)2], in polynuclear DNICs, the effects of the Fe···Fe distance, nature of the bridging ligands, and type of bridging modes on the regulation of the magnetic coupling among paramagnetic DNIU [Fe(NO)2] are further reviewed. In the last part of this Forum Article, the sequential reaction of {Fe(NO)2}10 DNIC [(NO)2Fe(AMP)] (1-red) with NO(g), HBF4, and KC8 establishes a synthetic cycle, {Fe(NO)2}9-{Fe(NO)2}9 DNIC [(NO)2Fe(μ-dAMP)2Fe(NO)2] (1) → {Fe(NO)2}9 DNIC [(NO2)Fe(AMP)][BF4] (1-H) → {Fe(NO)2}10 DNIC 1-red → DNIC 1, for the transformation of NO into HNO/N2O. Of importance, the NO-induced transformation of {Fe(NO)2}10 DNIC 1-red and [(NO)2Fe(DTA)] (2-red; DTA = diethylenetriamine) unravels a synthetic strategy for preparation of the {Fe(NO)2}9-{Fe(NO)2}9 DNICs [(NO)2Fe(μ-NHR)2Fe(NO)2] containing amido-bridging ligands, which hold the potential to feature distinctive physical properties, chemical reactivities, and biological applications.

Electrochemistry of Ru(edta) complexes relevant to small molecule transformations: Catalytic implications and challenges

Electrochemistry of Ru(edta) complexes (edta4− = ethylenediaminetetraacetate) progressed over a period of several decades, with significant increase in understanding of the electro-catalytic processes involving the substrate coordinated to the metal center. While electrochemistry studies of many Ru(edta) complexes were published in several papers, no attempt has been made to provide a comprehensive and systematic overview of its electrochemical properties, evaluating its application to catalytic electrochemical transformation of small molecules. In this article, results of the electrochemical studies of both mononuclear and binuclear complexes of Ru(edta) are reviewed with regard to electron-transfer reaction mechanism and activity. Their potential to act as redox mediators or catalysts in electrochemical transformations of small molecules and enzymatic reactions, are highlighted. This review aims to contribute to the mechanistic understanding of Ru(edta) complexes in catalysis of such electrochemical transformations.

Oxidation-Induced "One-Pot" Click Chemistry.

Click chemistry has been established rapidly as one of the most valuable methods for the chemical transformation of complex molecules. Due to the rapid rates, clean conversions to the products, and compatibility of the reagents and reaction conditions even in complex settings, it has found applications in many molecule-oriented disciplines. From the vast landscape of click reactions, approaches have emerged in the past decade centered around oxidative processes to generate in situ highly reactive synthons from dormant functionalities. These approaches have led to some of the fastest click reactions know to date. Here, we review the various methods that can be used for such oxidation-induced “one-pot” click chemistry for the transformation of small molecules, materials, and biomolecules. A comprehensive overview is provided of oxidation conditions that induce a click reaction, and oxidation conditions are orthogonal to other click reactions so that sequential “click-oxidation-click” derivatization of molecules can be performed in one pot. Our review of the relevant literature shows that this strategy is emerging as a powerful approach for the preparation of high-performance materials and the generation of complex biomolecules. As such, we expect that oxidation-induced “one-pot” click chemistry will widen in scope substantially in the forthcoming years.

Isomerization and Selective Hydrogenation of Propyne: Screening of Metal-Organic Frameworks Modified by Atomic Layer Deposition.

Various metal oxide clusters upward of 8 atoms (Cu, Cd, Co, Fe, Ga, Mn, Mo, Ni, Sn, W, Zn, In, and Al) were incorporated into the pores of the metal-organic framework (MOF) NU-1000 via atomic layer deposition (ALD) and tested via high-throughput screening for catalytic isomerization and selective hydrogenation of propyne. Cu and Co were found to be the most active for propyne hydrogenation to propylene, and synergistic bimetallic combinations of Co and Zn, along with standalone Zn and Cd, were established as the most active for conversion to the isomerized product, propadiene. The combination of Co and Zn in NU-1000 diminished the propensity for full hydrogenation to propane as well as coking compared to its individual components. This study highlights the potential for high-throughput screening to survey monometallic and bimetallic cluster combinations that best affect the efficient transformation of small molecules, while discerning mechanistic differences in isomerization and hydrogenation by different metals.