Barrier islands are threatened by climate change as sea-level rise and higher frequency storm surge lead to more flooding and saltwater intrusion. Vegetation plays a vital role in preventing erosion of barrier islands due to aeolian and hydrological forces. However, vegetation on barrier islands is threatened by rising water tables causing hypoxic conditions and storm-surge overwash introducing saline water to the root zone. To better protect barrier island ecosystems, it is critical to identify the relative influence of different hydrological drivers on water table elevation and salinity, and understand how this influence varies spatially and temporally. In this study, three barrier island sites were instrumented with groundwater wells monitoring water level and specific conductance. Using these data, a set of transfer function noise models were calibrated and used to determine the relative influence of hydrologic drivers including precipitation, evapotranspiration, bay and ocean water levels, and wave height on groundwater levels and specific conductance. We found that drivers of water-level change and specific conductance vary strongly among sites, depending primarily on the surface water connectivity and the geology of the island. Sites with close connection to inlets showed more salinization and responded to a larger number of drivers, while sites that were poorly connected to the ocean responded to fewer drivers.