Traits In Swine Research Articles

Quantitative trait loci for red blood cell traits in swine

Haematological traits are essential diagnostic parameters in veterinary practice but knowledge on the genetic architecture controlling variability of erythroid traits is sparse, especially in swine. To identify QTL for erythroid traits in the pig, haematocrit (HCT), haemoglobin (HB), erythrocyte counts (RBC) and mean corpuscular haemoglobin content (MCHC) were measured in 139 F(2) pigs from a Meishan/Pietrain family, before and after challenge with the protozoan pathogen Sarcocystis miescheriana. The pigs passed through three stages representing acute disease, reconvalescence and chronic disease. Forty-three single QTL controlling erythroid traits were identified on 16 chromosomes. Twelve of the QTL were significant at the genome-wide level while 31 were significant at a chromosome-wide level. Because erythroid traits varied with health and disease status, QTL influencing the erythroid phenotypes showed specific health/disease patterns. Regions on SSC5, 7, 8, 12 and 13 contained QTL for baseline erythroid traits, while the other QTL regions affected distinct stages of the disease model. Single QTL explained 9-17% of the phenotypic variance in the F(2) animals. Related traits were partly under common genetic influence. Our analysis confirms that erythroid trait variation differs between Meishan and Pietrain breeds and that this variation is associated with multiple chromosomal regions.

경남흑돈(버크셔)에서 성장곡선을 이용한 성장형질의 추정

돼지의 중요한 경제형질인 성장형질은 검정기간동안의 증체량이나 특정한 체중에 도달하는 일수를 측정한다. 그러나 성장형질은 개체의 능력외의 다른 요인에 의해서도 영향을 받는다. 유전능력 평가를 위해서는 합리적인 측정치를 이용하여 불필요한 오류를 줄여야 한다. 이러한 요인에 의한 성장률의 차이를 줄이기 위하여 경남첨단양돈연구소의 경남흑돈(Berkshire) 1,576두의 자료를 가지고 성장곡선을 추정하여 성장곡선에 의해 일당증체량과 90kg 도달일령을 각각 추정하였다. 기존의 방법들과 정확도를 직접적으로 비교할 수 없으나 추정하는 방법론에 있어서 더 정교하여졌다. 이론적 우수성은 일당 증체량에서는 성장곡선상의 같은 연령을 비교하고, 90kg 도달일령에서는 종료체중 측정일에서 90kg 도달일까지의 일수를 개체의 성장곡선상의 일 증체량으로 계산하는 데에 있다. 또한 컴퓨터를 활용한다면 품종이나 성과 같은 요인들에 대해서도 이 추정방법을 쉽게 각각 적용할 수 있다. The growth traits in swine are economically important, which are measured by gain in weight during test period or by age of days to certain weight. However, the difference in growth rate due to individual performance and also other factors occurs. The more reasonable estimation of the measurements of these traits provides the less error in genetic evaluation of pigs. The data from 1,576 heads being weighed periodically of Gyungnam-heugdon(Berkshire) were analyzed to estimate the growth curve which is used to decide average daily gain and days to 90kg. It may not be possible to directly compare accuracy between the conventional methods and the alternative methods. However, the alternative methods by growth curve would be superior to the conventional methods not only in theoretical background, but also in acceptability for diverse factors such as breed, sex and age. The theoretical superiority of the alternative methods comes from estimation at same age in daily gain and calculation of additional days from measuring date to days to 90kg by growth curve of individual. Also this can be easily adopted in a computer system according to breed and sex.

Sequence variation and evaluation of inhibinα‐subunit and steroidogenic acute regulatory protein for reproductive traits in swine

Sequence variation and evaluation of <i>inhibin</i><i>α</i>‐<i>subunit</i> and <i>steroidogenic acute regulatory protein</i> for reproductive traits in swine

Characterization of the aldo-keto reductase 1C gene cluster on pig chromosome 10: possible associations with reproductive traits

BackgroundThe rate of pubertal development and weaning to estrus interval are correlated and affect reproductive efficiency of swine. Quantitative trait loci (QTL) for age of puberty, nipple number and ovulation rate have been identified in Meishan crosses on pig chromosome 10q (SSC10) near the telomere, which is homologous to human chromosome 10p15 and contains an aldo-keto reductase (AKR) gene cluster with at least six family members. AKRs are tissue-specific hydroxysteroid dehydrogenases that interconvert weak steroid hormones to their more potent counterparts and regulate processes involved in development, homeostasis and reproduction. Because of their location in the swine genome and their implication in reproductive physiology, this gene cluster was characterized and evaluated for effects on reproductive traits in swine.ResultsScreening the porcine CHORI-242 BAC library with a full-length AKR1C4 cDNA identified 7 positive clones and sample sequencing of 5 BAC clones revealed 5 distinct AKR1C genes (AKR1CL2 and AKR1C1 through 4), which mapped to 126–128 cM on SSC10. Using the IMpRH7000rad and IMNpRH212000rad radiation hybrid panels, these 5 genes mapped between microsatellite markers SWR67 and SW2067. Comparison of sequence data with the porcine BAC fingerprint map show that the cluster of genes resides in a 300 kb region. Twelve SNPs were genotyped in gilts observed for age at first estrus and ovulation rate from the F8 and F10 generations of one-quarter Meishan descendants of the USMARC resource population. Age at puberty, nipple number and ovulation rate data were analyzed for association with genotypes by MTDFREML using an animal model. One SNP, a phenylalanine to isoleucine substitution in AKR1C2, was associated with age of puberty (p = 0.07) and possibly ovulation rate (p = 0.102). Two SNP in AKR1C4 were significantly associated with nipple number (p ≤ 0.03) and another possibly associated with age at puberty (p = 0.09).ConclusionAKR1C genotypes were associated with nipple number as well as possible effects on age at puberty and ovulation rate. The estimated effects of AKR1C genotypes on these traits suggest that the SNPs are in incomplete linkage disequilibrium with the causal mutations that affect reproductive traits in swine. Further investigations are necessary to identify these mutations and understand how these AKR1C genes affect these important reproductive traits.The nucleotide sequence data reported have been submitted to GenBank and assigned accession numbers [GenBank:DQ474064–DQ474068, GenBank:DQ494488–DQ494490 and GenBank:DQ487182–DQ487184].

Identification of informative performance traits in swine using principal component analysis

Using principal component analysis, records of 435 animals from an F2 swine population were used to identity independent and informative variables of economically important performance. The following performance traits were recorded: litter size at birth (BL), litter size at weaning (WL), teat number (TN), birth weight (BW), weight at 21 (W21), 42 (W42), 63 (W63) and 77 (W77) days of age, average daily gain (ADG), feed intake (FI) and feed:gain ratio (FGR) from 77 to 105 days of age. Six principal components expressed variation lower than 0.7 (eigen values lower than 0.7) suggesting that six variables could be discarded with little information loss. The discarded variables present significant simple linear correlation with the retained variables. Retaining variables BL, TN, W77, FI and FGR and eliminating all the rest would retain most of the relevant information in the original data set.

Genetics of length of productive life and lifetime prolificacy in the Finnish Landrace and Large White pig populations1

The objective of this study was to estimate direct and indirect selection potential for length of productive life and lifetime prolificacy in Finnish Large White and Landrace swine populations. To study the direct selection potential, the heritabilities of these traits were estimated. The genetic correlations of length of productive life and lifetime prolificacy with prolificacy traits and overall leg conformation were estimated to evaluate whether selection for these traits could indirectly improve measures of sow longevity. In addition, correlations between length of productive life, lifetime prolificacy, ADG, and backfat thickness were estimated. Records were used from Finnish purebred Landrace (n = 26,744) and Large White (n = 24,007) sows born on operations that perform on-farm production tests on all females. Heritabilities were estimated using both a survival analysis procedure and a linear model. Due to computational limitations, correlations were estimated with the linear model only. Estimated length of productive life heritabilities obtained from linear model analyses were less (0.05 to 0.10) than those obtained from survival analyses (0.16 to 0.19). This may be indicative of the superiority of survival analysis compared with linear model analysis methods when evaluating longevity or similar types of data. All the prolificacy traits were genetically correlated with length of productive life and lifetime prolificacy, and the correlations were greater than 0.13. These results indicate that selection for increased number of piglets weaned in the first litter and for short first farrowing interval is beneficial for sow longevity and also for sow's lifetime prolificacy. The genetic correlations between length of productive life and leg conformation score also were favorable (0.32 in Landrace and 0.17 in Large White). The heritability estimates indicate that survival analysis is likely the most appropriate method of evaluating longevity traits in swine. Because of computational problems, simultaneous analysis of linear traits and longevity is not currently possible. More research is needed to develop methods for multiple linear and survival trait analyses.

Investigation of a peroxisome proliferator‐activated receptor gamma haplotype effect on meat quality and carcass traits in pigs

Peroxisome proliferator-activated receptor gamma (PPARG) is a key transcription factor that controls adipocyte differentiation and fat deposition in mammals. The primary goal of this study was to investigate PPARG as a candidate gene for meat quality and carcass traits in swine. Part of the PPARG promoter, along with the most 5'-proximal exon of the gene, was amplified by PCR and subsequently screened for polymorphisms by sequencing. A Met59Val substitution was detected in the porcine PPARG gene along with four polymorphisms in the promoter region of the adipose-specific PPARG2. Three of these polymorphisms were chosen for genotyping and tested for association with meat quality, carcass and growth traits, according to the candidate gene approach. More than 1500 animals from different lines and populations were used in the study with records for meat quality and carcass traits. No convincing associations were found between the traits investigated and the PPARG genotypes. It does not appear that variation at the PPARG locus is affecting meat quality, carcass or growth traits in the pig populations studied.

Examination of the relationship between the estrogen receptor gene and reproductive traits in swine.

The relationship between estrogen receptor (ESR) genotype and reproductive traits in a population of Yorkshire, Large White, and crossbred animals was studied. Reproductive tract and litter data were analyzed for associations with ESR genotype, parity, and breed. Forty-six Yorkshire, 31 Large White, and 70 crossbred females from the above population were mated to Hampshire boars and slaughtered at 75 d of gestation. Data collected included ovulation rate, uterine horn length, number of fetuses, fetal weight, uterine weight, number of mummies, fetal sex, fetal placement, fetal survival, and fetal space. Data were analyzed using a model that included the fixed effects of ESR genotype, breed, parity, and all significant two-way interactions. Litter data representing 212 litter records were analyzed in a model that included the fixed effects of ESR genotype of dam, parity, farrowing month, dam breed, sire breed, and all significant two-way interactions. The ESR genotype was significantly associated with the total litter weight of piglets born and total litter weight of piglets born alive. Dams with the AA genotype had significantly (P = 0.04) heavier litters at birth (14.44 +/- 0.36 kg) than dams with the BB genotype (13.43 +/- 0.47 kg). Ovulation rate was significantly (P < 0.05) different between animals of parity 1 (17.22 +/- 0.41) and parity > or = 3 (19.92 +/- 0.85). Significant breed effects were observed for fetal weight, with purebred Large White animals having a greater fetal weight per horn (3,909 +/- 114 g) than purebred Yorkshire animals (3,553 +/- 92 g). Notable, but nonsignificant, trends with respect to ESR genotype were also observed for number of piglets alive at weaning and total litter weight at weaning. The ESR gene is positively associated with several previously uninvestigated reproductive traits.

Identification of porcine Lhx3 and SF1 as candidate genes for QTL affecting growth and reproduction traits in swine.

The distal portion of the long arm of porcine chromosome 1 has been shown to harbour several quantitative trait loci affecting growth and reproductive traits in swine. In order to identify potential candidate genes that might underlie these effects, a comparative mapping analysis was undertaken to define the extent of orthologous segments of human chromosome 9. A microsatellite associated with heat shock protein (HSP) A5 was used to define the proximal boundary of the quantitative trait loci (QTL) region, which suggests the human orthologue of the gene(s) responsible for the observed effects lies between HSPA5 and the q arm telomere of human chromosome 9. Examination of this region revealed two candidate genes with known roles in production of hormones essential to growth and reproductive function. The steroidogenic factor 1 and Lhx3 LIM homeodomain transcription factor genes were mapped to 123 and 155 cM, respectively, of the Sus scrofa chromosome 1 (SSC1) linkage group, placing both genes within the confidence interval for the observed QTL. To further evaluate Lhx3, we examined the expression profile during porcine embryonic development. Low levels were detected at early embryonic stages, when development of the nervous system is proceeding. A transient increase in expression level is observed during the time of pituitary organogenesis and again at the time of differentiation of anterior pituitary cells, with relatively high levels of expression persisting in the adult pituitary gland. This ontology is consistent with Lhx3 being a candidate gene for the QTL.

Detection of quantitative trait loci for meat quality in a commercial slaughter pig cross.

The primary goal of this study was to localize quantitative trait loci (QTL) affecting meat quality traits in swine. In total, 42 traits were scored on 305 F2 individuals from a commercial slaughter pig cross in Norway. F1 and F2 individuals were genotyped for 29 markers on Chromosomes (Chrs) 4, 6, and 7, since previous studies had revealed QTL affecting meat quality traits on these chromosomes. The most evident result was detection of a QTL affecting amount of intramuscular fat on Chr 6. The QTL might also influence tenderness, whereas no effect was observed for back-fat thickness. Additionally, suggestive evidence for QTL affecting other meat quality traits was found on Chr 4 and Chr 7.

The combined genotypes effect of ESR and FSHβ genes on litter size traits in five different pig breeds

Estrogen receptor (ESR) and Follicular-stimulating hormone beta subunit (FSHβ) genes were chosen as candidates to determine whether they control litter size and some other reproductive traits in swine. 269 sows from five different pig breeds were genotyped by an established PCR-RFLPs protocol at both ESR and FSHβ loci. The effects of both ESR and FSHβ on pig reproductive traits, including total number born (TNB) and number born alive (NBA), are analyzed by SAS software (version 6.12). These computation results demonstrated that both ESR locus and FSHβ locus are the major genes influencing litter size in pigs. The sows of BBBB combined genotype of ESR and FSHβ loci generally produce 1.85–3.01 TNB and 2.0–3.0 NBA more than those of ABAA combined genotype. The notable effect of ESR locus and FSHβ locus on litter size of pigs have made it possible to inprove the pig reproduction by Marker-assisted selection (MAS). Moreover, introgression of the beneficial alleles into commercial pig breeding lines, in which the alleles were not present, will improve greatly the economically important reproductive traits and efficiency of pig production.

Responses in ovulation rate, embryonal survival, and litter traits in swine to 14 generations of selection to increase litter size.

Eleven generations of selection for increased index of ovulation rate and embryonal survival rate, followed by three generations of selection for litter size, were practiced. Laparotomy was used to count corpora lutea and fetuses at 50 d of gestation. High-indexing gilts, approximately 30%, were farrowed. Sons of dams in the upper 10% of the distribution were selected. Selection from Generations 12 to 14 was for increased number of fully formed pigs; replacements were from the largest 25% of the litters. A randomly selected control line was maintained. Responses at Generation 11 were approximately 7.4 ova and 3.8 fetuses at 50 d of gestation (P < .01) and 2.3 fully formed pigs (P < .01) and 1.1 live pigs at birth (P < .05). Responses at Generation 14 were three fully formed pigs (P < .01) and 1.4 live pigs (P < .05) per litter. Number of pigs weaned declined (P < .05) in the index line. Total litter weight weaned did not change significantly. Ovulation rate and number of fetuses had positive genetic correlations with number of stillborn pigs per litter. Significantly greater rate of inbreeding and increased litter size at 50 d of gestation in the select line may have contributed to greater fetal losses in late gestation, greater number of stillborn pigs, and lighter pigs at birth, leading to lower preweaning viability. Heritabilities of traits were between 8 and 25%. Genetic improvement programs should emphasize live-born pigs and perhaps weight of live-born pigs because of undesirable genetic relationships of ovulation rate and number of fetuses with numbers of stillborn and mummified pigs and because birth weight decreased as litter size increased.

Relationship of growth hormone and insulin-like growth factor-1 genotypes with growth and carcass traits in swine.

The contribution of chromosomal regions linked to growth hormone (GH) and insulin-like growth factor-1 (IGF-1) loci to variation in preweaning average daily gain, postweaning average daily gain (ADG), 10th rib backfat, loin-eye area and muscle pH were evaluated. Offspring of four purebred sires (A-D; n = 150, 195, 148 and 136, respectively) and two cross-bred sires (E and F; n = 157 and 145, respectively) were genotyped initially with GH and IGF-1 markers. When results of single marker analysis suggested possible linkage with a quantitative trait locus (QTL), additional flanking markers were typed for the family and interval mapping was performed. Growth hormone genotype was not associated with the traits evaluated in the study. Evidence suggestive of linkage was found for IGF-1 genotype and ADG in one sire family (lod = 2.3) where differences were 0.032 +/- 0.01 kg/day for alternative sire alleles. Evidence for a putative ADG QTL was greatest in the interval between IGF-1 and Sw1071. A similar genomic region has been associated with growth variation in mice; however, QTL mapping precision in the current study is insufficient to establish similarity.

Ten generations of selection for predicted weight of testes in swine: direct response and correlated response in body weight, backfat, age at puberty, and ovulation rate.

Selection for predicted weight of testes at 150 d of age (PWT) was practiced for 10 generations to determine the effect on reproductive and growth traits in swine. Mass selection among boars (line TS) or random selection (line C) was practiced beginning with the F3 generation of a Large White x Landrace composite population. Population size in each line was 40 to 45 litters by 15 sires per generation. Responses were estimated by regressions on cumulative selection differentials for PWT and on generation number and by mixed-model derivative-free REML procedures. The realized heritability of PWT was .35 +/- .02 and the response per generation was 19 g (P < .01). Correlated responses in body weight were .95 +/- .37 (140 d) and 1.13 +/- .42 kg (160 d) per generation for boars and .70 +/- .32 (130 d) and .64 +/- .46 kg (180 d) per generation for gilts. Response in backfat was .08 +/- .14 mm per generation in boars and .16 +/- .14 mm in gilts. Negative genetic trends occurred in age at puberty in both lines, but the difference between lines was not significant. At Generation 10, ovulation rate was .76 +/- .43 eggs more for gilts of the TS line than for C gilts. Genetic correlations of PWT with other traits are presented. Heritability of PWT was moderately high and its phenotypic variance was large; therefore, a high rate of response of 5.5% per generation occurred. Selection for PWT was not effective in decreasing age at puberty or increasing ovulation rate of daughters.

A microsatellite linkage map of the porcine genome.

We report the most extensive genetic linkage map for a livestock species produced to date. We have linked 376 microsatellite (MS) loci with seven restriction fragment length polymorphic loci in a backcross reference population. The 383 markers were placed into 24 linkage groups which span 1997 cM. Seven additional MS did not fall into a linkage group. Linkage groups are assigned to 13 autosomes and the X chromosome (haploid n = 19). This map provides the basis for genetic analysis of quantitative inheritance of phenotypic and physiologic traits in swine.

Influence of major histocompatibility complex on reproduction and production traits in swine

The effects of the swine lymphocyte antigen (SLA) system on different performance traits were investigated in Swiss pig breeds. Litter size and piglet weight at birth and at weaning were considered and in gilts the average daily weight gain, backfat and muscle thickness as well as percentage valuable cuts were measured. These data were analysed with least squares procedures. Although the effect of SLA on these traits was very small, a few haplotypes seemed to have some influence. Sows of the Large White breed carrying H12 had a significant smaller and those with H24 had a bigger litter size at weaning. Some mating studies were performed to investigate the effects of SLA homozygosity. The obtained results suggest that this has a negative effect on the litter size, especially when H19 in the Large White breed and H7 in Landrace are involved.

The effect of human growth hormone-releasing factor or porcine somatotropin on serum hormones and metabolites, growth performance and carcass traits in swine.

Forty barrows (77.9 +/- 5.5 kg BW) were allotted to one of five treatment groups to examine the effects of various doses of human growth hormone-releasing factor (1-44)NH2 (hGRF) or porcine somatotropin (pST) administered twice daily on serum hormones and metabolites, performance and carcass traits. Barrows were injected s.c. with either a placebo, 10 micrograms hGRF.kg BW-1.12 h-1, 20 micrograms hGRF.kg BW-1.12 h-1, 20 micrograms pST.kg BW-1.12 h-1 or 40 micrograms pST.kg BW-1.12 h-1 for a 36-d growth trial. Blood samples were collected from 13 barrows at intervals for 360 min after injection on d 21. Compared with the placebo, 10 micrograms hGRF.kg-1.12 h-1 increased (P less than .01) serum pST and insulin and decreased (P less than .001) urea N. Injecting 20 micrograms hGRF/kg.12 h-1 elevated (P less than .001) serum pST, insulin and insulin-like growth factor-I (IGF-I) but lowered (P less than .001) urea N. Exogenous pST increased (P less than .001) serum pST, insulin, IGF-I and glucose but decreased (P less than .001) urea N. Growth rate tended to increase, and feed intake and feed/gain decreased, in a dose-related manner in response to hGRF. Also, pigs receiving 10 or 20 micrograms hGRF.kg-1.12 h-1 had reduced (P less than .1) backfat and increased (P less than .1) loineye area and percentage lean in the ham compared with pigs receiving the placebo. At equal doses, pST elicited more dramatic improvements in performance and carcass criteria than did hGRF.(ABSTRACT TRUNCATED AT 250 WORDS)

Comparison of early castration at day 1, 7 or 14 on growth and carcass traits in swine

A 2-phase study was conducted to compare the influence of early castration at Day 1 (day of birth), 7 or 14 on performance and carcass traits in swine. In Phase I, postweaning growth and carcass measurements were recorded on 228 barrows. No significant differences in postweaning growth were found between the 3 treatments; however, less feed per kg of gain ( P < 0.10) was required by Day 14 as compared with Day-1 barrows. Day-1 castrates had significantly longer carcasses and more carcass backfat than their Day-14 counterparts. Although percent muscle was higher ( P < 0.10) for Day-14 vs. Day-1 barrows, there were no significant differences for either carcass weight or loin muscle area. Phase II utilized 57 pigs and was initiated to measure castration effects on preweaning growth and serum testosterone levels. As was expected, testosterone levels measured on Day 1 were the same for all 3 treatments. At Days 7 and 14, testosterone levels were higher ( P < 0.01) in the remaining uncastrated groups. Castration had no significant influence on preweaning growth as measured by body weight on Days 1, 7, 14 and 21.

Components of Variance and Covariance for Reproductive Traits in Swine Estimated from Yorkshire Field Data

Components of Variance and Covariance for Reproductive Traits in Swine Estimated from Yorkshire Field Data

Effect of ascorbic acid supplementation on performance and foot-leg traits in swine

Seventy-three boars were randomly allotted to two dietary treatments: (1) a basal; (2) basal plus ascorbic acid (500 mg kg −1) diet. The performance test started with boars averaging 39 kg body weight and ended at 105 kg. Boars were scored on foot and leg traits at the start and end of the test. Supplemental ascorbic acid did not affect performance traits or the composite soundness score. Only straightness of front legs was improved by supplemental ascorbic acid. Starting slope of front pasterns and starting composite soundness score had the highest correlation coefficients with ending composite soundness score (0.46 and 0.55, respectively).