In this study, VLE data for five binary systems comprising n-octane, n-nonane, methylcyclopentane, and methylcyclohexane were measured using the total pressure method at 393.15 K, 433.15 K, and 473.15 K. The NRTL-HOC and the UNIQUAC-HOC models were used to successfully correlate all VLE data and determine binary interaction parameters. No azeotropic behavior was observed in any of the binary systems under the operating conditions. The predictive UNIFAC-DMD and COSMO-SAC models were implemented to predict binary VLE phase diagram and unveiled the mechanism of the separation efficiency of alkanes–cycloalkanes. Through the examination of the COSMO-SAC based molecular surface charge profile (σ-profile), the variance in non-hydrogen bonding segments within the σ-profiles of the analyzed alkanes determines both the strength of electrostatic interactions and the temperature-dependent VLE separation behaviors. The results indicate that σ-profile could be suggested as a good indicator to assess operating conditions of the alkanes VLE separation.