Background Beta-thalassemia major is associated with increased cardiovascular risk, although the underlying mechanisms remain unclear. We examined endothelial function and serum levels of inflammatory mediators in transfusion-dependent patients with beta-thalassemia major. Methods The study population consisted of 67 patients with homozygous beta-thalassemia major, (aged 24.6±0.7 years) and 71 healthy age and sex matched controls. Forearm blood flow was measured with gauge-strain plethysmography. Forearm vasodilatory response to reactive hyperemia (RH%) or to nitrate (NTG%) was expressed as the percentage change of forearm blood flow from baseline to the maximum flow during reactive hyperemia or sublingual nitroglycerin, respectively. Serum levels of interleukin 6 (IL-6), soluble vascular cell adhesion molecule (sVCAM-1) and soluble intercellular adhesion molecule (sICAM-1) were determined with ELISA. Results Patients had significantly lower levels of total cholesterol (125±4.5 vs. 207±7 mg/ml, p<0.01), ApoA1 (120±3 vs. 129±5 mg/ml, p<0.05), ApoB (60.5±2 vs. 95±4 mg/ml, p<0.01), ApoE (3±2 vs. 4±0.2 mg/ml, p<0.01) and Lp(a) (7.9±1.3 vs. 14.5±3.2 mg/ml, p<0.01) than controls. IL-6 levels were significantly higher in patients (3.03±0.31 pg/ml) than controls (1.15±0.15 pg/ml, p<0.01). Similarly, sVCAM-1 and sICAM-1 levels were significantly higher in patients (513±31 and 368±25.5 ng/ml, respectively) than controls (333±13.8 and 272±14.05 ng/ml, respectively, p<0.01 for both). Maximum hyperemic forearm blood flow and RH% were lower in patients (7.1±0.3 ml/100 ml tissue/min and 49±2.8%, respectively) than controls (8.26±0.32 ml/100 ml tissue/min and 86.3±5.57%, respectively, p<0.01 for both). Conclusions Beta-thalassemia major is associated with impaired endothelial function and increased levels of IL-6, sVCAM-1 and sICAM-1, suggesting a potential role of inflammation and endothelial dysfunction in the complications of the disease.