Total Root Length Research Articles

Arbuscular Mycorrhizal Fungi, Especially Rhizophagus intraradices as a Biostimulant, Improve Plant Growth and Root Columbin Levels in Tinospora sagittata

Tinospora sagittata is a columbin-rich medicinal plant, but its columbin levels are reduced under artificial cultivation conditions. The objective of this study was to analyze the effects of inoculations with Diversispora versiformis (Dv), Funneliformis mosseae (Fm), Rhizophagus intraradices (Ri), and mixed inoculation (Dv + Fm + Ri) (Mix) on growth performance, root morphology, leaf photosynthetic physiology, and root columbin levels in T. sagittata. These arbuscular mycorrhizal fungi (AMF) were able to colonize the roots, as evidenced by a root mycorrhizal colonization rate ranging from 17% to 48% and soil hyphal lengths ranging from 17.51 cm/g to 32.02 cm/g, with the Mix treatment being the greatest. AMF inoculations improved plant height (16–151%), leaf number (119–283%), shoot (37–211%), and root biomass (22–318%) to varying extents, with Ri and Mix treatments being the most prominent. AMF-treated plants presented relatively greater root total length, projected area, surface area, volume, and average diameter, especially those treated with Ri and Mix. AMF inoculations also significantly improved the leaf nitrogen balance index, transpiration rate, and stomatal conductance, while the photosynthesis rate and chlorophyll index varied by AMF species, along with a decrease in intercellular CO2 levels. Root columbin levels ranged from 0.524 mg/g to 5.389 mg/g, and AMF inoculation significantly increased root columbin levels by 228–928%, with Ri being the most significant. Root columbin levels were significantly positively correlated with soil hyphal length, root total length, root projected area, root surface area, root volume, and root average diameter, but not root AMF colonization rate. This study demonstrates for the first time that AMF, especially Ri, can be employed as a biostimulant to promote growth as well as root columbin levels in T. sagittata, where AMF-triggered improvement in root morphology is an important reason for promoting root columbin levels.

LEADER (Leaf Element Accumulation from DEep Roots): A nondestructive phenotyping platform to estimate rooting depth in the field

AbstractDeeper rooted crops are an avenue to increase plant water and nitrogen uptake under limiting conditions and increase long‐term soil carbon storage. Measuring rooting depth, however, is challenging due to the destructive, laborious, or imprecise methods that are currently available. Here, we present LEADER (Leaf Element Accumulation from DEep Roots) as a method to estimate in‐field root depth of maize plants. We use both X‐ray fluorescence (XRF) spectroscopy and ICP‐OES (inductively coupled plasma optical emission spectroscopy) to measure leaf elemental content and relate this to metrics of root depth. Principal components of leaf elemental content correlate with measures of root length in four genotypes (R2 = 0.8 for total root length), and we use linear discriminant analysis to classify plants as having different metrics related to root depth across four field sites in the United States. We can correctly classify the plots with the longest root length at depth (deeper than 30 or 40 cm) with high accuracy (accuracy >0.6) at two of our field sites (Hancock, WI and Rock Spring, PA). We also use strontium (Sr) as a tracer element in both greenhouse and field studies, showing that elemental accumulation of Sr in leaf tissue can be measured with XRF and can estimate root depth. We propose the adoption of LEADER as a tool for measuring root depth in different plant species and soils. LEADER is faster and easier than any other methods that currently exist and could allow for extensive study and understanding of deep rooting.

Screening of Auxin-like Substances among Synthetic Compounds, Derivatives of Pyridine and Pyrimidine

The effect of known synthetic compounds Ivin (N-oxide-2,6-dimethylpyridine), Methyur (sodium salt of 6-methyl-2-mercapto-4-hydroxypyrimidine), Kamethur (potassium salt of 6-methyl-2-mercapto-4-hydroxypyrimidine) and new synthetic compounds, derivatives of pyrimidine (No. 1 - 7) on the rooting of isolated stem cuttings of haricot bean (Phaseolus vulgaris L.) variety Bilozernaya was studied. The growth regulatory activity of synthetic compounds Ivin, Methyur, Kamethur, and synthetic compounds, derivatives of pyrimidine (No. 1 - 7) was compared with the activity of auxins IAA (1H-indol-3-yl)acetic acid) and NAA (1-naphthylacetic acid). The conducted studies showed that the regulatory effect of synthetic compounds Ivin, Methyur, Kamethur, and synthetic compounds, derivatives of pyridine (No. 1 - 7) on the rooting of isolated stem cuttings of haricot bean was similar to the auxins IAA and NAA. The synthetic compounds Ivin, Methyur, and Kamethur, and synthetic compounds, derivatives of pyrimidine (No. 1, 4, 5, and 7) showed the highest auxin-like activity. The indicators of the total number of roots (pcs) and total length of roots (cm) obtained on isolated stem cuttings of haricot bean immersed in a water solution of synthetic compounds Ivin, Methyur, Kamethur and synthetic compounds, derivatives of pyridine (No. 1, 4, 5 and 7), used at a concentration of 10-7 M, statistically significantly exceeded similar indicators obtained on control isolated stem cuttings of haricot bean immersed in distilled water. The practical use of synthetic compounds Ivin, Methyur, Kamethur, and synthetic compounds, derivatives of pyrimidine (No. 1, 4, 5 and 7) is proposed to improve the vegetative propagation of haricot bean plants (Phaseolus vulgaris L.) and other plant species of the family Fabaceae by stem cuttings.

Elucidation of the Mechanism of Rapid Growth Recovery in Rice Seedlings after Exposure to Low-Temperature Low-Light Stress: Analysis of Rice Root Transcriptome, Metabolome, and Physiology.

Late spring cold is a disastrous weather condition that often affects early rice seedlings in southern China, limiting the promotion of direct seeding cultivation. However, there are few reports on the effect of these events and on the growth recovery mechanism of rice root systems after rice seedlings are exposed to this stress. This study selected the strong-growth-recovery variety B116 (R310/R974, F17) and the slow-recovery variety B811 (Zhonghui 286) for direct seeding cultivation and exposed them to low temperature and low-light stress to simulate a late spring cold event in an artificial climate chamber. The treatment consisted of 4 days of exposure to a day/night temperature of 14/10 °C and a light intensity of 266 µmol m-2s-1 while the control group was kept at a day/night temperature of 27/25 °C and light intensity of 533 µmol m-2s-1. The results showed that 6 days after stress, the total length, surface area, and volume of B116 roots increased by 335.5%, 290.1%, and 298.5%, respectively, while those of B811 increased by 228.8%, 262.0%, and 289.1%, respectively. In B116, the increase in root fresh weight was 223.1%, and that in B811 was 165.6%, demonstrating rapid root recovery after stress and significant differences among genotypes. The content of H2O2 and MDA in the B116 roots decreased faster than that in the B811 roots after normal light intensity and temperature conditions were restored, and the activity of ROS metabolism enzymes was stronger in B116 roots than in B811 roots. The correlation analysis between the transcriptome and metabolome showed that endogenous signal transduction and starch and sucrose metabolism were the main metabolic pathways affecting the rapid growth of rice seedling roots after exposure to combined stress from low temperature and low light intensities. The levels of auxin and sucrose in the roots of the strong-recovery variety B116 were higher, and this variety's metabolism was downregulated significantly faster than that of B811. The auxin response factor and sucrose synthesis-related genes SPS1 and SUS4 were significantly upregulated. This study contributes to an understanding of the rapid growth recovery mechanism in rice after exposure to combined stress from low-temperature and low-light conditions.

Heterologous Expression of a Ferritin Homologue Gene PpFer1 from Prunus persica Enhances Plant Tolerance to Iron Toxicity and H2O2 Stress in Arabidopsis thaliana.

In plants, ferritin proteins play an important role in iron (Fe) storage which contributes to plant growth and development. However, the biological functions of ferritins in fruit trees are essentially unknown. In this study, three Ferritin genes were isolated from 'Zhentong No. 3' peach, which were named PpFer1-PpFer3. The expression levels of these genes were different in distinct tissues/organs. Notably, PpFer1 was the most abundantly expressed Ferritin family gene in all tested tissues of 'Zhentong No. 3' peach; its expression levels were significantly enhanced throughout the entire peach seedling under Fe toxicity and H2O2 stress, particularly in the leaves. In addition, over-expression of PpFer1 was effective in rescuing the retarded growth of Arabidopsis fer1-2 knockout mutant, embodied in enhanced fresh weight, primary root length, lateral root numbers, total root length, total leaf chlorophyll, stomatal conductance (Gs), net photosynthetic rate (Pn), transpiration rate, and tissue Fe concentration. This study provides insights into understanding the molecular mechanisms of Fe storage and sequestration in perennial fruit trees.

Shoot and root responses to low phosphorus and their genotypic variability in selected cultivars of Japanese core collections of maize and soybean

ABSTRACT Low phosphorus (P) stress in agricultural soils is a global problem in crop production. A greater understanding of the genotype-specific responses under low P stress is imperative for producing P-efficient genotypes. This study first evaluated Japanese core collections of maize (86 landraces) and soybean (94 landraces) to low P under hydroponic conditions. Ten cultivars of each species were further evaluated in a pot experiment with two P supply rates: low P (10 mg P kg−1) and high P (50 mg P kg−1). Root morphology, acid phosphatase (ACP) activity, and rhizosphere soil pH were characterized 30 days after planting. A sufficient genotypic variation was found in both species under both P conditions. A significant decrease in biomass, except in maize cultivar JMC 76 and soybean cultivar GmJMC033, and increased phosphorus use efficiency (PUE) under low P conditions were observed. The maize cultivars: JMC 76, JMC 57, JMC 58, and JMC 8 and soybean cultivars: GmJMC033, GmJMC040, and GmJMC085 showed distinctive root modifications characterized by the high root-to-shoot ratio (RRS), total root length (TRL) and specific root length (SRL) under low P stress indicating their low P tolerance. Maize had more significant ACP activity compared to soybean under low P stress. The maize cultivars, which showed low P tolerance, were highly dependent on root morphological traits rather than physiological traits (ACP activity, rhizosphere acidification, and PUE), whereas soybean cultivars were dependent on both traits. In conclusion, the plasticity of the root system is crucial in both maize and soybean to tolerate P deficiency. These genotype-specific adaptations could be combined with agronomic strategies to enhance the overall P-use efficiency in cropping systems.

Pattern of Lead Accumulation in Two Vegetable Plants Due to EDTA Treatment

Phytoextraction and phytostabilization are the most consistent patterns or mechanisms of action of phytoremediation. One of the elements influencing the mechanism of action of heavy metal absorption by plant species is Ethylene Diamine Tetraacetic Acid (EDTA). Therefore, this study aimed to determine the pattern of phytoremediation in water spinach and spinach due to the addition of EDTA in the soil. The treatments tested by factor 1 were water spinach (T1) and spinach (T2), and factor 2 was the concentration of EDTA consisting of 3 levels, 0, 3, and 6 g/polybag. Each treatment was repeated three times on five sample plants. Furthermore, growth evaluation was carried out in the first six days after planting and conducted every 3 days. It was carried out on variables such as changes in plant height, leaves area, total root length, Pb content in the soil, fresh and dry weight of shoots and roots, shoot, seeds, and Translocation Factor (TF). The results showed that water spinach and spinach had different mechanisms of action due to the application of EDTA in Pb-contaminated media. Furthermore, water spinach and spinach have a mechanism of phytoextraction and phytostabilization, respectively. Therefore, spinach is safer than water spinach when grown in Pb-polluted land.

Impact of Fusarium Crown Rot on Root System Area and Links to Genetic Variation within Commercial Wheat Varieties

Fusarium crown rot (FCR), caused by the fungal pathogen Fusarium pseudograminearum (Fp), is a major constraint to cereal production worldwide. The pathogen restricts the movement of solutes within the plant due to mycelial colonisation of vascular tissue. Yield loss and quality downgrades are exacerbated by this disease under water stress conditions. Plant root systems are adaptive and can alter their architecture to optimise production in response to changes in environment and plant health. This plasticity of root systems typically favours resource acquisition of primarily water and nutrients. This study examined the impact of FCR on the root system architecture of multiple commercial bread and durum wheat varieties. Root system growth was recorded in-crop in large transparent rhizoboxes allowing visualization of root architecture over time. Furthermore, electrical resistivity tomography was used to quantify spatial root activity vertically down the soil profile. Results demonstrated a significant reduction in the total root length and network area with the inoculation of FCR. Electrical resistivity measurements indicated that the spatial pattern of water use for each cultivar was influenced differently from infection with FCR over the growing season. Specifically temporal water use can be correlated with FCR tolerance of the varieties marking this investigation the first to link root architecture and water use as tolerance mechanisms to FCR infection. This research has implications for more targeted selection of FCR tolerance characteristics in breeding programs along with improved specific varietal management in-crop.

Nutrient Solution Flowing Environment Affects Metabolite Synthesis Inducing Root Thigmomorphogenesis of Lettuce (Lactuca sativa L.) in Hydroponics

The principal difference between hydroponics and other substrate cultivation methods is the flowing liquid hydroponic cultivation substrate. Our previous studies have revealed that a suitable flowing environment of nutrient solution promoted root development and plant growth, while an excess flow environment was unfavorable for plants. To explain the thigmomorphogenetic response of excess flow-induced metabolic changes, six groups of lettuce (Lactuca sativa L.), including two flow conditions and three time periods, were grown. Compared with the plants without flow, the plants with flow showed decreased root fresh weight, total root length, root surface area, and root volume but increased average root diameter and root density. The roots with flow had more upregulated metabolites than those without flow, suggesting that the flow may trigger metabolic synthesis and activity. Seventy-nine common differential metabolites among six groups were screened, and enrichment analysis showed the most significant enrichment in the arginine biosynthesis pathway. Arginine was present in all the groups and exhibited greater concentrations in roots with flow than without flow. It can be speculated from the results that a high-flowing environment of nutrient solution promotes arginine synthesis, resulting in changes in root morphology. The findings provide insights on root thigmomorphogenesis affected by its growing conditions and help understand how plants respond to environmental mechanical forces.

Boron deficiency responses in maize (Zea mays L.) roots

AbstractBackgroundBoron (B) is an essential micronutrient for plants. Dicot plants respond to insufficient B supply by altering root architecture and root hair growth. How root systems of rather low‐B demanding monocot species such as maize (Zea mays L.) respond to B deficiency in terra has not been experimentally resolved, yet.AimsThe study aims to investigate root responses and their physiological consequences under B deficiency during the vegetative growth of maize.MethodsB73 wild‐type (WT) maize and its root hairless rth3 mutant were grown under varying B supply conditions in soil columns and in an automated root phenotyping facility. Biomass data, root system architecture traits, the mineral elemental composition and molecular B‐deficiency responses were quantified.ResultsThough having very low leaf B concentrations, no major growth deficit, apart from chlorotic stripes on leaves, was recorded on maize root and shoot development, with or without root hairs, on B‐deficient conditions. Although leaf B concentration of the rth3 mutant is significantly lower under B‐deficient and under B‐surplus conditions compared to the WT, the rth3 mutant neither developed a larger total root length, more fine roots nor displayed a higher expression of B uptake transporters as compensatory adaptations.ConclusionsStrikingly, maize plants did neither react with an inhibited root growth nor by a compensatory root foraging behaviour to severe B‐deficient in terra growth conditions. This is rather atypical for plants. The performance and altered leaf B concentrations of rth3 mutants may be biased by secondary effects, such as an overall reduced root growth.

Protein biomarkers for root length and root dry mass on chromosomes 4A and 7A in wheat

Improving the wheat (Triticum aestivum L.) root system is important for enhancing grain yield and climate resilience. Total root length (RL) and root dry mass (RM) significantly contribute to water and nutrient acquisition directly impacting grain yield and stress tolerance. This study used label-free quantitative proteomics to identify proteins associated with RL and RM in wheat near-isogenic lines (NILs). NIL pair 6 had 113 and NIL pair 9 had 30 differentially abundant proteins (DAPs). Three of identified DAPs located within the targeted genomic regions (GRs) of NIL pairs 6 (qDT.4A.1) and 9 (QHtscc.ksu-7A), showed consistent gene expressions at the protein and mRNA transcription (qRT-PCR) levels for asparagine synthetase (TraesCS4A02G109900), signal recognition particle 19 kDa protein (TraesCS7A02G333600) and 3,4-dihydroxy-2-butanone 4-phosphate synthase (TraesCS7A02G415600). This study discovered, for the first time, the involvement of these proteins as candidate biomarkers for increased RL and RM in wheat. However, further functional validation is required to ascertain their practical applicability in wheat root breeding. Significance of the studyClimate change has impacted global demand for wheat (Triticum aestivum L.). Root traits such as total root length (RL) and root dry mass (RM) are crucial for water and nutrient uptake and tolerance to abiotic stresses such as drought, salinity, and nutrient imbalance in wheat. Improving RL and RM could significantly enhance wheat grain yield and climate resilience. However, breeding for these traits has been limited by lack of appropriate root phenotyping methods, advanced genotypes, and the complex nature of the wheat genome. In this study, we used a semi-hydroponic root phenotyping system to collect accurate root data, near-isogenic lines (NILs; isolines with similar genetic backgrounds but contrasting target genomic regions (GRs)) and label-free quantitative proteomics to explore the molecular mechanisms underlying high RL and RM in wheat. We identified differentially abundant proteins (DAPs) and their molecular pathways in NIL pairs 6 (GR: qDT.4A.1) and 9 (GR: QHtscc.ksu-7A), providing a foundation for further molecular investigations. Furthermore, we identified three DAPs within the target GRs of the NIL pairs with differential expression at the transcript level, as confirmed by qRT-PCR analysis which could serve as candidate protein biomarkers for RL and RM improvement.

Relationship between the trait response of aboveground and belowground parts of dominant plant species to groundwater depth change in Horqin Sandy Land, eastern China

Climate change and human development will lead to an increase in groundwater levels. This will have a particularly severe impact on arid ecosystems that are highly dependent on groundwater, as overconsumption and pollution of water resources can lead to faster depletion of groundwater. This not only exacerbates the problem of groundwater scarcity, but also may have profound impacts on local ecological environment and biodiversity. However, previous research has focused on aboveground trait responses to precipitation deficits, with less emphasis on concomitant belowground impacts and deep soil drought from groundwater depletion. Therefore, it remains unclear how groundwater depletion affects above and belowground traits of plant to jointly regulate aboveground biomass. In this study, we assessed morphological and ecophysiological traits of two dominant species (herb: Pennisetum centrasiaticum and shrub: Artemisia halodendron) across three groundwater depth (50 cm, 100 cm, and 200 cm) in the Horqin Sandy Land in China, within which photosynthetic rate (Photo), stomatal conductance (Cond), transpiration rate (Tr), internal CO2 concentration (Ci), instantaneous water-use efficiency of leaves (Lwue), total nitrogen (LN) and phosphorus (LP) content of the leaves, root to shoot ratio (RSR), root length density (RLD), total root length (RTL), root length ratio (RLR) were measured. The result showed that the two species growing with increased groundwater depth had reduced photosynthetic rate, and regulated stomatal close to aggregate ability of instantaneous water use efficiency, which may allow plants to meet resource demands under drought stress avoiding transpiration water loss. Plants also reduced the density of all roots and adjusted the vertical distribution of coarse root by changing biomass distribution to acquire deeper soil available water. Correlation analysis showed that the vital traits for aboveground biomass responses appear to be groundwater depth, soil moisture, leaf area, photosynthesis, water use efficiency, and root traits. Overall, the biomass production response of two dominant species may be greatly influenced by the interaction between aboveground and belowground traits in response to changes in groundwater depth. This result contributes to our understanding of adaptive strategies of vegetation in sandy soils and provides additional support for enhancing vegetation productivity in semi-arid ecosystems. The ability of semi-arid ecosystems to predict vegetation dynamics under current and future increasing groundwater depths is crucial.

Exploring the Root Morphological Traits of Diverse-Origin Cultivated Soybean

Root morphological traits (RMTs) profoundly influence plant growth, resilience to abiotic stresses, and yield in soybean (Glycine max). In a comprehensive study spanning two consecutive years (2021–2022), the RMTs were assessed in 216 soybean accessions from 34 diverse origins. The investigation involved randomized batches with plants cultivated in PVC pipes filled with horticultural soil and harvested at the V2 growth stage. All the germplasms exhibited significant differences (p < 0.001) in all measured traits, i.e., total root length (TRL), root volume (RV), average diameter (AD), number of tips (NT), number of forks (NF), and tertiary total length (TTL). Among the top 5% performers in TRL, which, interestingly, were exclusively of Korean origin, germplasm IT115491 displayed an impressive average TRL value of 1426.24 cm. Notably, germplasms from Serbia and Korea predominantly occupied the upper AD quantile, with IT156262 exhibiting the highest AD value of 0.57 mm. A correlation analysis showed strong positive associations of TRL with RV (r = 0.85), NT (r = 0.84), NF (r = 0.96), and TTL (r = 0.88), whereas it had a negative association with AD (r = −0.25). A principal component analysis (PCA) showed a cumulative 95% of the total variance in the data in the first three principal components (PCs). PC1 (eigenvalue = 4.64) accounted for a 77.00% variance, with TRL, RV, NF, NT, and TTL exhibiting the highest associated eigenvectors. K-means clustering was performed with three clusters. Cluster 2 contained accessions with higher AD values, whereas Cluster 3 comprised accessions with increased TRL, NT, NF, and TTL, which mostly originated from Korea. Our findings offer targeted insights for plant breeders to optimize specific root traits and enhance crop performance across diverse environmental conditions by strategically targeting these clusters. Additionally, the influence of cultivar origin on root traits warrants further investigation, with implications for future breeding programs.

Mulched drip irrigation and maize straw biochar increase peanut yield by regulating soil nitrogen, photosynthesis and root in arid regions

Biochar has been increasingly recognized as a valuable soil conditioner, which is beneficial to peanut yield improvement. We conducted a three-year field experiment to investigate the effect of biochar applied at three rates (0 t ha−1 (B0), 24 t ha−1 (B1), and 48 t ha−1 (B2), which were 0%, 1%, 2% of the soil mass) on diurnal variation of net photosynthetic rate, soil available nitrogen (N), root characteristics, and peanut yield under two irrigation methods: CK (drip irrigation) and MDI (mulched drip irrigation). A biochar application rate of 24 t ha−1 (B1) increased soil available N, net photosynthetic rate of leaves, and relative chlorophyll values (SPAD) compared to B0. B1 increased total root length, root surface area, root volume and root bleeding sap (RBS) by 8.5∼29.9%, 13.5∼18.5%, 0.8∼12.1%, and 27.6–45.9%, respectively, compared to B0. Significant correlations between grain yield, SPAD, and RBS indicated that biochar enhanced grain yield by improving photosynthesis and root activity. For the irrigation treatments, MDI significantly increased peanut yield, net photosynthetic rate, and RBS, but had no significant effect on soil available N. High biochar application under MDI (IMDIB2) reduced peanut yield in 2020. Moderate biochar application under MDI (IMDIB1) had the highest peanut yield in three years. These results showed that 24 t ha−1 biochar combined with MDI achieved the highest soil available N, root development, and net photosynthetic rate thus which resulted in the highest grain yield, and this could be a management strategy to increase peanut yield.

Tobacco roots increasing diameter and secondary lateral density in response to drought stress

Exploring the responses of root morphology and its physiological mechanisms under drought stress is significant for further improving water and nutrient absorption in roots. Here, we simulated drought through hydroponics combined with PEG treatments in tobacco to characterize the changes in tobacco root architecture. Our results showed the total root length, first lateral root number, and first lateral root length were significantly reduced upon increasing drought severity, but the average root diameter and secondary lateral root density increased under certain drought conditions. The change of auxin content in roots under drought stress was correlated with the root diameter and second lateral root density responses. Exogenous addition of the auxin analog (NAA) and the auxin transport inhibitor (NPA), as well as DR5:GUS staining experiments further demonstrated that auxin participated in this physiological process. Meanwhile, brassinolide (BR) exhibited a similar trend. Exogenous addition of BR (EBR) and the BR synthesis inhibitor BRZ experiments demonstrated that BR may participate upstream of auxin under drought stress. PEG treatment significantly up-regulated NtBRI1 at 9–24 h, and promoted the up-regulation of NtBSK2 and NtBSK3 at 48 h and 24 h, respectively, these genes may contribute to the change in root morphology under drought stress. This study shows that auxin and BR are involved in the changes in root morphology in tobacco exposed to drought stress. The elucidation of the molecular mechanism at play thus represents a future target for breeding drought-tolerant tobacco varieties.

Dynamic transcriptome analysis unravels key regulatory genes of maize root growth and development in response to potassium deficiency

Main conclusionIntegrated root phenotypes and transcriptome analysis have revealed key candidate genes responsible for maize root growth and development in potassium deficiency.Potassium (K) is a vital macronutrient for plant growth, but our understanding of its regulatory mechanisms in maize root system architecture (RSA) and K+ uptake remains limited. To address this, we conducted hydroponic and field trials at different growth stages. K+ deficiency significantly inhibited maize root growth, with metrics like total root length, primary root length, width and maximum root number reduced by 50% to 80% during early seedling stages. In the field, RSA traits exhibited maximum values at the silking stage but continued to decline thereafter. Furthermore, K deprivation had a pronounced negative impact on root morphology and RSA growth and grain yield. RNA-Seq analysis identified 5972 differentially expressed genes (DEGs), including 17 associated with K+ signaling, transcription factors, and transporters. Weighted gene co-expression network analysis revealed 23 co-expressed modules, with enrichment of transcription factors at different developmental stages under K deficiency. Several DEGs and transcription factors were predicted as potential candidate genes responsible for maize root growth and development. Interestingly, some of these genes exhibited homology to well-known regulators of root architecture or development in Arabidopsis, such as Zm00001d014467 (AtRCI3), Zm00001d011237 (AtWRKY9), and Zm00001d030862 (AtAP2/ERF). Identifying these key genes helps to provide a deeper understanding of the molecular mechanisms governing maize root growth and development under nutrient deficient conditions offering potential benefits for enhancing maize production and improving stress resistance through targeted manipulation of RSA traits in modern breeding efforts.

Genome-wide linkage mapping of root system architecture-related traits in common wheat (Triticum aestivum L.).

Identifying loci for root system architecture (RSA) traits and developing available markers are crucial for wheat breeding. In this study, RSA-related traits, including total root length (TRL), total root area (TRA), and number of root tips (NRT), were evaluated in the Doumai/Shi4185 recombinant inbred line (RIL) population under hydroponics. In addition, both the RILs and parents were genotyped using the wheat 90K single-nucleotide polymorphism (SNP) array. In total, two quantitative trait loci (QTLs) each for TRL (QTRL.caas-4A.1 and QTRL.caas-4A.2), TRA (QTRA.caas-4A and QTRA.caas-4D), and NRT (QNRT.caas-5B and QNRT.caas-5D) were identified and each explaining 5.94%-9.47%, 6.85%-7.10%, and 5.91%-10.16% phenotypic variances, respectively. Among these, QTRL.caas-4A.1 and QTRA.caas-4A overlapped with previous reports, while QTRL.caas-4A.2, QTRA.caas-4D, QNRT.caas-5B, and QNRT.caas-5D were novel. The favorable alleles of QTRL.caas-4A.1, QTRA.caas-4A, and QTRA.caas-5B were contributed by Doumai, whereas the favorable alleles of QTRL.caas-4A.2, QTRA.caas-4D, and QTRA.caas-5D originated from Shi 4185. Additionally, two competitive allele-specific PCR (KASP) markers, Kasp_4A_RL (QTRA.caas-4A) and Kasp_5D_RT (QNRT.caas-5D), were developed and validated in 165 wheat accessions. This study provides new loci and available KASP markers, accelerating wheat breeding for higher yields.

Soil Water Deficit Reduced Root Hydraulic Conductivity of Common Reed (Phragmites australis).

Alterations in root hydraulics in response to varying moisture conditions remain a subject of debate. In our investigation, we subjected common reeds (Phragmites australis) to a 45-day treatment with four distinct soil moisture levels. The findings unveiled that, in response to drought stress, the total root length, surface area, volume, and average diameter exhibited varying degrees of reduction. Anatomically, drought caused a reduction in root diameter (RD), cortex thickness (CT), vessel diameter (VD), and root cross-sectional area (RCA). A decrease in soil moisture significantly reduced both whole- and single-root hydraulic conductivity (Lpwr, Lpsr). The total length, surface area, volume, and average diameter of the reed root system were significantly correlated with Lpwr, while RD, CT, and RCA were significantly correlated with Lpsr. A decrease in soil moisture content significantly influenced root morphological and anatomical characteristics, which, in turn, altered Lpr, and the transcriptome results suggest that this may be associated with the variation in the expression of abscisic acid (ABA) and aquaporins (AQPs) genes. Our initial findings address a gap in our understanding of reed hydraulics, offering fresh theoretical insights into how herbaceous plants respond to external stressors.

Maize, wheat, and soybean root traits depend upon soil phosphorus fertility and mycorrhizal status.

Strong effects of plant identity, soil nutrient availability or mycorrhizal fungi on root traits have been well documented, but their interactive influences on root traits are still poorly understood. Here, three crop species (maize, wheat and soybean) were grown under four phosphorus (P) addition levels (0, 20, 40 and 60mg P kg-1 dry soil), and plants were inoculated with or without five combined arbuscular mycorrhizal fungal (AMF) species. Plant biomass, nutrient contents, root traits (including total root length, average root diameter, specific root length and root tissue density) and plants' mycorrhizal responses were measured. Crop species, P level, AMF, and their interactions strongly affected plant biomass and root traits. P fertilization promoted plant growth but reduced mycorrhizal benefits on plant biomass and nutrient uptake. Root traits of maize were sensitive to P addition only under the non-mycorrhizal condition, whilst most root traits of soybean and wheat plants were responsive to mycorrhizal inoculation but not P addition. Mycorrhizal colonization reduced the root plasticity in response to P fertility for maize but not for wheat or soybean. This study highlights the importance of soil nutrient fertility and mycorrhizal symbiosis in influencing root traits.

Impact of root architecture and transpiration rate on drought tolerance in stay‐green sorghum

AbstractSorghum [Sorghum bicolor (L.) Moench] yield loss due to terminal drought stress is common in semiarid regions. Stay‐green is a drought adaptation trait, and a deeper understanding of stay‐green‐associated traits is necessary for sorghum breeding. We hypothesize that the stay‐green trait in sorghum may be associated with the root architecture and transpiration rate under drought stress. The objectives were to (i) identify the relationship among stay‐green‐associated traits, (ii) compare the root system architecture and transpiration rate of stay‐green (B35 and 296B) and senescent (BTx623 and R16) genotypes under drought stress, and (iii) quantify the impacts of reproductive stage drought stress on gas exchange and grain yield of stay‐green and senescent genotypes. A series of drought experiments were conducted with these genotypes. Under drought stress, the stay‐green genotypes had an increased total root length in the top 30–60 cm (18%) and 60–90 cm of soil (45%) than the senescent genotypes. In contrast, under progressive soil drying, stay‐green genotypes had a decreased transpiration rate (9%) than senescent genotypes by an early (∼1 h) partial closure of stomata under high vapor pressure deficit conditions. The increased seed yield (43%) in stay‐green genotypes is due to an increased photosynthetic rate (30%) and individual seed size (35%) than senescent genotypes. Overall, it is concluded that stay‐green phenotypes had two distinct drought adaptive mechanisms: (i) increased root length for increased soil exploration for water and (ii) an early decrease in the transpiration rate to conserve soil moisture. Identifying genomic markers for these traits would accelerate drought‐tolerant sorghum breeding.