This work proposes a filtering technique for the concurrent and sequential finite element-based topology and discrete fiber orientation optimization of composite structures. The proposed filter is designed to couple the morphology with the topology of the structural domain throughout the optimization process in a way such that it suppresses the impact of the close-to-void finite elements’ morphology on the overall morphology of the structure while steering at the same time the local fiber orientation towards the neighboring topologically dense areas of the geometry. The functionality of the filter becomes crucial at the boundaries of the optimized structure, where the fiber orientation is forced to conform to the morphology of the local boundaries. The developed filtering technique is incorporated into both the concurrent and sequential finite element-based topology and discrete fiber orientation optimization problem, and the respective optimization problems are formulated for the compliance minimization of the composite structure. To assess the efficacy of the filter, it is demonstrated in the benchmark academic case studies of the 2D Messerschmitt-Bölkow-Blohm and cantilever beams when different state-of-art interpolation techniques are employed for modeling the discrete fiber orientation optimization problem.