The joint Varenna-Lausanne international workshop on the theory of fusion plasmas took place in Varenna from August 29 to September 2 2016. Several issues of interest for fusion plasmas were addressed, namely MHD stability, RF heating, collisional and turbulent transport, plasma wall interaction, and physics of burning plasmas. The articles published in this special issue illustrate nicely the well balanced combination of physics, applied mathematics, and computer sciences that characterizes this workshop.Let us mention several attractive topics, which are addressed in this issue. The question of 3D MHD equilibrium in tokamaks has received a great deal of attention, in connection with external resonant magnetic perturbations in tokamaks, and also stochastic edge in stellarators. The reader will also find some recent developments related to the effect of current drive and heating on the stability of tearing modes. As usual, turbulent transport is addressed in much detail. Several papers address specific numerical aspects of fluid and gyrokinetic codes, including code optimisation. Physics issues are abundantly dealt with, such as the impact of fast particles on turbulence, and particle transport. New numerical techniques to model wave propagation are presented, which provide significant advances in the field. Refinements such as the effect of density fluctuation on wave propagation, or the interaction between particles and the electromagnetic field near antennas, have also been studied in depth. Finally, specific issues such as nonlocal transport, decay of zonal flows, and the effect of neutrals on rotation have been investigated.A striking feature of the 2016 edition was the large number of young faces among the participants. This is a great satisfaction for the organizers since a new generation of scientists is certainly needed whilst several devices come to operation, or will do so in a foreseeable future.The diversity and quality of the papers published in the present cluster prove once more that the Varenna-Lausanne meeting has a special place among the conferences on magnetic fusion energy. It is certainly an excellent forum for exchanging ideas on theory and modelling, and for advertising the best results obtained in that field.The present volume of Journal of Physics Conference Series contains 16 outstanding papers - all peer reviewed. Let us mention another set of about 20 papers to appear in Plasma Physics and Controlled Fusion. We hope the reader will appreciate this special issue and that it will be a source of inspiration for him.Xavier Garbet, Olivier Sauter November, 8 2016http://varenna-lausanne.epfl.ch