Integration of high ceramic yield, low shrinkage and excellent fracture toughness in polymer-derived ceramics (PDCs) is challenging. Highly cross-linked polycarbosilane-vinyltriethoxysilane-graphene oxide (PCS-VTES-GO, PVG) precursors spontaneously interact with dense high-strength SiC(rGO)p fillers for abundant Si-dangling bonds at their interfaces. Herein, an ingenious strategy via re-pyrolysis process of ball-milling-induced SiC(rGO)p/PVG blends is proposed to fabricate 3D-SiC(rGO)px PDCs. The in-situ formed innovative three-dimensional (3D) honeycomb cellular net-like structure, with dense β-SiC(SiO2)/SiOxCy/Cfree(rGO) framework providing high strength while tiny micro-sized pores relaxing stress at the tip, effectively improves molding process, ceramic yield and mechanical properties of PDCs. Particularly, lightweight 3D-SiC(rGO)p0.6 PDCs display dense surface, satisfactory hardness (3.96 GPa) and excellent fracture toughness (3.21 MPa m1/2), especially high ceramic yield (94.49%) and low linear shrinkage (5.00%), realizing outstanding values ever reported for PDCs to the best of our knowledge. During re-pyrolysis process, they have struck perfect balance and achieved a combination of equal volume of inwardly shrinking PVG precursors and outwardly expanding SiC(rGO)p fillers. For the first time, such synergistic effects of flexible PVG with rigid SiC(rGO)p in this way pave a practical route toward reliable mass-produced 3D-SiC(rGO)px PDCs with potential applications in emerging aerospace propulsion components.