Abstract Cardiotocography (CTG) is considered the gold standard for monitoring fetal heart rate (FHR) during pregnancy and labor to estimate the danger of oxygen deprivation. Visual interpretation of CTG traces is complex and frequently results in high rates of false positives and false negatives, leading to unfavorable and unwanted outcomes such as fetal mortality or needless cesarean surgery. If the data are well-balanced, which is uncommon in medical datasets, machine learning techniques can be helpful in interpretation. This study is designed to determine classification performance under various data balance approaches. We propose a robust methodology for the automated extraction of features that use a deep learning model based on the one-dimensional convolutional neural network (1D-CNN). We used a public database containing 552 intrapartum CTG recordings. Due to the imbalance in the dataset, the experiments were conducted under a variety of conditions such as (i) an unbalanced dataset, (ii) undersampling, (iii) a weighted binary cross-entropy approach, and (iv) oversampling utilizing the synthetic minority oversampling technique (SMOTE). We found an excellent sensitivity (99.80% for the unbalanced dataset, 96.25% for the weighted binary cross-entropy approach, and 99.81% with SMOTE) except for the under sampling situation, in which the sensitivity was 85.71%. Moreover, the 1D-CNN model incorporating SMOTE yielded promising results in 88% specificity, 93.72% quality index (QI), and 95.10% area under the curve. The model exhibited excellent performance in terms of sensitivity in every scenario except for undersampling. The oversampling of training data with SMOTE yielded a decent level of specificity, demonstrating the model’s strong predictive capacity. In addition, the SMOTE scenario resulted in fewer training epochs, which is another accomplishment.