This study investigates the interannual variations in regional mean sea levels (MSLs) of the northeast Asian marginal seas (NEAMS) during August, focusing on the role of typhoon activity from 1993 to 2019. The NEAMS are connected to the Pacific through the East China Sea (ECS) and narrow, shallow straits in the east, where inflow from the southern boundary (ECS), unless balanced by eastern outflow, leads to significant convergence or divergence, as well as subsequent changes in regional MSLs. Satellite altimetry and tide-gauge data reveal that typhoon-induced Ekman transport plays a key role in MSL variability, with increased inflow raising MSLs during active typhoon seasons. In contrast, weak typhoon activity reduces inflow, resulting in lower MSLs. This study’s findings have significant implications for coastal management, as the projected changes in tropical cyclone frequency and intensity due to climate change could exacerbate sea level rise and flooding risks. Coastal communities in the NEAMS region will need to prioritize enhanced flood defenses, early warning systems, and adaptive land use strategies to mitigate these risks. This is the first study to link typhoon frequency directly to NEAMS MSL variability, highlighting the critical role of wind-driven processes in regional sea level changes.