Clean fuel research, including into improvement of the processes of desulfurization and dearomatization, has become an important focus of environmental catalysis studies worldwide. Sulfur contained in diesel fuel is an environmental concern because the sulfur is converted to SOx during combustion, which not only contributes to acid rain, but also poisons the catalytic converters now widely installed for exhaust emission treatment. The problem of sulfur removal has become more apparent due to the high sulfur contents in crude oils and the low limit of sulfur content in finished fuel products specified by regulatory authorities. The Environmental Protection Agency of the United States (EPA) had set a target to reduce the sulfur content of diesel fuel from 500 ppm to 15 ppm for the year 2006 and 10 ppm will become the maximum content for sulfur by 2008 (Yang et al., 2005). Thiols, sulphides and thiophenes are readily removed by hydrodesulfurization (HDS), but up to 70% of the sulfur in petroleum is found as DBT and substituted (methylated) DBTs, which are particularly recalcitrant to HDS treatment compared with mercaptans and sulfides (Yang et al., 2005; Le Borgne et al., 2003). Microbiological methods to desulfurize hydrocarbon streams offer a potentially attractive alternative to traditional chemical engineering methods. Biological processes require relatively mild conditions (low pressures and low temperatures), which could be a major advantage of biodesulfurization. Therefore most studies on biodesulfurization (BDS) have focused on the removal of thiophenic sulfur compounds, of which DBT is widely accepted to be representative. DBT is indeed considered to be particularly relevant as a model compound for the forms of thiophenic sulfur found in fossil fuels, such as crude oils, coals or bitumen of particular geographic origins, and the various refining intermediates and fuel products manufactured therefrom (Olson, 1998). Various bacteria are able to metabolize DBT. In the 1970s, Kodama showed that microorganisms could attack DBT without removing sulfur (Scheme 1). This microbial transformation of DBT by the Kodama pathway involves cleavage of one of DBT’s aromatic rings so it has not been commercially developed because it did not remove the sulfur atom from the heterocyclic compound, and moreover led to a decrease in the fuel’s calorific value through the oxidation of benzene ring. Biodesulfurization of dibenzothiophene by Shewanella putrefaciens NCIMB 8768 F. Ansari,* P. Prayuenyong and I. Tothill 1 Microsystems & Nanotechnology Centre, Department of Materials, Cranfield University, Bedfordshire MK43 0AL, UK 2 Institute of Bioscience & Technology, Cranfield University, Cranfield Beds MK43 0AL, UK 3 Cranfield Health, Cranfield University, Bedfordshire MK43 0AL, UK