In the present research, the Schleyer hyperconjugative aromaticity was used to enhance the aromaticity of indene scaffolds. The first section of the research focused on examining the thermodynamic stability and electronic characteristics of the four structural isomers of indene. Results indicate that 1H-indene scaffolds are the most stable thermodynamic isomers of indene derivatives exceeding 100 kJ/mol. The hierarchy of stability is as follows: 1H-indenes > 2H-indenes > 5H-indenes > 4H-indenes. The aromaticity of 5- and 6-membered rings in the isomeric structures was investigated using the B3LYP/6–311 + G(d,p) method in the second section of the study. The hyperconjugative aromaticity of 5MR and 6MR was assessed using the harmonic oscillator model of aromaticity index, Bird index, Shannon index, aromatic fluctuation index, and the nucleus independent chemical shift. The results reveal that introducing electron-donating groups on 6MR enhances the aromaticity of 5MR. Moreover, adding two fluorine atoms on the Csp3 site negatively affects the aromaticity and induces antiaromaticity in the indene scaffold. Based on aromaticity data, the order of increasing aromaticity in the presence of different groups is F < CH3 < H < SiH3 < GeH3 < Si(CH3)3 < Ge(CH3)3. The extent of the Schleyer hyperconjugation interaction was also quantified using the E(2) parameter obtained from the NBO calculations.