Sulfur Cycle Research Articles

Characterization of DsrD and its interaction with the DsrAB dissimilatory sulfite reductase.

Microbial dissimilatory sulfate reduction is a key process in the global sulfur and carbon cycles in anoxic ecosystems. In this anaerobic respiration, sulfate is phosphorylated and reduced to sulfite, which is further reduced to a DsrC-trisulfide by the dissimilatory sulfite reductase DsrAB. DsrD is a small protein that acts as an allosteric activator of DsrAB, increasing the efficiency of sulfite reduction. Here, we report a detailed study of DsrD and its interaction with DsrAB. Sequence similarity analyses show that there are three groups of DsrD in organisms with a reductive-type DsrAB. The protein regions involved in the DsrD-DsrAB interaction and activity-promoting effect were investigated through in vitro and in silico studies, including mutations of conserved DsrD residues. The results reveal that the conserved β-loop of DsrD is involved in the interaction, contributing to a better understanding of its mechanism of action.

Pressure-tolerant survival mechanism of Schizophyllum commune 20R-7-F01 isolated from deep sediments 2 kilometers below the seafloor

In anaerobic high hydrostatic pressure (HHP) sedimentary environments below the seafloor, fungi are found to dominate the eukaryotic communities, playing crucial ecological roles. However, the specific mechanisms by which fungi adapt to anaerobic HHP environments remain unclear. In this study, we investigated Schizophyllum commune 20R-7-F01 isolated from coal-bearing sediments at a depth of 2 km below the seafloor. By assessing the cell viability, biomass, and cell wall thickness changes of strain 20-7-1 under different HHP conditions, we observed that, compared to 0.1 MPa, strain 20-7-1 exhibited slower growth rates and decreased cell viability at 15 MPa and 35 MPa, yet demonstrated significant pressure tolerance. Transcriptomic and metabolomic analyses revealed that this strain activated the carbohydrate metabolic process to simultaneously utilize ethanol and lactic acid fermentation pathway. Additionally, it activates the oxidoreductase activity and hydrolase activity pathways to detoxify intracellular reactive oxygen species (ROS). Activation of the metal ion binding pathway increases the proportion of unsaturated fatty acids in the cell membrane, while instigation of the integral component of membrane pathway maintains cell wall structural stability. Furthermore, activation of the DNA repair pathway repairs DNA damage, demonstrating its comprehensive adaptive mechanisms against the HHP stress. These research findings deepen our understanding of fungal survival strategies and adaptation mechanisms in extreme environments, laying the groundwork for further exploration of their roles in cycling of carbon, nitrogen, sulfur, and other elements in the deep biosphere.

Metagenomic Analysis of Microbial Diversity in the Moroccan Coastal Water of the Gibraltar Strait

Coastal waters are known for higher productivity and organic matter levels, which support a high diversity and abundance of microorganisms compared to some aquatic environments. The characterization of marine microbiomes can provide valuable information for evaluating the sustainability of coastal waters that are increasingly subjected to environmental and human impacts. Our study is the first metagenomic study realized on Moroccan Mediterranean coastal seawater. We analyzed and described the Gibraltar Detroit marine microbiome taxonomic and functional profiling using MG-RAST software. Shotgun sequencing revealed a predominance of bacterial taxa, particularly the Proteobacteria (57.29%) and Bacteroidetes (27.06%) phyla, alongside notable populations of eukaryotes, viruses, and archaea. Alphaproteobacteria and Gammaproteobacteria emerged as the dominant bacterial classes, while Flavobacteria represented a significant portion of Bacteroidetes. Functional profiling of the microbial community highlighted a wide array of metabolic pathways, emphasizing genes related to carbohydrate metabolism, amino acid synthesis, and protein processing. The marine microbiome exhibited essential biogeochemical activities, particularly in nitrogen, sulfur, and carbon cycles, with notable pathways including denitrification, thiosulfate oxidation, and carbon fixation. This functional diversity underlines the microbiome’s role in sustaining ecosystem health through nutrient cycling and organic matter degradation. Our findings offer a crucial baseline for understanding microbial community structure and resilience in Mediterranean coastal ecosystems, with implications for assessing future environmental and anthropogenic impacts on these microbial dynamics.

Electrochemical degradation of aromatic organophosphate esters: Mechanisms, toxicity changes, and ecological risk assessment

Aromatic organophosphate esters (AOPEs), including triphenyl phosphate (TPHP), tricresyl phosphate (TCP), and 2-ethylhexyl diphenyl phosphate (EHDPP), pose significant health and ecological risks. Electrochemical advanced oxidation process (EAOP) is effective in removing refractory pollutants. In this study, the degradation performance and detoxication ability of AOPEs by EAOP were investigated. Hydroxylation, oxidation, and bond cleavage products were identified as major degradation products (DPs) due to the reaction with ·OH and O₂·-. Toxicity assessments using ecological structure activity relationship (ECOSAR) model and flow cytometry (FCM) revealed the cytotoxicity and aquatic toxicity for DPs were significantly decreased. 16S rRNA gene sequencing of sediment exposure to AOPEs and DPs were applied to assess ecological toxicity, and results showed reduced bacterial richness and diversity with EHDPP and TCP, while TPHP slightly enhanced richness. AOPEs and DPs altered bacterial genera involved in carbon, nitrogen, sulfur cycling and organic compound degradation. Bacterial community assembly suggested elevated stochastic processes and reduced ecotoxicity, confirming AOPEs can be effectively detoxified by 10-min EAOP treatment. Molecular ecological network analysis indicated increased complexity and stability of bacterial communities with DPs. These findings comprehensively revealed the toxicity of AOPEs and their DPs and provided the first evidence of effective degradation and detoxification by EAOP from ecotoxicological perspective.

Revealing the metabolic potential and environmental adaptation of nematophagous fungus, Purpureocillium lilacinum, derived from hadal sediment

The extreme environment shapes fungi in deep-sea sediments with novel metabolic capabilities. The ubiquity of fungi in deep-sea habitats supports their significant roles in these ecosystems. However, there is limited research on the metabolic activities and adaptive mechanisms of filamentous fungi in deep-sea ecosystems. In this study, we investigated the biological activities, including antibacterial, antitumor and nematicidal activity of Purpureocillium lilacinum FDZ8Y1, isolated from sediments of the Mariana Trench. A key feature of P. lilacinum FDZ8Y1 was its tolerance to high hydrostatic pressure (HHP), up to 110 MPa. We showed that HHP affected its vegetative growth, development, and production of secondary metabolites, indicating the potential for discovering novel natural products from hadal fungi. Whole-genome sequencing of P. lilacinum FDZ8Y1 revealed the metabolic potential of this piezotolerant fungus in carbon (carbohydrate metabolism), nitrogen (assimilatory nitrate reduction and protein degradation) and sulfur cycling processes (assimilatory sulfate reduction). Transcriptomic analysis under elevated HHP showed that P. lilacinum FDZ8Y1 may activate several metabolic pathways and stress proteins to cope with HHP, including fatty acid metabolism, the antioxidant defense system, the biosynthetic pathway for secondary metabolites, extracellular enzymes and membrane transporters. This study provides valuable insights into the metabolic potential and adaptation mechanisms of hadal fungi to the challenging conditions of the hadal environment.

A fully coupled solid-particle microphysics scheme for stratospheric aerosol injections within the aerosol–chemistry–climate model SOCOL-AERv2

Abstract. Recent studies have suggested that injection of solid particles such as alumina and calcite particles for stratospheric aerosol injection (SAI) instead of sulfur-based injections could reduce some of the adverse side effects of SAI such as ozone depletion and stratospheric heating. Here, we present a version of the global aerosol–chemistry–climate model SOCOL-AERv2 and the Earth system model (ESM) SOCOLv4 which incorporate a solid-particle microphysics scheme for assessment of SAI of solid particles. Microphysical interactions of the solid particle with the stratospheric sulfur cycle were interactively coupled to the heterogeneous chemistry scheme and the radiative transfer code (RTC) for the first time within an ESM. Therefore, the model allows simulation of heterogeneous chemistry at the particle surface as well as feedbacks between microphysics, chemistry, radiation and climate. We show that sulfur-based SAI results in a doubling of the stratospheric aerosol burden compared to the same mass injection rate of calcite and alumina particles with a radius of 240 nm. Most of the sulfuric acid aerosol mass resulting from SO2 injection does not need to be lifted to the stratosphere but is formed after in situ oxidation and subsequent water uptake in the stratosphere. Therefore, to achieve the same radiative forcing, larger injection rates are needed for calcite and alumina particle injection than for sulfur-based SAI. The stratospheric sulfur cycle would be significantly perturbed, with a reduction in stratospheric sulfuric acid burden by 53 %, when injecting 5 Mt yr−1 (megatons per year) of alumina or calcite particles of 240 nm radius. We show that alumina particles will acquire a sulfuric acid coating equivalent to about 10 nm thickness if the sulfuric acid is equally distributed over the whole available particle surface area in the lower stratosphere. However, due to the steep contact angle of sulfuric acid on alumina particles, the sulfuric acid coating would likely not cover the entire alumina surface, which would result in available surface for heterogeneous reactions other than the ones on sulfuric acid. When applying realistic uptake coefficients of 1.0, 10−5 and 10−4 for H2SO4, HCl and HNO3, respectively, the same scenario with injections of calcite particles results in 94 % of the particle mass remaining in the form of CaCO3. This likely keeps the optical properties of the calcite particles intact but could significantly alter the heterogeneous reactions occurring on the particle surfaces. The major process uncertainties of solid-particle SAI are (1) the solid-particle microphysics in the injection plume and degree of agglomeration of solid particles on the sub-ESM grid scale, (2) the scattering properties of the resulting agglomerates, (3) heterogeneous chemistry on the particle surface, and (4) aerosol–cloud interactions. These uncertainties can only be addressed with extensive, coordinated experimental and modelling research efforts. The model presented in this work offers a useful tool for sensitivity studies and incorporating new experimental results on SAI of solid particles.

Sources and exploration potential of Ordovician subsalt natural gas in Ordos Basin, China

With the continuous increase in exploration efforts in new zones and new strata, significant breakthroughs have been made in the natural gas exploration of the O1m56 to O1m4 formations in the Ordos Basin. Thus, the origin and exploration potential of subsalt natural gas have attracted much attention and urgently need to be addressed. On the basis of certain geochemical characteristics, genetic types, and sources of natural gas, a comprehensive study on the sedimentary environment, organic geochemical characteristics, and spatial distribution scale of source rocks are conducted in this paper by using geological and geochemical methods. The study shows that: (1) The Ordovician subsalt natural gas is mainly “pyrolysis dry gas,” among which the δ13C1 of Ordovician subsalt low sulfur (sulfur-free) natural gas is lighter, with an average value of −39.6‰; the δ13C2 ranges more largely from −35.6‰ to −25.8‰. In contrast, both δ13C1 and δ13C2 values are heavier in high-sulfur natural gas, revealing that different Thermochemical Sulfate Reduction (TSR) reaction stages have different degrees of influence on natural gas components and carbon isotope composition. (2) Subsalt natural gas is classified as “oil-type gas,” which is self-generated and self-accumulated, whose source rocks are mainly Ordovician subsalt marine deposits. (3) Three types of marine source rocks are developed in Ordovician subsalt, including black argillaceous rock, dark argillaceous dolomite (dolomitic mudstone), and dark micrite (bioclastic) limestone. In addition to micrite limestone, these rocks were mainly formed in a confined lagoon sedimentary environment with high salinity and anoxia. Sedimentary water was significantly stratified and the environment was highly reduced. The organic matter content of the source rocks is relatively high, with an average TOC value of 0.45%. The hydrocarbon-generating parent materials are mainly composed of bacteria and algae, and the organic matter evolution reaches high-over maturity stage. The total gas generation amount of the marine source rocks in Ordovician subsalt is approximately 43.8×1012 m3, which can provide hydrocarbons and accumulate for the subsalt favorable reservoir facies located far from Upper Paleozoic gas sources.

Virus-prokaryote interactions assist pollutant removal in constructed wetlands

As a vital part of microbial communities, viruses in constructed wetlands (CWs) remain poorly explored, yet they could significantly affect pollutant removal. Here, two pilot-scale CWs were built to investigate the viral community under different hydraulic loading rates (HLRs) using in-depth metagenomic analysis. Gene-sharing networks suggested that the CWs were pools of unexplored viruses. A higher abundance of prokaryotic functional genes related to sulfur cycling and denitrification was observed in the higher HLR condition, which was associated with greater removal of total nitrogen and nitrate nitrogen compared to the lower HLR condition. Viruses also affect nitrogen pollutant removal by potentially infecting functional prokaryotes, such as denitrification bacteria and ammonia-oxidizing bacteria, and by providing auxiliary metabolic genes involved in sulfur and nitrogen cycling. These findings reveal the significance of viruses in pollutant removal in CWs and enhance the understanding of the relationship between engineering design parameters and performance from microbial perspectives.

Anthropogenic activities affect the diverse autotrophic communities of coastal sediments

Coastal sediments are a critical domain for carbon sequestration and are profoundly impacted by human activities. Therefore, it is essential to understand the structure and components of benthic autotrophs that play a crucial role in carbon sequestration processes, as well as the influence of anthropogenic activities on their communities. This study utilized an urban estuary, an industrial sea bay, a maricultural sea region, and two mangrove coastlines within the coastal areas of Guangdong Province, China. The micro-benthos in these environments, including prokaryotes and eukaryotes, were identified through high-throughput sequencing of 16S rRNA and 18S rRNA genes. The findings show that the autotrophic composition was altered by the interactions of anthropogenic heavy metals (Cd and Zn) and micro-eukaryotes (protazoa, metazoa, and parasitic organisms). Industrial pollution reduced the abundance of both prokaryotic and eukaryotic autotrophs. Mangroves induced a substantial transformation in the sediment eukaryotic and prokaryotic composition, increasing the proportion of autotrophs, notably sulfur-oxidizing and iron-oxidizing bacteria and microalgae. This alteration suggests an increase in specific sulfur and iron cycling with simultaneous carbon sequestration within mangrove sediments. These results indicate that anthropogenic activities affect sediment carbon sequestration by altering autotrophic assemblages along coastlines, thereby inducing consequential shifts in overall elemental cycling processes.

Synchronised removal of nitrogen and sulphate from rubber industrial wastewater by coupling of Sulfammox and sulphide-driven autotrophic denitrification in anaerobic membrane bioreactor.

Global rubber industry, growing 4-6 % annually with 13.76 million Mt of rubber produced in 2019, significantly impacts the economy. This study explores coupling sulfate-dependent ammonium oxidation (Sulfammox) and sulfide-driven autotrophic denitrification (SDAD) within an anaerobic membrane bioreactor (AnMBR) to treat high-strength natural rubber wastewater. Over 225 days, the AnMBR system achieved maximal chemical oxygen demand (COD), total nitrogen (TN), ammonium nitrogen (NH4+-N), and sulfate sulfur (SO42--S) removal efficiencies of 58 %, 31 %, 13 %, and 45 %, respectively. TN is predominantly removed through Sulfammox (accounting for 49 % of NH4+-N removal), SDAD, and conventional denitrification pathways. Sulfate removal is achieved via Sulfammox (responsible for 43 % of SO42--S removal), and Dissimilatory sulfate-reducing (DSR) processes (contributing 57 % of SO42--S removal). Microbial analysis identified Desulfovibrio and Sulfurospirillum as key microbes, while metagenomic analysis highlighted crucial sulfur and nitrogen cycling pathways. The findings support Sulfammox and SDAD as promising eco-friendly strategies for treating ammonia- and sulfate-rich industrial wastewater.

Biogeochemical sulfur transformations in the cohesive and permeable tidal flat sediments of Jade Bay (North Sea)

Intertidal flats are highly productive coastal marine ecosystems which are affected by fast changes in environmental conditions and host dynamic biogeochemical cycles in their sediments. Bioturbation by burrowing organisms and roots of plants strongly affects speciation and cycling of redox-sensitive elements in intertidal sediments. In this work, we have studied the impact of sediment type and vegetation on the cycling of redox-sensitive elements including sulfur, iron, and manganese in sandy and muddy tidal flats sediments in the Jade Bay (North Sea) and adjacent area. The redox speciation of these elements was analyzed in the pore-waters and the total sediment. The isotopic compositions of sulfur species were measured in non-vegetated sediments and in sediments which are inhabited by various plants. In the cohesive sediments, which are not affected by vegetation, a decrease in sulfate concentration, coupled with the presence of relatively high concentrations of hydrogen sulfide in the pore-waters and the presence of sulfide minerals as well the isotopic compositions of sulfur species are consistent with fast rates of sulfate reduction in the sediments. In the cohesive sediments affected by roots of Salicornia stricta and sediments desiccation, a cryptic sulfur cycle, which is characterized by microbial sulfate reduction coupled to fast reoxidation of hydrogen sulfide by Fe(III) (hydr)oxides and, possibly, by oxygen is present. Below the roots penetration depth, speciation of redox-sensitive elements is similar to those in the baren sediments. In the cohesive sediments affected by the roots of Spartina anglica and Triglochin maritima, which have longer roots, a cryptic sulfur cycle was detected in the upper 30 cm of sediments. At the sites that are characterized by permeable surface sediments and alternating permeable and cohesive layers in the deeper sediments, the composition of the sediment has a similar or even more significant impact on the speciation of the redox-sensitive elements than penetration of relatively weak roots of Spartina anglica. These sediments are characterized by the formation of hydrogen sulfide and sulfide oxidation intermediates in the cohesive layers and their diffusion to (and oxidation at) the boundaries between cohesive and permeable sediments. We conclude that in the cohesive sediment, the penetration of roots and desiccation leads to the formation of overall oxidized conditions in the sediments, while in the sediments with alternating layers, permeability may provide a more significant control for speciation of redox-sensitive elements.

Organic Management and Intercropping of Fruit Perennials Increase Soil Microbial Diversity and Activity in Arid Zone Orchard Cropping Systems

Organic farming encourages soil management practices that can improve soil health and fertility by increasing soil organic matter inputs and system sustainability. This study evaluated the effect of three years of continuous organic farming and intercropping orchard treatments on soil microbial diversity, microbial enumeration, respiration, soil fertility and fruit yields. Organic management resulted in higher soil organic matter content, Olsen P, and water holding capacity, but did not affect soil pH, electrical conductivity (EC), K, or Na levels. Growth parameters measured on all fruit trees were not significantly different among treatments. The enumeration of bacteria was significantly higher in organic plots when compared to conventionally managed plots. Soil respiration and substrate-induced respiration were significantly higher in the organic diverse plots in comparison to both conventional systems. The genomic analysis of prokaryotes (16S rRNA) and eukaryotes/fungi (ITS) revealed a significantly higher number of taxa, Shannon H index, and Equitability index in the organic systems for both prokaryotes and eukaryotes, in comparison to conventional farming, all of which are indicators of system sustainability. The relative abundance of Operational Taxonomic Units (OTUs) previously reported as diazotrophs, denitrifiers, or involved in the sulfur cycle, as well as Arbuscular Mychorrizae Fungi (AMF)/glomeromycotan, were highest in the organically managed soils than in the conventional plots. A multivariate correlation network clustering revealed that the microbial communities within the organic and conventional soils had strong dissimilarities regarding soil microbial niches. Our work provides evidence that organic management can be used for increasing soil microbial diversity and soil health, leading to higher levels of sustainability in fruit orchard systems.

The Impact of Beneficial Microorganisms on Soil Vitality: A Review

The paper summarizes the literature on the critical impact of beneficial microorganisms on soil vitality. Common soil microorganisms, including bacteria, fungi, algae, protozoa, and viruses contribute significantly to enhancing soil fertility through processes such as nitrogen fixation, phosphorus solubilization and mobilization, sulfur cycle, composting, and heavy metal remediation. Their abundance and biomass vary significantly across taxa within the uppermost 15 cm of soil, with bacteria dominating numerically and fungi contributing substantially to biomass. These microorganisms mediate essential biogeochemical cycles in soil, including carbon, nitrogen, and phosphorus cycles, by facilitating the decomposition of organic matter and recycling soil nutrients. Nitrogen-fixing bacteria like Rhizobium are prevalent symbionts capable of biologically fixing nitrogen. Additionally, bacteria such as Micrococcus spp., Enterobacter aerogens, Pseudomonas capacia, fungi including Aspergillus niger, A. flavus, A. japonicas, Penicillum spp., and actinomycetes like Streptomyces play crucial roles in phosphorus solubilization, making phosphorus available for plant uptake. This synthesis underscores the critical role of beneficial microorganisms in maintaining soil vitality. These organisms interact with plants through beneficial relationships, influencing soil fertility dynamics by enhancing nutrient availability, promoting plant growth, and controlling pathogens. The use of biofertilizers has emerged as a sustainable strategy to improve crop yields and restore soil fertility, reducing environmental impacts linked to chemical fertilizers. Understanding the intricate dynamics of soil-beneficial microorganism and their interactions with Plants are pivotal for optimizing agricultural practices, ensuring long-term soil health, and enhancing productivity in sustainable farming systems.

Complete genome sequence of strain KD-1T, the type strain of Sulfurisphaera javensis, isolated from an Indonesian hot spring.

Sulfurisphaera javensis KD-1T, originally isolated from an Indonesian acidic hot spring, is a hyperthermophilic, acidophilic, and facultatively anaerobic archaeon. Here, we report the 2.6 Mb complete genome sequence of KD-1T. Genes related to sulfur metabolism were found in the genome, indicating that KD-1T is involved in the sulfur cycle in its habitat.

Metagenomic study of the microbiome and key geochemical potentials associated with architectural heritage sites: a case study of the Song Dynasty city wall in Shou County, China.

Historical cultural heritage sites are valuable for all of mankind, as they reflect the material and spiritual wealth of by nations, countries, or specific groups during the development of human civilization. The types and functions of microorganisms that form biofilms on the surfaces of architectural heritage sites influence measures to preserve and protect these sites. These microorganisms contribute to the biocorrosion of architectural heritage structures through the cycling of chemical elements. The ancient city wall of Shou County is a famous architectural and cultural heritage site from China's Song Dynasty, and the protection and study of this site have substantial historical and cultural significance. In this study, we used metagenomics to study the microbial diversity and taxonomic composition of the Song Dynasty city wall in Shou County, a tangible example of Chinese cultural heritage. The study covered three main topics: (1) examining the distribution of bacteria in the biofilm on the surfaces of the Song Dynasty city wall in Shou County; (2) predicting the influence of bacteria involved in the C, N, and S cycles on the corrosion of the city wall via functional gene analysis; and (3) discussing cultural heritage site protection measures for biocorrosion-related bacteria to investigate the impact of biocorrosion on the Song Dynasty city wall in Shou County, a tangible example of Chinese cultural heritage. The study revealed that (1) the biofilm bacteria mainly belonged to Proteobacteria, Actinobacteria, Cyanobacteria, Bacteroidetes, and Firmicutes, which accounted for more than 70% of the total bacteria in the biofilms. The proportion of fungi in the microbial community of the well-preserved city wall was greater than that in the damaged city wall. The proportion of archaea was low-less than 1%. (2) According to the Shannon diversity index, the well-preserved portion of the ancient city wall had the highest diversity of bacteria, fungi, and archaea, and bacterial diversity on the good city wall was greater than that on the corroded city wall. (3) Bray-Curtis distances revealed that the genomes of the two good city walls were similar and that the genomes of the corroded city wall portions were similar. Researchers also detected human intestine-related bacteria in four locations on the city walls, with the proportion of these bacteria in the microbial community being greater on good city walls than on bad city walls. (4) KEGG functional analysis revealed that the energy metabolism and inorganic ion transport activities of the bacterial community on the corroded city wall were greater than those of the good city wall. (5) In the carbon cycle, the absence of active glycolysis, the ED pathway, and the TCA cycle played significant roles in the collapse of the east city wall. (6) The nitrogen cycling processes involved ammonia oxidation and nitrite reduction to nitrate. (7) In the sulfur cycle, researchers discovered a crucial differential functional gene, SoxY, which facilitates the conversion of thiosulfate to sulfate. This study suggests that, in the future, biological approaches can be used to help cultural heritage site protectors achieve targeted and precise protection of cultural relics through the use of microbial growth inhibition technology. The results of this study serve as a guide for the protection of cultural heritage sites in other parts of China and provide a useful supplement to research on the protection of world cultural heritage or architectural heritage sites.

Metal–organic framework-based SERS chips enable in situ and sensitive detection of dissolved hydrogen sulfide in natural water: Towards a bring-back-chip mode for field analysis

Hydrogen sulfide (H2S) in natural water plays an important role in carbon and sulfur cycles in biosphere. Current detection protocol is complicated, which need to “bring back water” to lab followed by gas chromatograph analysis. In situ, field detection is still challenging. Herein, a portable, sensitive surface enhanced Raman scattering (SERS) chip was proposed for in situ H2S sampling and SERS signal stabilizing, enabling a “bring back chip” manner for lab analysis. The SERS chip was composed of single core-shell gold nanorod-ZIF-8 framework (Au NR@ZIF-8) nanoparticle. Relying on headspace adsorption, evaporated H2S was enriched in the ZIF-8 shell and then reacted with Au NR, resulting in the weakening of the Au-Br bond Raman peak (175 cm−1) and the appearance of the Au-S bond Raman peak (273 cm−1). The SERS signal reached equilibrium in 10 min. The detection range of H2S was 0.1–2000 μg/L and limit of detection was 0.098 μg/L. SERS signal was not interfered by normal volatile gases. Moreover, SERS signal of a reacted chip was stable at an ambient condition, allowing for in situ sampling and bring-back detection. The applicability of the chip was verified by dynamic H2S monitoring during artificial black-odor water evolution, and in-field quantitative analysis of H2S content in river water and sediment. Finally, the chip was sealed in a waterproof breathable membrane device, which realized the detection of vertical profiles of H2S in the river. This work provided a promising tool for field analysis of H2S in natural environments.

Long-Term Autotrophic Growth and Solar-to-Chemical Conversion in Shewanella Oneidensis MR-1 through Light-Driven Electron Transfer.

Members of the genus Shewanella are known for their versatile electron accepting routes, which allow them to couple decomposition of organic matter to reduction of various terminal electron acceptors for heterotrophic growth in diverse environments. Here, we report autotrophic growth of Shewanella oneidensis MR-1 with photoelectrons provided by illuminated biogenic CdS nanoparticles. This hybrid system enables photosynthetic oscillatory acetate production from CO2 for over five months, far exceeding other inorganic-biological hybrid system that can only sustain for hours or days. Biochemical, electrochemical and transcriptomic analyses reveal that the efficient electron uptake of S. oneidensis MR-1 from illuminated CdS nanoparticles supplies sufficient energy to stimulate the previously overlooked reductive glycine pathway for CO2 fixation. The continuous solar-to-chemical conversion is achieved by photon induced electric recycling in sulfur species. Overall, our findings demonstrate that this mineral-assisted photosynthesis, as a widely existing and unique model of light energy conversion, could support the sustained photoautotrophic growth of non-photosynthetic microorganisms in nutrient-lean environments and mediate the reversal of coupled carbon and sulfur cycling, consequently resulting in previously unknown environmental effects. In addition, the hybrid system provides a sustainable and flexible platform to develop a variety of solar products for carbon neutrality.

Long‐Term Autotrophic Growth and Solar‐to‐Chemical Conversion in Shewanella Oneidensis MR‐1 through Light‐Driven Electron Transfer

AbstractMembers of the genus Shewanella are known for their versatile electron accepting routes, which allow them to couple decomposition of organic matter to reduction of various terminal electron acceptors for heterotrophic growth in diverse environments. Here, we report autotrophic growth of Shewanella oneidensis MR‐1 with photoelectrons provided by illuminated biogenic CdS nanoparticles. This hybrid system enables photosynthetic oscillatory acetate production from CO2 for over five months, far exceeding other inorganic‐biological hybrid system that can only sustain for hours or days. Biochemical, electrochemical and transcriptomic analyses reveal that the efficient electron uptake of S. oneidensis MR‐1 from illuminated CdS nanoparticles supplies sufficient energy to stimulate the previously overlooked reductive glycine pathway for CO2 fixation. The continuous solar‐to‐chemical conversion is achieved by photon induced electric recycling in sulfur species. Overall, our findings demonstrate that this mineral‐assisted photosynthesis, as a widely existing and unique model of light energy conversion, could support the sustained photoautotrophic growth of non‐photosynthetic microorganisms in nutrient‐lean environments and mediate the reversal of coupled carbon and sulfur cycling, consequently resulting in previously unknown environmental effects. In addition, the hybrid system provides a sustainable and flexible platform to develop a variety of solar products for carbon neutrality.

Integrating Livestock with Crops and Forestry for Sustainability

Global per capita consumption of animal protein is set to rise, particularly in developing economies, leading to a dramatic increase in meat consumption from 133 million tons in 1980 to 452 million tons by 2050. Notably, 86% of this increase, or 279 million tons, is expected to occur in developing countries. The expansion of animal-based agricultural systems, which cover 45% of the Earth's land area, presents significant challenges. These systems contribute substantially to agricultural emissions, including greenhouse gases such as nitrous oxide (N2O) and methane (CH4), and account for 8% of global water usage. The livestock sector is largely comprised of resource-constrained smallholders in developing nations. Environmental impacts arise from the lack of integration with other agricultural and forestry practices, disrupting the natural cycles of carbon, water, nitrogen, phosphorus, and sulfur. This disruption leads to increased emissions of N2O and CH4, water contamination, land degradation, and biodiversity loss. To address these challenges and support the United Nations' Sustainable Development Goals (SDGs) related to poverty reduction (SDG #1), hunger alleviation (SDG #2), clean water and sanitation (SDG #6), and climate action (SDG #13), it is essential to integrate livestock with crop and tree farming. Strategies to improve sustainability include incorporating pastures into crop rotations, using controlled grazing techniques, practicing agro-forestry such as alley cropping, and implementing systems like ley farming. Additional measures include precision feeding and protein matching to reduce enteric fermentation, repurposing emissions of CH4 and N2O, and effective manure management. Addressing greenhouse gas emissions through diverse approaches, reducing product wastage, minimizing antibiotic use, and restoring rangelands to enhance soil carbon storage are also critical for achieving sustainable livestock practices.

Seasonal variations of microbial communities and viral diversity in fishery-enhanced marine ranching sediments: insights into metabolic potentials and ecological interactions

BackgroundThe ecosystems of marine ranching have enhanced marine biodiversity and ecological balance and have promoted the natural recovery and enhancement of fishery resources. The microbial communities of these ecosystems, including bacteria, fungi, protists, and viruses, are the drivers of biogeochemical cycles. Although seasonal changes in microbial communities are critical for ecosystem functioning, the current understanding of microbial-driven metabolic properties and their viral communities in marine sediments remains limited. Here, we employed amplicon (16S and 18S) and metagenomic approaches aiming to reveal the seasonal patterns of microbial communities, bacterial-eukaryotic interactions, whole metabolic potential, and their coupling mechanisms with carbon (C), nitrogen (N), and sulfur (S) cycling in marine ranching sediments. Additionally, the characterization and diversity of viral communities in different seasons were explored in marine ranching sediments.ResultsThe current study demonstrated that seasonal variations dramatically affected the diversity of microbial communities in marine ranching sediments and the bacterial-eukaryotic interkingdom co-occurrence networks. Metabolic reconstruction of the 113 medium to high-quality metagenome-assembled genomes (MAGs) was conducted, and a total of 8 MAGs involved in key metabolic genes and pathways (methane oxidation - denitrification - S oxidation), suggesting a possible coupling effect between the C, N, and S cycles. In total, 338 viral operational taxonomic units (vOTUs) were identified, all possessing specific ecological characteristics in different seasons and primarily belonging to Caudoviricetes, revealing their widespread distribution and variety in marine sediment ecosystems. In addition, predicted virus-host linkages showed that high host specificity was observed, with few viruses associated with specific hosts.ConclusionsThis finding deepens our knowledge of element cycling and viral diversity in fisheries enrichment ecosystems, providing insights into microbial-virus interactions in marine sediments and their effects on biogeochemical cycling. These findings have potential applications in marine ranching management and ecological conservation.DRyDF7ykR-XALqAtu34uZtVideo