Abstract The palyno-organic facies aspects of the subsurface Lower Cretaceous core samples are extensively investigated in three wells in the northern part of the Western Desert of Egypt. These wells are Burg El Arab-1 and Mamura-1, Mersa Matruh-1 (BAX-1, MAX-1 and MMX-1 respectively). The study is based on the palynofacies and organic geochemical analyses. The palynofacies examination includes a statistical analysis of the different classes of organic particles by cluster analysis and principal component analysis (PCA). This analysis leads to identify 4 palynofacies types (A, B, C1 and C2) which are dominated by various levels of terrestrial floral materials. The paleoenvironmental settings that are attributed to these palynofacies types are the distal suboxic-oxic, proximal oxic, transitional oxic and highly distal oxic. The principal component analysis (PCA) differentiates between these palynofacies types mathematically by the biplot of components 1 and 2. The component 1 corresponds to distance from the terrestrial floral sources. The identification of quantity, type, quality and thermal maturity of organic matter is discussed depending on the palynofacies and organic geochemical analyses. The thermal maturity is assessed digitally by measuring the RGB color channels in the spore images and their corresponding thermal alteration index (TAI incorporated with values of Tmax). These measures are integrated in burial history models with geothermal gradient and depositional history. The study reveals that most of the core samples represent generally fair to good enriched sources of gas prone type III kerogen and less mixed gas-oil type II/III kerogen. Additionally, some occasional high levels of organic conversions are recorded. The burial history models indicate that oil expulsion window initiated in the Cretaceous. The examinations indicate mature oil sources in the Alam El Bueib Formation in MMX-1 well. The organic geochemical parameters are correlated versus the component 1 and sum of all components of PCA. The correlation coefficients (R2) pointed to good correlation between the oxygen index (OI), TOC and S2 and lower correlation with hydrogen index (HI).